NO07G02020, NO07G02020 (gene) Nannochloropsis oceanica

Overview
NameNO07G02020
Unique NameNO07G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr7:589586..590764 -

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Properties
Property NameValue
Description50s ribosomal protein l9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:589586..590764 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009027Ribosomal_L9/RNase_H1_N
IPR000244Ribosomal_L9
IPR020070Ribosomal_L9_N
Homology
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_089159054.1 (50S ribosomal protein L9 [Caballeronia sordidicola] >OXC80299.1 LSU ribosomal protein L9p [Caballeronia sordidicola])

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         + +   +  ++K  +DG  L   +T A++A A++KQ    VE++ +RL  G  + ++GD  I+V
Sbjct:    1 MQIILLEKVVNLGNLGDIVRVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAATALGEKLSGATVQISQKAGVDG-RLFGSVTNADIAEALKKQGLAEVEKSQVRLADG-PLKLVGDHAIQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_035933506.1 (50S ribosomal protein L9 [Caballeronia glathei] >KDR39657.1 50S ribosomal protein L9 [Caballeronia glathei] >CDY76575.1 LSU ribosomal protein L9p [Caballeronia glathei])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKVEV 167
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R++ E+   E+         +     +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP G  + ++GD  ++V +
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRAELEKVAAEKLAAATAQGEKLNGSTVQISQKAGVDG-RLFGSVTNADIAEALKKQGFAEVEKAQVRLPEG-PLKMVGDHSVQVSL 134
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_047896823.1 (50S ribosomal protein L9 [Caballeronia mineralivorans] >KLU21616.1 50S ribosomal protein L9 [Caballeronia mineralivorans PML1(12)])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         + +   +  ++K  +DG  L   +T A++A A++KQ    VE++ +RL  G  + ++GD  +++
Sbjct:    1 MQIILLEKVVNLGNLGDIVRVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAATALGEKLSGATVQISQKAGVDG-RLFGSVTNADIADALKKQGLAEVEKSQVRLADG-PLKLVGDHAVQI 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_087044206.1 (50S ribosomal protein L9 [Caballeronia ptereochthonis] >SAK55846.1 50S ribosomal protein L9 [Caballeronia ptereochthonis])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R++ E+   E+         + +   +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRAELEKVAAEKLAAAQAQGEKLSGFTVQISQKAGVDG-RLFGSVTNADIAEALKKQGFAEVEKAQVRLPQG-PLKIVGDHPVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_062090234.1 (MULTISPECIES: 50S ribosomal protein L9 [Burkholderiaceae] >SAL55310.1 50S ribosomal protein L9 [Caballeronia udeis] >SOE61341.1 LSU ribosomal protein L9P [Burkholderia sp. D7])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 47/134 (35.07%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         + +   +  ++K  +DG  L   +T A++A A++KQ    VE++ +RL  G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVRVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAATALGEKLSGATVQISQKAGVDG-RLFGSVTNADIAEALKKQGLAEVEKSQVRLADG-PLKLVGDHAVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_062604378.1 (50S ribosomal protein L9 [Caballeronia calidae] >SAK61834.1 50S ribosomal protein L9 [Caballeronia calidae])

HSP 1 Score: 67.8 bits (164), Expect = 5.200e-8
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         +     +   +K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAAQAQGEKLNGFTVQIGQKAGVDG-RLFGSVTNADIADALKKQGFAEVEKAQVRLPQG-PIKMVGDHPVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_008349840.1 (MULTISPECIES: 50S ribosomal protein L9 [Burkholderiaceae] >EKS67873.1 50S ribosomal protein L9 [Burkholderia sp. SJ98] >KDR26358.1 50S ribosomal protein L9 [Caballeronia zhejiangensis])

HSP 1 Score: 67.8 bits (164), Expect = 5.200e-8
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         +     +   +K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAAQAQGEKLNGFTVQIGQKAGVDG-RLFGSVTNADIADALKKQGFAEVEKAQVRLPQG-PIKMVGDHPVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_014191234.1 (MULTISPECIES: 50S ribosomal protein L9 [Burkholderiaceae] >AET89007.1 ribosomal protein L9 [Burkholderia sp. YI23] >BAO86265.1 50S ribosomal protein L9 [Burkholderia sp. RPE67] >SAL23002.1 50S ribosomal protein L9 [Caballeronia cordobensis] >AQG98518.1 50S ribosomal protein L9 [Burkholderia sp. KK1])

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-8
Identity = 47/134 (35.07%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R++ E+   E+         + +   +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRAELEKVAAEKLSAAQAQGEKLSGFTVQISQKAGVDG-RLFGSVTNADIADALKKQGFAEVEKAQVRLPEG-PLKMVGDHPVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_016345217.1 (50S ribosomal protein L9 [Burkholderia sp. RPE64] >BAN23063.1 50S ribosomal protein L9 [Burkholderia sp. RPE64])

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-8
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R++ E+   E+     +   +     +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRAELEKVAAEKLAAAQKQGEKLNGFTVQISQKAGVDG-RLFGSVTNADIADALKKQGFADVEKAQVRLPQG-PLKIVGDHAVQV 132
[Close]
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_086966881.1 (50S ribosomal protein L9 [Caballeronia glebae] >SAK54240.1 50S ribosomal protein L9 [Caballeronia glebae])

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-8
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 0 
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ + VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         +     +   +K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIIKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAAQAQGEKLNGFTVQIGQKAGVDG-RLFGSVTNADIADALKKQGFAEVEKAQVRLPQG-PIKLVGDHPVQV 132
The following BLAST results are available for this feature:
BLAST of NO07G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_089159054.13.000e-835.8250S ribosomal protein L9 [Caballeronia sordidicola... [more]
WP_035933506.14.000e-834.5650S ribosomal protein L9 [Caballeronia glathei] >K... [more]
WP_047896823.14.000e-834.3350S ribosomal protein L9 [Caballeronia mineralivor... [more]
WP_087044206.14.000e-835.0750S ribosomal protein L9 [Caballeronia ptereochtho... [more]
WP_062090234.14.000e-835.07MULTISPECIES: 50S ribosomal protein L9 [Burkholder... [more]
WP_062604378.15.200e-835.8250S ribosomal protein L9 [Caballeronia calidae] >S... [more]
WP_008349840.15.200e-835.82MULTISPECIES: 50S ribosomal protein L9 [Burkholder... [more]
WP_014191234.16.800e-835.07MULTISPECIES: 50S ribosomal protein L9 [Burkholder... [more]
WP_016345217.16.800e-835.0750S ribosomal protein L9 [Burkholderia sp. RPE64] ... [more]
WP_086966881.16.800e-835.0750S ribosomal protein L9 [Caballeronia glebae] >SA... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000636NSK000636Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02020.1NO07G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|331155gene_2524Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g96gene3406Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02020.1NO07G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02020 ID=NO07G02020|Name=NO07G02020|organism=Nannochloropsis oceanica|type=gene|length=1179bp
ATGTCGCTGCTAGCGACGGTCTGCCGGCTGAGCAGgtaagagaacgaagc
acgatgattctctggctttccatcatcctacctgtctcctgcctcctgct
ttcctctgccaccgtggtgtttgactcggttactgaaccacggactgtcc
cctgggaaggtttcgcgagacacatgtcgtggggtttcgaaaacctttgt
aggcgtgggcgttttcaaagataggggattggtaagactcttttcttgcc
tccgactcccttcttgctgttgctgttgggctctgtgtggtgtggctgcc
acttgttgtttgttgtctttttgcctcgctggccccgagcccaatttggt
gtcctccttcctgctcttggactctgcattataccgtacggccagtgtct
cgtagcatctgctcgtatgtcagataaacagtctctttcttctcctctcc
gtctttatcaagcgttcctctctcatcctccgccttcgcccctccccatt
gtacagACCCATCACCCCCGGCCCAACGACTTCCACCCGCGCCATGTCCA
AGAAGCGGGCCGTAAACGTGGTCCTGCTTGAAGACCTGGCCCTGCAGGGC
TTTGCAGGGGAAACAGTGGCAGTCAAGCCGGGGTATGCCCGCAACTTCCT
CATCCCAGGCCGCAAGGCTGTGTACGCCACTGCCGACAACAAAGCACTGC
ACGTCGTGGAACGCTCGGACGAGGAGCGGAGGCTCTTAGAAGAACGCCGA
GATTTCGTGCAGTTCAAAGCGCGGGCTGCGGATCGGGCATTAACATTTAC
CCGAAAGATTTCATTGGATGGAACGAGTTTGGAGCAGCCTCTTACCAAGG
CCGAGCTAGCCGGGGCTGTGCGAAAACAGTTGAAGCGCCGAGTGGAGGAG
ACTGACATTCGATTGCCCCGAGGCACGGAAGTGAATGTCTTGGGAGATCT
GGAGATCAAGGTAGAAGTGGGAGTACCACAGCTGTTGTTATTGCAAGAGC
ATCTACAGCAGCAGCAAGACGGGGGGTGTCCTACAGCGATGGGGGAGAAG
AAGGGGGGAGTCAAGGAGAAGAGAGAGGCTGTGTCTGTCAAGGTAAATAT
CCTCAAGGATGAGACGAAGCGGGATCAAAGAGTCTCTCGTGGGCCAGATG
CAGAGGGAGGCGGAAAGCCGAATGAATAA
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protein sequence of NO07G02020.1

>NO07G02020.1-protein ID=NO07G02020.1-protein|Name=NO07G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MSLLATVCRLSRPITPGPTTSTRAMSKKRAVNVVLLEDLALQGFAGETVA
VKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKA
RAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPR
GTEVNVLGDLEIKVEVGVPQLLLLQEHLQQQQDGGCPTAMGEKKGGVKEK
REAVSVKVNILKDETKRDQRVSRGPDAEGGGKPNE*
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Synonyms
Publications