NO07G02020, NO07G02020 (gene) Nannochloropsis oceanica

Overview
NameNO07G02020
Unique NameNO07G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr7:589586..590764 -

Link to JBrowse

Properties
Property NameValue
Description50s ribosomal protein l9
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:589586..590764 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009027Ribosomal_L9/RNase_H1_N
IPR000244Ribosomal_L9
IPR020070Ribosomal_L9_N
Homology
BLAST of NO07G02020 vs. NCBI_GenBank
Match: XP_005856401.1 (50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526] >EKU19958.1 50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.2 bits (570), Expect = 4.300e-55
Identity = 122/198 (61.62%), Postives = 148/198 (74.75%), Query Frame = 0
Query:   23 RAMSKKRAVNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKVEVGVPQLLLLQEHLQQQQDGGCPTAMGEKKGGVKEKREAVSVKVNILKDETKRDQR 221
            R +SKKR VNVVLLEDLA +GFAGE VAVKPGYARNFLIPGRKAVYAT DNK  H+V RS+EER LLEERRDF+ FK+R   RA+TFTR +++DG  LE PLTKA+LA A+RKQLKR V+E DI LP+G+E+ +LG+L +KV V VP L++ +     Q DGG             +KRE ++VKV I KDE KRD+R
Sbjct:   95 RNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGG-------------KKREMLTVKVAIQKDEKKRDRR 279          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: EWM27172.1 (50s ribosomal protein l9 [Nannochloropsis gaditana])

HSP 1 Score: 224.2 bits (570), Expect = 4.300e-55
Identity = 122/198 (61.62%), Postives = 148/198 (74.75%), Query Frame = 0
Query:   23 RAMSKKRAVNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKVEVGVPQLLLLQEHLQQQQDGGCPTAMGEKKGGVKEKREAVSVKVNILKDETKRDQR 221
            R +SKKR VNVVLLEDLA +GFAGE VAVKPGYARNFLIPGRKAVYAT DNK  H+V RS+EER LLEERRDF+ FK+R   RA+TFTR +++DG  LE PLTKA+LA A+RKQLKR V+E DI LP+G+E+ +LG+L +KV V VP L++ +     Q DGG             +KRE ++VKV I KDE KRD+R
Sbjct:   20 RNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGG-------------KKREMLTVKVAIQKDEKKRDRR 204          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: KMZ11983.1 (LSU ribosomal protein L9p [Candidatus Burkholderia humilis])

HSP 1 Score: 70.9 bits (172), Expect = 6.100e-9
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D ER   E+         +     +   +K+ +DG  L   +T A++A A++KQ    VE++ +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLERVAAEKLAATQAQGEKLNGFTVQIGQKVGVDG-RLFGSVTNADIADALKKQGFAEVEKSQVRLPQG-PIKLVGDHPVQV 132          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: XP_009823846.1 (ribosomal protein L9 [Aphanomyces astaci] >ETV87047.1 ribosomal protein L9 [Aphanomyces astaci])

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-9
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSD--EERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKVEV 167
            V+VVL ED+   GF G+ VAVK GYARNFL P +KAVYAT  N A + VE++   EE    E+ R   Q   R +   L F R  +    + + P+T   +   +  QL  +V    + LP    + ++G+  +K+ V
Sbjct:   21 VDVVLKEDVPKLGFRGDVVAVKAGYARNFLYPEKKAVYATKLNLAAYKVEKTSTLEEGIDAEQERIREQIVKRLSTVTLKFKRHCTTPKPNTKSPVTAQNIVDKLESQLGIKVGIARVILP--DPIKLVGNHNVKIRV 156          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_087668275.1 (50S ribosomal protein L9 [Caballeronia humi] >SAL44326.1 50S ribosomal protein L9 [Caballeronia humi])

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-9
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         +     +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP G  + ++GD  I+V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLATATAAGEKLNGATVQISQKAGVDG-RLFGSVTNADIAEALKKQGLAEVEKAQVRLPEG-PLKLVGDHAIQV 132          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: PID72814.1 (50S ribosomal protein L9 [Desulfobulbus propionicus] >PIE60372.1 50S ribosomal protein L9 [Desulfobulbus propionicus])

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-9
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQ-LKRRVEETDIRLPRGTEVNVLGDLEIKVEVG 168
            + ++L E +   G  GE V VKPGYARN+LIP +KAV  T +  A    +R D E RL E+++D  +  A+ AD+    T+++  D   L   +T A++A A+  Q +K   +   ++ P    +  +G+ ++ V+VG
Sbjct:    1 MEIILRETIDTLGLEGEVVKVKPGYARNYLIPQKKAVLVTPEALAELEQKRQDIEARLAEQKKDADKLAAQLADKTFIITKRVG-DDNRLFGSVTNADIAVAIEDQGIKFDKKNIVLKNP----IKEIGEYKVTVKVG 133          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_027289246.1 (50S ribosomal protein L9 [Rhodovibrio salinarum])

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-8
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLG----DLEIKVEVGV 169
            + V+LLE +   GF G+ VAVKPGYARNFL+P +KA+ AT  N+A    +R++ E R  E R+D      R  D  ++  R+    G  L   +T  ++A A+  Q   R+E   I+L  G ++  +G    D+ +  EV V
Sbjct:    1 MQVILLERVENLGFMGDEVAVKPGYARNFLLPQKKALRATDSNRAYFQSKRAELEARNAERRKDAETAAKRIDDMVVSMIRQAGETG-QLYGSVTARDIADALADQ-GARIERGQIQL--GRQIKTIGLHPVDVRLHPEVSV 138          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_087657492.1 (50S ribosomal protein L9 [Caballeronia terrestris] >SAL65146.1 50S ribosomal protein L9 [Caballeronia terrestris])

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-8
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         +     +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP G  + ++GD  I+V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVASEKLAAATAAGEKLNGATVQISQKAGVDG-RLFGSVTNADIADALKKQGLAEVEKAQVRLPEG-PLKLVGDHAIQV 132          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_061137521.1 (50S ribosomal protein L9 [Caballeronia fortuita] >SAK94898.1 50S ribosomal protein L9 [Caballeronia fortuita])

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R++ E+   E+ +       +     +  ++K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRAELEKVAAEKLKAAEAQGEKLNGFTVQISQKAGVDG-RLFGSVTNADIADALKKQGFAEVEKAQVRLPQG-PIKMVGDHPVQV 132          
BLAST of NO07G02020 vs. NCBI_GenBank
Match: WP_061168649.1 (50S ribosomal protein L9 [Caballeronia hypogeia] >SAK67880.1 50S ribosomal protein L9 [Caballeronia hypogeia])

HSP 1 Score: 68.6 bits (166), Expect = 3.000e-8
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0
Query:   31 VNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKV 165
            + ++LLE +   G  G+ V VK GYARNFLIPG+KA  AT D  A   V R+D E+   E+         + +   +   +K  +DG  L   +T A++A A++KQ    VE+  +RLP+G  + ++GD  ++V
Sbjct:    1 MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPGKKARRATKDAIAEFEVRRADLEKVAAEKLAAAQAQGEKLSGFTVQIGQKAGVDG-RLFGSVTNADIAEALKKQGFAEVEKAQVRLPQG-PIKMVGDHPVQV 132          
The following BLAST results are available for this feature:
BLAST of NO07G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856401.14.300e-5561.6250s ribosomal protein l9, partial [Nannochloropsis... [more]
EWM27172.14.300e-5561.6250s ribosomal protein l9 [Nannochloropsis gaditana... [more]
KMZ11983.16.100e-936.57LSU ribosomal protein L9p [Candidatus Burkholderia... [more]
XP_009823846.18.000e-936.23ribosomal protein L9 [Aphanomyces astaci] >ETV8704... [more]
WP_087668275.18.000e-936.5750S ribosomal protein L9 [Caballeronia humi] >SAL4... [more]
PID72814.18.000e-933.3350S ribosomal protein L9 [Desulfobulbus propionicu... [more]
WP_027289246.11.000e-835.9250S ribosomal protein L9 [Rhodovibrio salinarum][more]
WP_087657492.11.000e-836.5750S ribosomal protein L9 [Caballeronia terrestris]... [more]
WP_061137521.13.000e-835.0750S ribosomal protein L9 [Caballeronia fortuita] >... [more]
WP_061168649.13.000e-835.8250S ribosomal protein L9 [Caballeronia hypogeia] >... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000636NSK000636Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02020.1NO07G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|331155gene_2524Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g96gene3406Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02020.1NO07G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02020 ID=NO07G02020|Name=NO07G02020|organism=Nannochloropsis oceanica|type=gene|length=1179bp
ATGTCGCTGCTAGCGACGGTCTGCCGGCTGAGCAGgtaagagaacgaagc
acgatgattctctggctttccatcatcctacctgtctcctgcctcctgct
ttcctctgccaccgtggtgtttgactcggttactgaaccacggactgtcc
cctgggaaggtttcgcgagacacatgtcgtggggtttcgaaaacctttgt
aggcgtgggcgttttcaaagataggggattggtaagactcttttcttgcc
tccgactcccttcttgctgttgctgttgggctctgtgtggtgtggctgcc
acttgttgtttgttgtctttttgcctcgctggccccgagcccaatttggt
gtcctccttcctgctcttggactctgcattataccgtacggccagtgtct
cgtagcatctgctcgtatgtcagataaacagtctctttcttctcctctcc
gtctttatcaagcgttcctctctcatcctccgccttcgcccctccccatt
gtacagACCCATCACCCCCGGCCCAACGACTTCCACCCGCGCCATGTCCA
AGAAGCGGGCCGTAAACGTGGTCCTGCTTGAAGACCTGGCCCTGCAGGGC
TTTGCAGGGGAAACAGTGGCAGTCAAGCCGGGGTATGCCCGCAACTTCCT
CATCCCAGGCCGCAAGGCTGTGTACGCCACTGCCGACAACAAAGCACTGC
ACGTCGTGGAACGCTCGGACGAGGAGCGGAGGCTCTTAGAAGAACGCCGA
GATTTCGTGCAGTTCAAAGCGCGGGCTGCGGATCGGGCATTAACATTTAC
CCGAAAGATTTCATTGGATGGAACGAGTTTGGAGCAGCCTCTTACCAAGG
CCGAGCTAGCCGGGGCTGTGCGAAAACAGTTGAAGCGCCGAGTGGAGGAG
ACTGACATTCGATTGCCCCGAGGCACGGAAGTGAATGTCTTGGGAGATCT
GGAGATCAAGGTAGAAGTGGGAGTACCACAGCTGTTGTTATTGCAAGAGC
ATCTACAGCAGCAGCAAGACGGGGGGTGTCCTACAGCGATGGGGGAGAAG
AAGGGGGGAGTCAAGGAGAAGAGAGAGGCTGTGTCTGTCAAGGTAAATAT
CCTCAAGGATGAGACGAAGCGGGATCAAAGAGTCTCTCGTGGGCCAGATG
CAGAGGGAGGCGGAAAGCCGAATGAATAA
back to top

protein sequence of NO07G02020.1

>NO07G02020.1-protein ID=NO07G02020.1-protein|Name=NO07G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MSLLATVCRLSRPITPGPTTSTRAMSKKRAVNVVLLEDLALQGFAGETVA
VKPGYARNFLIPGRKAVYATADNKALHVVERSDEERRLLEERRDFVQFKA
RAADRALTFTRKISLDGTSLEQPLTKAELAGAVRKQLKRRVEETDIRLPR
GTEVNVLGDLEIKVEVGVPQLLLLQEHLQQQQDGGCPTAMGEKKGGVKEK
REAVSVKVNILKDETKRDQRVSRGPDAEGGGKPNE*
back to top
Synonyms
Publications