NO07G01970, NO07G01970 (gene) Nannochloropsis oceanica

Overview
NameNO07G01970
Unique NameNO07G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2880
Alignment locationchr7:572026..574905 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:572026..574905 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01970 vs. NCBI_GenBank
Match: EWM27137.1 (hypothetical protein Naga_100010g34 [Nannochloropsis gaditana])

HSP 1 Score: 722.2 bits (1863), Expect = 2.100e-204
Identity = 445/987 (45.09%), Postives = 578/987 (58.56%), Query Frame = 0 
Query:    6 LWQLVRHLSVSPSFVSNDTLSLPSSLDASTPSTALFDWLRENVWRLWPVSLYAKELMHLQSILKLLLARTGPR---WEWEPQEMQVLLSVLRQAINAAASPGTPPVASNSYELISDCLEICVRWASARLVDASELRNEVVHAAAKLASEAACQTFGSC-----NLDG----EEKNTAGQAASLMQQALHLWVLVGRLRSCPIRDVVDQVARLMAWPGAAACLLDYGGPTVWRDVLKALLLDLTDANAELLSATDVEYRLVRVCMGVVAGSSHIWAWDAWAEILMQLPEDEEEVVDNVLWPADSVGWRRESATYAVLEAMDAPTSWQDRATASVGAVALLSGRFDDDRLWKKLLGLLKDVIRHSVHSPSAHCSKEGEGEEWEGLRMARVGLCRALVMLGNSRFCARSFEGESRAWTREWGVCLTTLLTLSFDDVVVAADMVSNVHSRDGNMNSIGSSSFNXXXXXXXXXXXXXXXXXXXXXQPQHNKQVDILAANICERCLSPVGNRQHEMAKAITALFKASDAIGQIEAFSILRSNARTVITADITGGKSGTYPWGLVLLLQICLVLSDPASAAIASTGQVIWVLEVLDTVAAL--VGPAS--PPSI------------LQDTLLQASGNLQAVLEDDVEEGWLKEARDWIMKALGRQKERAKQRAKEMASLGIGSCSDKS-------NSTDSSSETPALGSKRGEQIQNEQQQHQ--EENRLAFLINLAFAMCIQTRRPAPHHYVAELTRFLLQEVLCPYFPKRGVAQAQVHRCLRSLISHPNLLAYRAGRIRHWDEARRRVMATYVRVSLEAYPTSTAFQDLAYCVGAVIGATPTEGDPGGQALLLHCLHLIQDRALALLRREIPGEKGMREGGMDPGPAQLRRPETRKLVKLLFQTLLVCPFSVLEVALQSLGKNFLLQGFEGRPESYVAVLRVLKDVVFGDVETMRQSVLAKWYLTHLREKENLHQEE---RSTGVKHRATSG 953
            L +LVRHLS      SN   S  +S D+++ S A F  LRE   +  P     + +  L+SIL   L           W PQEMQ+LLSVLRQ ++ + S  T  V+  + E+ S+C EI +RWA+  +   S L  +VVH AA L SEAA Q   +      +L G    + K    QAA L+ +ALHLWV  GRL +CP+ +VVD+V+RL   PG+   LL+  GP+VW ++ KAL+L+L +A A +L+A DVEYRLVRVC+  VA S H+W W  WA++L +LPED EE+VD VLWPADS GWRRESAT AVLEA D    W +   A VGAVALLSGRF+D RLWKK LGLL DV+           +     E W   R A VG   +L+ LGNS FC+RS + ES  W +EWG+CL  LL+L  ++   A D+       DG+ +                                   +V  LA  +C   L P  N   E+ KAITALFKASDA  Q EAFS +R+  R ++ +      S    W L+L+L+IC +L DP SAAI S+ Q ++VLE+L T AAL   GPAS  P S+            L  TL QAS +LQ VLE+DVE+ WL+EARDWIM AL ++K  +++   ++A L + +    S        S  SS E    G  R ++ Q  QQQ +  EE R AFL +LAF M I+TRRPA H  VAELTRFLLQ V+ P FP   +AQ QVH CLR LIS+P  LAYRAGR+ HWDEARRRV+  YV  +LEAYP +  F+DL YCVGA IGATPTE DP GQAL+L+  +L+Q RALAL +     E+G            +    TR L+ LLFQ+LL+CP +V E  L+ + ++F+L+G  G PE  VAVL +LK +VFG+VE +RQ+++AKWYL  LR++E+L   E   RS   K     G
Sbjct:    7 LSRLVRHLS------SNCRSSTRTS-DSTSLSIAFFTSLRE---QFPPTYSQTEHIYRLRSILVPFLNHVESETHLQSWPPQEMQILLSVLRQTLDTSTSHDTVSVSQATLEIFSNCSEILLRWAAVSIGQNSFLTRDVVHCAADLVSEAAFQALETWLARRGDLKGQISIQAKGNDVQAAGLLVRALHLWVFAGRLAACPLAEVVDRVSRLFECPGSTTSLLENFGPSVWENISKALILELAEAEAVVLTAMDVEYRLVRVCLRAVAKSPHLWVWAIWAKVLAELPEDNEELVDGVLWPADSAGWRRESATQAVLEASDV---WLEEVAAGVGAVALLSGRFEDHRLWKKFLGLLNDVVGQKRRLDRDLKNMANPEEAW---RTASVGTSLSLIHLGNSPFCSRSSDSESNVWAKEWGLCLKALLSLCLEETTAAGDLADFCGVNDGHEDY------------------------------SQRPKVTALATILCPESLGPTEN---EICKAITALFKASDAQSQTEAFSFMRARTRELVLS------SSGVSWELLLVLRICALLCDPGSAAINSSEQAMYVLELLQTSAALAMTGPASSRPSSLPLSSAQERLSSSLHATLFQASYSLQTVLENDVEDAWLREARDWIMTALRKRKTFSERTLGDLAILDLNTSETDSIPAEYSTASAISSLEGDREGFARKQEEQGIQQQQELCEEKREAFLTHLAFTMLIKTRRPASHKCVAELTRFLLQNVISPDFPSGNIAQNQVHACLRELISNPTFLAYRAGRMEHWDEARRRVVVAYVCATLEAYPKTVKFKDLTYCVGACIGATPTEADPAGQALVLYYTYLMQKRALALWKSRAVDEEG----------TSVMDIATRNLISLLFQSLLICPLTVFETILRDVAESFVLKGLIGAPEKRVAVLELLKRIVFGEVEPVRQNIIAKWYLALLRDEEDLRFRETTYRSENAKENGPEG 928
The following BLAST results are available for this feature:
BLAST of NO07G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27137.12.100e-20445.09hypothetical protein Naga_100010g34 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000690NSK000690Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01970.1NO07G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580637gene_2518Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g34gene3354Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01970.1NO07G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01970 ID=NO07G01970|Name=NO07G01970|organism=Nannochloropsis oceanica|type=gene|length=2880bp
ATGGGCTTCCAGAGCCTGTGGCAGCTTGTCCGGCACTTGTCTGTGTCTCC
ATCCTTCGTCTCAAACGATACATTATCGTTGCCCTCCTCCTTGGACGCCT
CGACCCCCTCCACCGCCCTCTTCGATTGGTTACGGGAAAATGTGTGGCGC
CTATGGCCGGTATCATTATATGCTAAGGAGCTAATGCATTTACAGTCCAT
TCTAAAGCTGTTGCTGGCACGTACAGGACCTCGTTGGGAATGGGAGCCTC
AGGAAATGCAGGTCCTCCTCTCAGTCCTCCGTCAAGCCATCAACGCGGCC
GCCAGTCCAGGCACGCCTCCGGTAGCATCGAATTCTTATGAGCTAATTTC
GGACTGTCTGGAAATCTGTGTGCGCTGGGCCTCTGCCAGGCTTGTAGACG
CTTCTGAATTGCGAAACGAGGTGGTGCATGCCGCCGCCAAGCTTGCGAGC
GAGGCGGCGTGTCAGACCTTTGGGAGCTGCAACCTTGATGGAGAGGAAAA
AAATACAGCCGGACAGGCTGCAAGTTTGATGCAGCAGGCATTACACCTAT
GGGTTTTGGTGGGTCGACTCCGCTCTTGTCCAATTCGGGATGTCGTCGAT
CAGGTTGCTCGACTTATGGCGTGGCCAGGGGCAGCGGCATGTTTATTAGA
TTATGGGGGTCCCACGGTGTGGCGTGATGTATTAAAAGCACTTCTACTAG
ACTTGACTGACGCAAATGCCGAATTGCTTTCTGCTACGGATGTGGAATAC
CGTTTGGTGCGTGTATGTATGGGTGTAGTTGCTGGAAGTTCGCACATATG
GGCTTGGGACGCGTGGGCCGAAATATTGATGCAGCTGCCGGAGGACGAGG
AAGAGGTAGTTGACAATGTGCTCTGGCCGGCAGACTCAGTGGGATGGCGA
AGGGAAAGTGCTACTTACGCGGTTTTGGAAGCGATGGATGCCCCGACCAG
TTGGCAGGACCGGGCCACGGCGAGCGTGGGAGCGGTGGCCTTGCTCTCTG
GCCGGTTTGATGATGATAGGTTATGGAAAAAGCTACTGGGTTTGCTCAAA
GATGTGATACGTCATAGTGTGCATTCACCGTCTGCACACTGTAGCAAGGA
AGGGGAGGGGGAGGAATGGGAGGGCTTACGAATGGCGCGAGTGGGGTTGT
GTCGTGCCTTGGTCATGCTGGGGAATTCCCGTTTTTGTGCACGTTCGTTC
GAGGGCGAGTCGAGAGCCTGGACGAGGGAATGGGGCGTCTGTCTCACTAC
TCTCTTAACGTTGTCGTTCGATGACGTTGTGGTAGCTGCAGACATGGTGA
GCAACGTACATAGCAGGGACGGCAACATGAACAGCATCGGCAGTTCCAGC
TTCAATGGCATCAATAGCAGCAATATAAGCAATAGTATTGGCAGTAGCAG
CAGCTTCAGCAGCAGCAAGCAACCACAGCACAATAAACAGGTCGATATCC
TAGCTGCGAATATATGTGAACGTTGCTTAAGTCCGGTCGGAAATCGACAA
CATGAAATGGCCAAAGCCATCACTGCCCTGTTCAAGGCATCGGATGCTAT
TGGGCAAATAGAAGCGTTCTCCATCCTTCGCTCTAATGCTCGCACCGTAA
TCACTGCCGATATCACGGGCGGTAAGAGCGGTACGTACCCGTGGGGCCTC
GTCCTCCTCCTACAGATATGCTTGGTGCTGAGCGACCCGGCTTCAGCAGC
GATTGCTTCCACCGGGCAGGTTATTTGGGTGCTGGAGGTGTTGGACACGG
TGGCCGCATTGGTAGGCCCTGCCTCGCCCCCATCCATTCTACAAGATACC
CTGTTGCAGGCGTCGGGGAATCTACAAGCGGTGTTAGAGGATGATGTAGA
GGAGGGATGGTTGAAGGAGGCTAGGGATTGGATAATGAAGGCCTTAGGTA
GGCAGAAGGAACGTGCGAAACAACGGGCAAAGGAAATGGCATCCTTGGGA
ATAGGAAGTTGCAGCGACAAAAGTAACAGCACAGATAGTAGCAGTGAGAC
CCCTGCTTTAGGCTCCAAAAGGGGGGAACAGATCCAAAACGAGCAGCAGC
AGCATCAAGAAGAGAACCGTCTCGCATTCCTCATCAACCTGGCCTTCGCT
ATGTGCATCCAAACTCGACGACCCGCTCCTCACCACTACGTCGCCGAGCT
AACCCGTTTTTTGCTACAAGAAGTCCTATGTCCTTACTTCCCGAAACGGG
GAGTGGCCCAAGCCCAGGTACACAGGTGCTTGCGCAGCCTCATCTCTCAC
CCTAATCTGTTAGCCTACCGGGCAGGGCGGATAAGGCACTGGGACGAGGC
CCGGCGGCGAGTAATGGCTACCTATGTCCGAGTGTCTCTGGAAGCTTACC
CAACCAGCACCGCTTTCCAAGACCTGGCTTACTGTGTAGGGGCAGTTATT
GGTGCCACCCCAACAGAGGGGGACCCTGGCGGCCAAGCCCTCCTCCTGCA
TTGCCTACACCTGATTCAAGACCGGGCTCTTGCTCTTCTTCGGCGCGAGA
TTCCGGGTGAAAAAGGCATGCGCGAGGGTGGGATGGACCCTGGCCCTGCA
CAGCTTCGGCGACCAGAGACGCGAAAATTGGTCAAGCTTCTATTTCAAAC
CCTCCTTGTGTGCCCGTTTTCGGTGTTGGAGGTGGCATTGCAGAGTTTGG
GCAAGAATTTTTTATTGCAAGGCTTTGAAGGTCGGCCAGAAAGCTACGTG
GCCGTGCTGCGAGTACTCAAGGATGTAGTGTTCGGGGACGTCGAGACCAT
GCGACAAAGTGTGCTGGCTAAATGGTACCTCACCCACTTGCGGGAGAAGG
AAAACCTCCATCAAGAAGAGCGCAGTACTGGAGTCAAACATCGGGCAACA
TCAGGAATGACCATCACAAGTCGATTATGA
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protein sequence of NO07G01970.1

>NO07G01970.1-protein ID=NO07G01970.1-protein|Name=NO07G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=960bp
MGFQSLWQLVRHLSVSPSFVSNDTLSLPSSLDASTPSTALFDWLRENVWR
LWPVSLYAKELMHLQSILKLLLARTGPRWEWEPQEMQVLLSVLRQAINAA
ASPGTPPVASNSYELISDCLEICVRWASARLVDASELRNEVVHAAAKLAS
EAACQTFGSCNLDGEEKNTAGQAASLMQQALHLWVLVGRLRSCPIRDVVD
QVARLMAWPGAAACLLDYGGPTVWRDVLKALLLDLTDANAELLSATDVEY
RLVRVCMGVVAGSSHIWAWDAWAEILMQLPEDEEEVVDNVLWPADSVGWR
RESATYAVLEAMDAPTSWQDRATASVGAVALLSGRFDDDRLWKKLLGLLK
DVIRHSVHSPSAHCSKEGEGEEWEGLRMARVGLCRALVMLGNSRFCARSF
EGESRAWTREWGVCLTTLLTLSFDDVVVAADMVSNVHSRDGNMNSIGSSS
FNGINSSNISNSIGSSSSFSSSKQPQHNKQVDILAANICERCLSPVGNRQ
HEMAKAITALFKASDAIGQIEAFSILRSNARTVITADITGGKSGTYPWGL
VLLLQICLVLSDPASAAIASTGQVIWVLEVLDTVAALVGPASPPSILQDT
LLQASGNLQAVLEDDVEEGWLKEARDWIMKALGRQKERAKQRAKEMASLG
IGSCSDKSNSTDSSSETPALGSKRGEQIQNEQQQHQEENRLAFLINLAFA
MCIQTRRPAPHHYVAELTRFLLQEVLCPYFPKRGVAQAQVHRCLRSLISH
PNLLAYRAGRIRHWDEARRRVMATYVRVSLEAYPTSTAFQDLAYCVGAVI
GATPTEGDPGGQALLLHCLHLIQDRALALLRREIPGEKGMREGGMDPGPA
QLRRPETRKLVKLLFQTLLVCPFSVLEVALQSLGKNFLLQGFEGRPESYV
AVLRVLKDVVFGDVETMRQSVLAKWYLTHLREKENLHQEERSTGVKHRAT
SGMTITSRL*
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Synonyms
Publications