NO07G01940, NO07G01940 (gene) Nannochloropsis oceanica

Overview
NameNO07G01940
Unique NameNO07G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1744
Alignment locationchr7:566860..568603 -

Link to JBrowse

Properties
Property NameValue
DescriptionNudix hydrolase 13
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:566860..568603 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of NO07G01940 vs. NCBI_GenBank
Match: EWM27196.1 (nudix hydrolase 13 [Nannochloropsis gaditana])

HSP 1 Score: 241.1 bits (614), Expect = 3.500e-60
Identity = 122/179 (68.16%), Postives = 139/179 (77.65%), Query Frame = 0
Query:    1 MLTTRPMSTTPRMGRQLQRYEGDVRLISGCIPLTQDGNVVLISSRSGRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGEACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALREL-LQIL-----------------PHYQLHGAGSH 162
            ML  RP+STTPRMGRQLQRY G+VRLI+GCIPLT DGNVVLISSR+G WILPKGGWERDETAREAAARETYEE GV G V  EP +E SYR+KRGE C LLLF+MEV+E+L +WPESSVR+R+L SLS+AI++CGKEEHR AL  + LQ L                  H +LHGAGSH
Sbjct:    1 MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLELHGAGSH 179          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_011463304.1 (PREDICTED: nudix hydrolase 12, mitochondrial-like [Fragaria vesca subsp. vesca] >XP_011463305.1 PREDICTED: nudix hydrolase 12, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 120.2 bits (300), Expect = 8.900e-24
Identity = 74/186 (39.78%), Postives = 95/186 (51.08%), Query Frame = 0
Query:   10 TPRMGRQLQRYEGDVRLISGCIPLTQDGNV------------VLISSRSGR--WILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQLHGAGSHLDTNFGPRLRADA 175
            T R GRQ QRYE  +RL+SGCIP   +  V            VL+ S   R   + PKGGWE DET  EAA RE  EE+GV+G +G  PL +  +RSK  +        C+  +F + VTE L  WPE ++  RK  S+ DA   C  +  R ALR+LL  L            +T +GPR   DA
Sbjct:    5 TARTGRQRQRYEDQLRLVSGCIPYKFEETVGSSNCNVEKKLLVLMISSPNRDDLVFPKGGWENDETMHEAACREALEEAGVKGVLGETPLGQWEFRSKSKQNNGSLQGGCRGYMFALRVTEELDSWPEQAIYGRKWVSIEDAFRFCRYDWMREALRKLLTSLSE----------NTEYGPREELDA 180          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_022005691.1 (nudix hydrolase 13, mitochondrial-like isoform X1 [Helianthus annuus] >OTF98976.1 putative NUDIX hydrolase domain-like protein [Helianthus annuus])

HSP 1 Score: 118.2 bits (295), Expect = 3.400e-23
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 0
Query:    8 STTPRMGRQLQRYEGDVRLISGCIPL------TQDGNVVLISSRSGR--WILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQIL 151
            S   R GR LQRY+ ++RL+SGCIP        QD   VL+ S   R   + PKGGWE DET  EAA RE  EE+GVRG +    L E  +RSK  +        C+  +F++EVTE L  WPE + R RK  ++ +A  VC  E  R AL E ++++
Sbjct:    3 SIVARTGRHLQRYDNNLRLVSGCIPFRLTKPKDQDKIEVLMVSSPNRDDMVFPKGGWESDETVEEAACREALEEAGVRGVIKGNSLGEWEFRSKSKQEACSEEGGCKGYMFVLEVTEELETWPEQNNRNRKWVTIEEAFVVCRYEWMRNALEEFVKVM 160          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_017244421.1 (PREDICTED: nudix hydrolase 13, mitochondrial isoform X2 [Daucus carota subsp. sativus])

HSP 1 Score: 117.1 bits (292), Expect = 7.500e-23
Identity = 66/172 (38.37%), Postives = 92/172 (53.49%), Query Frame = 0
Query:   12 RMGRQLQRYEGDVRLISGCIP-------------LTQDGNVVLISS-RSGRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQLHGAGSHL 163
            R GRQ QRYE ++RL+SGCIP             L     V++ISS      + PKGGWE DET  EAA RE  EE+GV+G +  + L + ++RSK  +        C++ +F +EVTE L  WPE     RK   + DA  +C  +    AL + L+++   + HGAG  L
Sbjct:    7 RKGRQRQRYEDNLRLVSGCIPYRVVRNNAEDSFDLESSLEVLMISSPNRDDLVFPKGGWENDETVEEAACREALEEAGVKGIIKGDSLGDWTFRSKSRQESGCLEGGCKVCMFALEVTEELDAWPEQENHDRKWLFIKDAFQLCRYKWMSTALEKFLEVMATEEKHGAGQSL 178          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_021828246.1 (nudix hydrolase 12, mitochondrial-like isoform X2 [Prunus avium])

HSP 1 Score: 117.1 bits (292), Expect = 7.500e-23
Identity = 68/163 (41.72%), Postives = 91/163 (55.83%), Query Frame = 0
Query:   10 TPRMGRQLQRYEGDVRLISGCIP-------------LTQDGNVVLISSRS-GRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILP 152
            T R GRQ QRYEG +RL+SGCIP               +D  V++ISS S    + PKGGWE DET  EAA RE +EE+GV+G +G  PL +  +RSK  +        C+  +F MEVTE L  WPE +   RK  ++ +A   C  +  R AL++ +  LP
Sbjct:    5 TARTGRQRQRYEGHLRLVSGCIPYKFEKSVGGSNCSTEKDLLVLMISSPSRDDLVFPKGGWEDDETMSEAACREAWEEAGVKGVLGETPLGDWEFRSKSKQNSCSLQGGCRGFMFAMEVTEELDSWPEQANYGRKWLTIEEAYRACRYDWMREALKKFVTALP 167          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_009353496.1 (PREDICTED: nudix hydrolase 12, mitochondrial-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 115.9 bits (289), Expect = 1.700e-22
Identity = 71/171 (41.52%), Postives = 92/171 (53.80%), Query Frame = 0
Query:   10 TPRMGRQLQRYEGDVRLISGCIPL---TQDGN------VVLISSRS-GRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQLHGAGSHLD 164
            T R GRQ QRY+G +RL+SGCIP      DG+      V++ISS S    + PKGGWE DET  EAA RE  EE+GV+G +G  PL    YRSK  +        C+  +F MEVTE L  WPE +   RK  ++ +A   C  +  R ALR+    L   + +     LD
Sbjct:    5 TARTGRQRQRYDGHLRLVSGCIPYRFEKSDGSIEQKLLVLMISSPSRDDLVFPKGGWEDDETMSEAACREALEEAGVKGVLGDNPLGAWEYRSKSKQKSCSLQGGCKGFMFAMEVTEELDSWPEQANYGRKWLTIEEAFRSCRYDWMREALRKFATALSETRENDTRKELD 175          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_024194200.1 (nudix hydrolase 12, mitochondrial-like isoform X2 [Rosa chinensis] >PRQ39743.1 putative diadenosine hexaphosphate hydrolase (AMP-forming) [Rosa chinensis])

HSP 1 Score: 115.5 bits (288), Expect = 2.200e-22
Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 0
Query:   10 TPRMGRQLQRYEGDVRLISGCIPLTQDGNV------------VLISSRSGR--WILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQLHGAGSHLD 164
            T R GRQ QRYE  +RL+SGCIP   +  V            VL+ S   R   + PKGGWE DET  EAA RE  EE+GV+G +G  PL +  +RSK  +        C+  +F + VTE L  WPE ++  RK  ++ DA   C  +  R ALR+LL  L     +G    LD
Sbjct:    5 TARTGRQRQRYEDQLRLVSGCIPYRFEETVGSSNCNVEKKLLVLMISSPDRDDLVFPKGGWENDETMHEAACREALEEAGVKGVLGETPLGQWEFRSKSKQNNGSLQGGCRGYMFALRVTEELDSWPEQAIYGRKWVTVEDAFKFCRYDWMREALRKLLIALSDNTENGPREELD 179          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_023881653.1 (nudix hydrolase 13, mitochondrial-like isoform X2 [Quercus suber] >POF27239.1 nudix hydrolase 13, mitochondrial [Quercus suber])

HSP 1 Score: 114.0 bits (284), Expect = 6.400e-22
Identity = 68/168 (40.48%), Postives = 89/168 (52.98%), Query Frame = 0
Query:    8 STTPRMGRQLQRYEGDVRLISGCIPL------------TQDGNVVLISSRSGR--WILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQ 155
            S   R GR  QRYEG+ RL+SGCIP              +DG  VL+ S   R   + PKGGWE DET  EAA RE +EE+GV+G +  +PL E  +RSK  +        C+  +F +EVTE    WPE   R RK   + +A  +C  E  R AL E L+++   Q
Sbjct:    7 SEPARTGRLRQRYEGNYRLVSGCIPYRVSKEENEHSGEKEDGIEVLMVSSPNRDDLVFPKGGWEDDETKEEAACREAFEEAGVKGKLKEKPLGEWVFRSKSKQDICSLEGGCKGYMFALEVTEEHDTWPERGNRDRKWLKIKEAFRLCRYEWMREALEEFLRVMAEDQ 174          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_023881589.1 (nudix hydrolase 13, mitochondrial-like isoform X1 [Quercus suber])

HSP 1 Score: 114.0 bits (284), Expect = 6.400e-22
Identity = 68/168 (40.48%), Postives = 89/168 (52.98%), Query Frame = 0
Query:    8 STTPRMGRQLQRYEGDVRLISGCIPL------------TQDGNVVLISSRSGR--WILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQ 155
            S   R GR  QRYEG+ RL+SGCIP              +DG  VL+ S   R   + PKGGWE DET  EAA RE +EE+GV+G +  +PL E  +RSK  +        C+  +F +EVTE    WPE   R RK   + +A  +C  E  R AL E L+++   Q
Sbjct:    7 SEPARTGRLRQRYEGNYRLVSGCIPYRVSKEENEHSGEKEDGIEVLMVSSPNRDDLVFPKGGWEDDETKEEAACREAFEEAGVKGKLKEKPLGEWVFRSKSKQDICSLEGGCKGYMFALEVTEEHDTWPERGNRDRKWLKIKEAFRLCRYEWMREALEEFLRVMAEDQ 174          
BLAST of NO07G01940 vs. NCBI_GenBank
Match: XP_006468932.1 (PREDICTED: nudix hydrolase 12, mitochondrial [Citrus sinensis])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 67/169 (39.64%), Postives = 91/169 (53.85%), Query Frame = 0
Query:    7 MSTTPRMGRQLQRYEGDVRLISGCIP--LTQDG-----------NVVLISS-RSGRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGE-------ACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQILPHYQ 155
            MS   R GR  QRY+ + RL+SGCIP  LT+D             V+++SS      + PKGGWE DET  EAA RE  EE+GVRG +  +PL    +RSK  +        C+  +F +EVTE L  WPE   R RK  ++ DA  +C  E  R AL + ++++   Q
Sbjct:    1 MSVEARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENEDIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKVMSEEQ 169          
The following BLAST results are available for this feature:
BLAST of NO07G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27196.13.500e-6068.16nudix hydrolase 13 [Nannochloropsis gaditana][more]
XP_011463304.18.900e-2439.78PREDICTED: nudix hydrolase 12, mitochondrial-like ... [more]
XP_022005691.13.400e-2342.41nudix hydrolase 13, mitochondrial-like isoform X1 ... [more]
XP_017244421.17.500e-2338.37PREDICTED: nudix hydrolase 13, mitochondrial isofo... [more]
XP_021828246.17.500e-2341.72nudix hydrolase 12, mitochondrial-like isoform X2 ... [more]
XP_009353496.11.700e-2241.52PREDICTED: nudix hydrolase 12, mitochondrial-like ... [more]
XP_024194200.12.200e-2240.00nudix hydrolase 12, mitochondrial-like isoform X2 ... [more]
XP_023881653.16.400e-2240.48nudix hydrolase 13, mitochondrial-like isoform X2 ... [more]
XP_023881589.16.400e-2240.48nudix hydrolase 13, mitochondrial-like isoform X1 ... [more]
XP_006468932.11.100e-2139.64PREDICTED: nudix hydrolase 12, mitochondrial [Citr... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000687NSK000687Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01940.1NO07G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330773gene_2515Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g37gene3356Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01940.1NO07G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01940 ID=NO07G01940|Name=NO07G01940|organism=Nannochloropsis oceanica|type=gene|length=1744bp
ACAGGCTCTCCAGCCGCCGTCCCCCTCCAGTGTTGCTCCTGAGCAGCCTA
CGAGAAGCATCAAGAATGCGTCTGGTTTAGCCTCGTCTAGGTGAGCCTTA
GTGCACAAGACACCACACACGACTCCACACACTACCACCGCGACCCCAGC
ACCAGTACCAATAGCGGCACCAACATCATTATTGACATTCGCCCTCAGCA
GACCCGAGCGAACCAGCTTCCTTCAGAGCGAGGAGACAAGAAACTATGCC
CTGCACTTCAGGCTAAACCGCTAGTCTGTCTCCCCGATTCCAAGCCCGGA
GGCAAACATATACTCTACACGTGCAGAGAGCAGAGATATTAAAGAGGGTC
TGAAACTGTGGTCGACTGAGAGCGAAAGAAACGTCCCAATAACGACACCG
AAGGATAAAGATAGACAAGCGTGTATAGAATCAGAACTAGAAGGTGAAAA
AAAAAGGAGGAACGATCGACAAGCTACGAAGCAACGAACATGCTGACTAC
AAGGCCAATGTCGACAACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACG
AAGGCGATGTGCGGCTTATCAGTGGgtacgtttacttgggagactttcgc
gctgaaagtgattgagcgtaagcctatttaccactaggtaaacaccagtt
ggcccgcacacttctacactacttgaatctttcacggcaaaaacagtatc
aatgaacttacctcccactctttttccccctcccacgatacttccttcca
cagATGCATTCCCCTGACGCAAGATGGCAACGTCGTCTTAATCAGCTCGA
GGAGTGGAAGATGGATTCTTCCCAAGGGAGGATGGGAAAGGGACGAGACA
GCGCGGGAGGCAGCGGCCAGGGAGACATACGAGGAGAGTGGAGTGCGTGG
GTTTGTGGGCCTTGAACCTTTGGCTGAAATTTCATATCGAAGCAAGAGAG
GTGAGGCGTGCCAACTGTTGCTGTTCATGATGGAGGTGACAGAGATACTG
ACGGAGTGGCCTGAATCTTCGGTGCGGCAGCGGAAGCTTTTCTCCTTGAG
CGACGCTATCAACGTGTGTGGAAAGGAGGAGCACCGAGGCGCGCTACGTG
AACTTTTGCAAATCTTGCCACATTACCAGCTGCACGGTGCAGGTAGCCAC
CTTGACACCAACTTTGGGCCCAGGCTGAGAGCTGATGCCGCGATGCCAAC
GGTGGCAACATGTACCCGCAACAGCAGCAGCGCGATGCAACAGGTGGCAA
CATGTGCCCCCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGCAGCAGC
AGCAGCAGCAGCGGTGGGAATGTGGCGGGGCCCATGTCCATCTCCTCCAG
GCGCTTGGTTGTCGATGACCAAAAGGAGTAGGCCGTGCAGAAACAAGAAC
AAGGAATAAGAAGAAGACATTGTTGATATATTATAAAAAGGAGGAAGGGC
TTAAGGGTTTACTTAGAATGTGCGGACAGGTTTCTGGGACATTAATGGCA
GATACGGAGAAAAGAGTCAAAGGTAGAGAACTTTTAATGTGTAGTAGACA
TTTTTAATCATTTAATTTTATTCAGGTCTGGATGGTTTTGATGAACACCA
AGAAAGGAGCTCGGCTGCGTTGTCCTCCGAGGCAGGAGGTTGGTTTTGAC
GGGAGTAGCAACGATGAAGTGAAACAACCTTGAAGCGGTTGGAGGATGTG
TCCTCTAGTTCAGGCTGGTCACTGCTACTCTTAATTCTCGCTCT
back to top

protein sequence of NO07G01940.1

>NO07G01940.1-protein ID=NO07G01940.1-protein|Name=NO07G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MLTTRPMSTTPRMGRQLQRYEGDVRLISGCIPLTQDGNVVLISSRSGRWI
LPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGEACQL
LLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQIL
PHYQLHGAGSHLDTNFGPRLRADAAMPTVATCTRNSSSAMQQVATCAPSS
SGSSSSSSSSSSSSSGGNVAGPMSISSRRLVVDDQKE*
back to top
Synonyms
Publications