NO07G01900, NO07G01900 (gene) Nannochloropsis oceanica

Overview
NameNO07G01900
Unique NameNO07G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1804
Alignment locationchr7:559051..560854 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:559051..560854 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO07G01900 vs. NCBI_GenBank
Match: XP_005856407.1 (hypothetical protein NGA_2119400, partial [Nannochloropsis gaditana CCMP526] >EKU19964.1 hypothetical protein NGA_2119400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 435.3 bits (1118), Expect = 2.700e-118
Identity = 226/381 (59.32%), Postives = 278/381 (72.97%), Query Frame = 0
Query:   70 GPLERMIKRALHGFALFLSFTFLGVLLLVLKGLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRTRDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTAHILLALSLE-------RAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVTLDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGWRGRWG 444
            GPLER +K AL GFA++L+ TFLGV+ LVLK L FDK+   A+       Y  +F PFW AD V W++V   L  TCSLRT  V+ + R M   + +EAQ T+S EM PL Q+++RALL  TPFL+C+T AHILL + L+       R  V LWLA++P+V+W+ LAL+S  CLRTGSFSKALGW L+L +TL +GLRFS+PP  L  +    A   APLW+ FTPFWAL+ILLL  L+YV++QACC RRYRL+SQHV+C++LY  SL  L L+SV+ AWRH  WE  L+HALR +NFS+TL+GIA  C VGF ELG YL+AA+E E L TS+GYEDPMPLSRTARGWEPTGA  SNWLLLGR+EETA LMRRGG  G  G
Sbjct:   34 GPLERTMKWALTGFAIYLALTFLGVVFLVLKSLEFDKLPPFARTGLILKGYWLIFTPFWAADLVAWMVVLWALHWTCSLRTSGVQHESRIMAPSSHREAQKTLSTEMLPLFQIVMRALLNATPFLLCITAAHILLFIFLQSGGGNFGRPWVSLWLAILPIVLWEMLALISAICLRTGSFSKALGWLLILFATLMVGLRFSSPPFPLSSIPCIRAAHNAPLWVTFTPFWALEILLLATLVYVSIQACCARRYRLSSQHVSCIILYTSSLGFLALASVMFAWRHGTWESGLNHALRLQNFSDTLSGIATLCAVGFAELGFYLVAADEVEHLTTSHGYEDPMPLSRTARGWEPTGARVSNWLLLGRLEETARLMRRGGLAGTSG 414          
BLAST of NO07G01900 vs. NCBI_GenBank
Match: EWM27151.1 (hypothetical protein Naga_100010g42 [Nannochloropsis gaditana])

HSP 1 Score: 435.3 bits (1118), Expect = 2.700e-118
Identity = 226/381 (59.32%), Postives = 278/381 (72.97%), Query Frame = 0
Query:   70 GPLERMIKRALHGFALFLSFTFLGVLLLVLKGLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRTRDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTAHILLALSLE-------RAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVTLDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGWRGRWG 444
            GPLER +K AL GFA++L+ TFLGV+ LVLK L FDK+   A+       Y  +F PFW AD V W++V   L  TCSLRT  V+ + R M   + +EAQ T+S EM PL Q+++RALL  TPFL+C+T AHILL + L+       R  V LWLA++P+V+W+ LAL+S  CLRTGSFSKALGW L+L +TL +GLRFS+PP  L  +    A   APLW+ FTPFWAL+ILLL  L+YV++QACC RRYRL+SQHV+C++LY  SL  L L+SV+ AWRH  WE  L+HALR +NFS+TL+GIA  C VGF ELG YL+AA+E E L TS+GYEDPMPLSRTARGWEPTGA  SNWLLLGR+EETA LMRRGG  G  G
Sbjct:   79 GPLERTMKWALTGFAIYLALTFLGVVFLVLKSLEFDKLPPFARTGLILKGYWLIFTPFWAADLVAWMVVLWALHWTCSLRTSGVQHESRIMAPSSHREAQKTLSTEMLPLFQIVMRALLNATPFLLCITAAHILLFIFLQSGGGNFGRPWVSLWLAILPIVLWEMLALISAICLRTGSFSKALGWLLILFATLMVGLRFSSPPFPLSSIPCIRAAHNAPLWVTFTPFWALEILLLATLVYVSIQACCARRYRLSSQHVSCIILYTSSLGFLALASVMFAWRHGTWESGLNHALRLQNFSDTLSGIATLCAVGFAELGFYLVAADEVEHLTTSHGYEDPMPLSRTARGWEPTGARVSNWLLLGRLEETARLMRRGGLAGTSG 459          
BLAST of NO07G01900 vs. NCBI_GenBank
Match: CBJ33006.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 2.400e-10
Identity = 99/397 (24.94%), Postives = 165/397 (41.56%), Query Frame = 0
Query:   69 AGPLERMIKRALHGFALFLSFTFLGVLLLVLK-GLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLR---TRDVRDDRRHMVRLTAKEAQNTIS--------------------LEMFPLVQVLVRALLTVTPFLICVTTAHILLALSLERAQ----VPLWLAL-MPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWL-AFTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVT-----LDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEETA 431
            + P+E  ++    G    L   F GV+LLVL+    +    G A+     +    VF PFWV D +  +++ + +    ++R       R  RR   R  +  + N +S                    L+ FPL+Q ++   +     L+  TT  +L+ L   R      VP  L +  PL++ +   LL    +RT  +   L W L+   T+ + LR         D A    G ++  WL    P W + +L   +  YVA       R+ +      C  L   +LA  T++ +L+   H   +++     L++          +A +  FC      L ++L       +LI ++GY+DP+PL  T  GWE +GAG ++W LLG V   A
Sbjct:   83 SNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRGTAEPEYDESPQWLVFSPFWVGDGLALLVLVRVMAKVTNIRFVTPARSRGARRGDARSRSTGSLNDLSGHGSNAGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVVAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSGDDADGA--SGGLQSYPWLECLAPLWVVDLLYAGVAGYVAANTMA-GRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHRLHKLSDKVPRLEYLRLDMPLLLAVASLMAFC------LAVFLSVEHSVSMLINTHGYDDPLPLCETPSGWEWSGAGKASWGLLGDVSVRA 470          
BLAST of NO07G01900 vs. NCBI_GenBank
Match: XP_008873337.1 (hypothetical protein H310_09129 [Aphanomyces invadans] >ETV97776.1 hypothetical protein H310_09129 [Aphanomyces invadans])

HSP 1 Score: 68.6 bits (166), Expect = 6.600e-8
Identity = 99/362 (27.35%), Postives = 156/362 (43.09%), Query Frame = 0
Query:   73 ERMIKRALHGFALFLSFTFLGVLLLVLKGLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRTRDVRDDRRHMVRLTAKEAQNTISLE-MFPLVQVLVRALLTVTPFLICVTTAHILLALSLER-AQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPL-WL-AFTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVTLDHALRFRNFSE-TLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEET 430
            E+ +   L+G  +++   FLG  L+ L     D + G    P    ++ AVF PFWV +    VMVG  ++   S+R      + RH          +T+S E + PL++ ++       P  I +  A I     L   + V +++A  P++I +   ++     ++ +    + W L+ + TL L             VA   A D + L W+  F P + LQ LLLF  L V L       Y+L    V    LY  +L  +T+  V++    +A       A      SE  +  + LF G      GLYL+  +E   L+ S G   P+PL+RTA GW    A    W+LLG +  T
Sbjct:   74 EKSLAVLLNGVMIYVMCMFLGFGLVALNA---DNVLG----PARHWNWWAVFSPFWVGNL---VMVGAHVL---SIR---AATELRHWAE------TDTVSNEPLLPLLRKILLLYAVSLPLCILLFWAEIAFCAILNNSSNVSVYVAYAPIMIIEVGYVVRYLLCKSRTTLPGIAWILLFVFTLLLAHNSG--------VAATNAPDASGLPWVGVFAPLFVLQ-LLLFGSLVVVLYMQAAGLYKLNQTQVRATALYTVALVAVTIGQVMLVQHMEA------QAGPATTTSEMDVPSLLLFTGWVLASSGLYLVCRQEVMKLMASRGGAVPVPLTRTAGGWVTHHAVVDRWMLLGDIALT 398          
BLAST of NO07G01900 vs. NCBI_GenBank
Match: XP_009829638.1 (hypothetical protein H257_06194 [Aphanomyces astaci] >ETV80691.1 hypothetical protein H257_06194 [Aphanomyces astaci])

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-7
Identity = 92/366 (25.14%), Postives = 157/366 (42.90%), Query Frame = 0
Query:   73 ERMIKRALHGFALFLSFTFLGVLLLVLKGLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRTRDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTAHI-LLALSLERAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPL-WLA-FTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVTLDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEETATLMRR 436
            E+ +   L+G  +++   F+G  L+ L     D + G    P    ++  VF+PFWVA+ V        ++G   L  R   + R+        E     +  + PL++ ++       P    +  A +   A+  + + + +++A  PL+I +   ++     ++ +    + W  +LL T TL L  ++        A P + + A L W+A F P + LQ L+LF  L V L       YRL S  V    LY+ +L   T   +++  +H   +   D A         +  + LF        GLY++  +E   L+ S G   P+PL+RTA GW    A    W+LLG V  T   + R
Sbjct:   73 EQSLAVLLNGVMIYVMCVFVGFGLIALNA---DNVLG----PARHWNWWVVFLPFWVANLV--------MLGAHVLSIRAATELRQW------AETDMMSNEPLLPLLRKILLLYAVSMPLCFLLFWAEVAFCAILSDSSDISVYVAYAPLMIIEVGYVVRYLLCKSRTTLPGVSW--ILLFTFTLLLAHNSD-----IAAKPTSANSAGLPWVAVFAPLFVLQ-LVLFGSLAVVLYMQAAGLYRLNSTQVRATALYSIALVAATTGQIMLV-QHMELQQGADRATA---TEMDVPSLLLFTAWIVASAGLYIVCRQEVAKLMASRGGAVPVPLTRTADGWVTNHAVMDRWMLLGDVSLTGVGLAR 405          
The following BLAST results are available for this feature:
BLAST of NO07G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005856407.12.700e-11859.32hypothetical protein NGA_2119400, partial [Nannoch... [more]
EWM27151.12.700e-11859.32hypothetical protein Naga_100010g42 [Nannochlorops... [more]
CBJ33006.12.400e-1024.94expressed unknown protein [Ectocarpus siliculosus][more]
XP_008873337.16.600e-827.35hypothetical protein H310_09129 [Aphanomyces invad... [more]
XP_009829638.11.500e-725.14hypothetical protein H257_06194 [Aphanomyces astac... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000683NSK000683Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01900.1NO07G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628555gene_2511Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g42gene3360Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01900.1NO07G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01900 ID=NO07G01900|Name=NO07G01900|organism=Nannochloropsis oceanica|type=gene|length=1804bp
ATGTCTTCGCGACGGGGACAAGGCATTGGAAAGAGCGGTAATGTGGGCAG
AGGAGATACAGAGACTTCTCGGTTATTGGCGGGCGAGCGGGCGAGTGGAG
GCGGCACCTTTTCGACTACCAGTCCCCAACAACAGCAGCACCATGCCCAC
ATCCAGGTATTTTATCAGCAGCAGTACCATCAGGATCAGCAACAGCAGCA
GGGAGCGGGCCCACTGGAGCGCATGATCAAGCGGGCGCTCCATGGCTTCG
CTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCCTTCTCCTCGTGCTCAAA
GGCCTTGGTTTCGACAAAATGTCAGGCTTAGCGAAACTACCACCGGCCGC
GACGAGTTACTTGGCGGTGTTTGTGCCATTCTGGGTCGCCGATTTTGTGG
GCTGGGTCATGGTGGGGCAGACGTTGATTGGCACCTGCTCTTTGCGTACC
CGGGACGTGCGGGACGACCGGCGACATATGGTCCGTCTCACGGCCAAGGA
GGCCCAAAATACCATCAGCCTTGAAATGTTCCCTTTGGTGCAAGTCTTGG
TCCGGGCTTTGCTAACTGTAACGCCCTTCTTGATATGCGTCACGACTGCG
CATATCCTGCTTGCCCTGAGCCTGGAGAGGGCCCAAGTGCCTCTATGGCT
AGCGTTAATGCCCCTCGTCATTTGGGATTTTTTGGCACTACTAAGCACAT
GGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTCTTGGGTGGTTTTTGGTC
CTTCTTTCCACCTTAACGCTTGGCCTGCGTTTCTCGACCCCACCACCACA
ACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGACGAAGCCCCGCTCTGGT
TAGCATTTACTCCCTTCTGGGCTCTACAAATCCTCCTCCTCTTCATGCTT
CTCTACGTTGCGCTTCAAGCTTGCTGCATCCGTCGCTACAGACTGACTTC
ACAGCATGTCGCCTGCTTAGTCTTGTATGCGGGCAGCCTTGCCCTTCTCA
CCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACGACGCATGGGAGGTAACC
TTAGACCACGCCTTGCGCTTTCGGAATTTTTCCGAGACACTCGCAGGGAT
TGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCTGGGACTGTATCTGTTGG
CGGCGGAGGAGGCTGAACTTTTAATAACGAGCAACGGATACGAAGACCCG
ATGCCTCTCAGTCGTACAGCCCGTGGATGGGAACCAACGGGGGCAGGAGC
GTCGAATTGGCTTTTACTTGGGAGGGTAGAGGAGACAGCGACGTTGATGA
GGAGGGGGGGGTGGCGGGGGCGGTGGGGACCGCAGCTAATGCGGCTGGTA
GGAGAATGGCGGGTGCGGCAAAAGGGGCTTTGCAGGGAGGGAGGGAAGGA
GAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAGAAGCAATTCGGGTTCGTA
CGCTGATTTGTATGATGATTTATAGGAGAGGCTTGAGGGGGGGAGGGAGG
AAGAAAGAGTCTCTTGTTCGAGAACATGCTTATTGATGTATGGATTTTTT
CCCGGTTATGATGGTTTTGATTTGCTCTCTCCAGAAATGAGTAAAGACTA
TACGTAAAAAGGGACAAAAGGGGAGAAAGAAAGACGAGCAGTCCGCGAGG
AGGTTCTTCTTCTAGGGTAAGGCAGGTGACAACAAAGCACACATGTTTTG
AGACTGGGATGAAAAGACAAATCTTGTATTTAACCAAAACAAATAGGAAA
GCAATATATAATAGAAGGTAAAATTAAAGTAGCAATTAAACAGTAGGAGC
GGCG
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protein sequence of NO07G01900.1

>NO07G01900.1-protein ID=NO07G01900.1-protein|Name=NO07G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MSSRRGQGIGKSGNVGRGDTETSRLLAGERASGGGTFSTTSPQQQQHHAH
IQVFYQQQYHQDQQQQQGAGPLERMIKRALHGFALFLSFTFLGVLLLVLK
GLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRT
RDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTA
HILLALSLERAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLV
LLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFML
LYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVT
LDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDP
MPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGWRGRWGPQLMRLV
GEWRVRQKGLCREGGKERVEKEGRSCEEAIRVRTLICMMIYRRGLRGGGR
KKESLVREHAY*
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Synonyms
Publications