NO07G01890, NO07G01890 (gene) Nannochloropsis oceanica

Overview
NameNO07G01890
Unique NameNO07G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr7:558262..559050 +

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Properties
Property NameValue
Descriptionnuclear transport factor 2A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:558262..559050 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
Homology
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: KEQ65704.1 (putative nuclear transport factor NTF-2 [Aureobasidium melanogenum CBS 110374])

HSP 1 Score: 118.2 bits (295), Expect = 1.700e-23
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 0 
Query:    6 IAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            IA  FVQ YY T D N + LGALY+D+SMLTFE     G A I++KLVGL   KV H V   D QPS + G +++LV G++ +D +  P+ + + FQL+    G YY+ N IFRL+YA
Sbjct:    7 IAEQFVQFYYKTFDENRSALGALYKDHSMLTFENSPVQGAAGITEKLVGLPFAKVQHEVSSLDAQPSNEAGGILVLVAGRLLVDEEQRPMSYTQSFQLLPDGAGSYYVFNDIFRLVYA 124
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BLAST of NO07G01890 vs. NCBI_GenBank
Match: KDB12808.1 (nuclear transport factor 2 [Ustilaginoidea virens])

HSP 1 Score: 117.9 bits (294), Expect = 2.300e-23
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 0 
Query:    4 DEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            +++A  F++ YY T D++   L +LYRDNSMLTFE    +G  +I++KLVGL   KV H V  F+ QPS D G ++ILV GQ+ +D +  P+ + + FQL     GQYY++N IFRLI+
Sbjct:    6 EDVAKQFIEFYYNTFDSDRKSLSSLYRDNSMLTFETASSLGATSIAEKLVGLPFQKVKHQVSTFNAQPSNDNGGIIILVTGQLLVDEEQRPMNYSQSFQLSRDAAGQYYVYNDIFRLIF 124
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BLAST of NO07G01890 vs. NCBI_GenBank
Match: PSS30325.1 (Nuclear transport factor 2 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 117.9 bits (294), Expect = 2.300e-23
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            M  + +A AFV+HYY T D N AGL  LY+D SMLTFE +QF+G  NI+ KL+ L   +  H +   D QPS   G +++ V G +KL G+++PL+F + F L+ +  G +Y+ N IFRL YA
Sbjct:    1 MDPNSVAKAFVEHYYSTFDTNRAGLANLYQDGSMLTFEGEQFLGAQNIAGKLLSLPFPQCQHFISTVDCQPSGPAGGMLVFVSGNLKLPGEEHPLKFSQMFHLMPTPQGSFYVQNDIFRLNYA 123
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BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_018237304.1 (hypothetical protein FOXG_03276 [Fusarium oxysporum f. sp. lycopersici 4287] >EGU75360.1 hypothetical protein FOXB_14121 [Fusarium oxysporum Fo5176] >ENH61775.1 Nuclear transport factor 2 [Fusarium oxysporum f. sp. cubense race 1] >EWY88664.1 hypothetical protein FOYG_09764 [Fusarium oxysporum FOSC 3-a] >EWZ39819.1 hypothetical protein FOZG_08781 [Fusarium oxysporum Fo47] >EWZ88082.1 hypothetical protein FOWG_09678 [Fusarium oxysporum f. sp. lycopersici MN25] >EXA40623.1 hypothetical protein FOVG_09386 [Fusarium oxysporum f. sp. pisi HDV247] >EXK34486.1 hypothetical protein FOMG_11421 [Fusarium oxysporum f. sp. melonis 26406] >EXK98743.1 hypothetical protein FOQG_01541 [Fusarium oxysporum f. sp. raphani 54005] >EXL51369.1 hypothetical protein FOCG_09371 [Fusarium oxysporum f. sp. radicis-lycopersici 26381] >EXL88743.1 hypothetical protein FOPG_00927 [Fusarium oxysporum f. sp. conglutinans race 2 54008] >EXM09485.1 hypothetical protein FOIG_02291 [Fusarium oxysporum f. sp. cubense tropical race 4 54006] >EXM35086.1 hypothetical protein FOTG_01657 [Fusarium oxysporum f. sp. vasinfectum 25433] >KNA99258.1 hypothetical protein FOXG_03276 [Fusarium oxysporum f. sp. lycopersici 4287] >CVK90814.1 probable nuclear transport factor 2 (ntf-2) [Fusarium mangiferae] >PCD33085.1 hypothetical protein AU210_009320 [Fusarium oxysporum f. sp. radicis-cucumerinum] >SCO86828.1 probable nuclear transport factor 2 (ntf-2) [Fusarium oxysporum])

HSP 1 Score: 117.5 bits (293), Expect = 3.000e-23
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 0 
Query:    4 DEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            +E+A  FV+ YY T D++  GL ALYRDNSMLTFE    +GT  I++KL GL   KV H V   D QPS D G ++IL+ G + +D +  P+ F + FQL     GQY+++N IF+L++
Sbjct:    6 EEVAKQFVEFYYNTFDSDRKGLAALYRDNSMLTFESASVLGTQAITEKLAGLPFEKVKHQVSTLDAQPSNDQGGVIILITGALLVDEEQRPMNFSQSFQLARDANGQYFVYNDIFKLVF 124
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: PNP84860.1 (hypothetical protein FNYG_01954 [Fusarium nygamai])

HSP 1 Score: 117.5 bits (293), Expect = 3.000e-23
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 0 
Query:    4 DEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            +E+A  FV+ YY T D++  GL ALYRDNSMLTFE    +GT  I++KL GL   KV H V   D QPS D G ++IL+ G + +D +  P+ F + FQL     GQY+++N IF+L++
Sbjct:    6 EEVAKQFVEFYYNTFDSDRKGLAALYRDNSMLTFESASVLGTLAITEKLAGLPFEKVKHQVSTLDAQPSNDQGGVIILITGALLVDEEQRPMNFSQSFQLARDANGQYFVYNDIFKLVF 124
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_009833748.1 (hypothetical protein H257_09279 [Aphanomyces astaci] >ETV76836.1 hypothetical protein H257_09279 [Aphanomyces astaci])

HSP 1 Score: 116.7 bits (291), Expect = 5.000e-23
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA EI   FV+ YY T DNN AGL  LY  NS LTFE     G A I  K   L K  H  +  D+QPS++  +++I V G+I +D  + PLQF + FQLVA +PGQ+Y+HN +FRLIY
Sbjct:    1 MSATEIGTQFVKFYYDTFDNNRAGLAPLYTANSTLTFETATLQGQAAIIGKFNELPKTQHKTETVDIQPSLNESSILIFVTGKIIID-TNPPLQFTQVFQLVAHSPGQFYVHNDVFRLIY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: CDP13353.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 116.7 bits (291), Expect = 5.000e-23
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:    3 ADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            AD++A AFV HYY T D N +GLG LY+D SMLTFE ++F G++NI  KL GL   +  H +   D QPS   G +++ V G + +DG ++PL+F + F L+ +  G +Y+ N IFRL YA
Sbjct:    4 ADQVAKAFVDHYYSTFDTNRSGLGNLYQDQSMLTFEGEKFQGSSNILAKLTGLPFQQCQHGITTVDCQPSGPAGGMLVFVSGLLVVDGGEHPLKFSQMFHLMPTPQGSFYVLNDIFRLNYA 124
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: POM70391.1 (Nuclear transport factor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 116.3 bits (290), Expect = 6.600e-23
Identity = 59/120 (49.17%), Postives = 78/120 (65.00%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+++A AFVQHYY T D N AGL +LY   S +++E Q   G   I  KL GL  V H     D+QPS     ++I V G+I+++ ++NP+QF + FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEDVAKAFVQHYYTTFDTNRAGLASLYVHVSNMSWEGQMSTGQQAIVAKLQGLPAVRHEYPTVDIQPSTSGNAMIIFVQGKIQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_006848276.1 (nuclear transport factor 2 [Amborella trichopoda] >ERN09857.1 hypothetical protein AMTR_s00013p00078860 [Amborella trichopoda])

HSP 1 Score: 115.9 bits (289), Expect = 8.600e-23
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            M  D +A AFV+HYY T D N AGL +LY+DNSMLTFE Q+  G  NI  KL  L   +  H++   D QPSV P ++++ V G ++L G+ + L+F + F L+ +    YY+ N IFRL YA
Sbjct:    1 MDTDVVARAFVEHYYSTFDTNRAGLASLYQDNSMLTFEGQKVQGAQNIVTKLTSLPFQQCQHSITTIDSQPSVHPNSIIVFVSGNLQLAGEQHALKFSQMFHLLQTPQNSYYVLNDIFRLNYA 123
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_018745446.1 (nuclear transport factor 2 [Fusarium verticillioides 7600] >XP_023432835.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi IMI 58289] >CCT70756.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi IMI 58289] >EWG39255.1 nuclear transport factor 2 [Fusarium verticillioides 7600] >KLO84182.1 putative nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >KLP04016.1 putative nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >KLP12952.1 putative nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >CVL00200.1 probable nuclear transport factor 2 (ntf-2) [Fusarium proliferatum] >CZR42212.1 probable nuclear transport factor 2 (ntf-2) [Fusarium proliferatum ET1] >SCN85129.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCV35304.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCO34653.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCO49138.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCN84414.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCV35830.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCN82434.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi] >SCN67142.1 probable nuclear transport factor 2 (ntf-2) [Fusarium fujikuroi])

HSP 1 Score: 115.5 bits (288), Expect = 1.100e-22
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0 
Query:    4 DEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            +E+A  FV+ YY T D++  GL ALYRD+SMLTFE    +GT  I++KL GL   KV H V   D QPS D G ++IL+ G + +D +  P+ F + FQL     GQY+++N IF+L++
Sbjct:    6 EEVAKQFVEFYYNTFDSDRKGLAALYRDHSMLTFESASVLGTQAITEKLAGLPFEKVKHQVSTLDAQPSNDQGGVIILITGALLVDEEQRPMNFSQSFQLARDANGQYFVYNDIFKLVF 124
The following BLAST results are available for this feature:
BLAST of NO07G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KEQ65704.11.700e-2348.31putative nuclear transport factor NTF-2 [Aureobasi... [more]
KDB12808.12.300e-2346.22nuclear transport factor 2 [Ustilaginoidea virens][more]
PSS30325.12.300e-2345.53Nuclear transport factor 2 like [Actinidia chinens... [more]
XP_018237304.13.000e-2346.22hypothetical protein FOXG_03276 [Fusarium oxysporu... [more]
PNP84860.13.000e-2346.22hypothetical protein FNYG_01954 [Fusarium nygamai][more]
XP_009833748.15.000e-2350.00hypothetical protein H257_09279 [Aphanomyces astac... [more]
CDP13353.15.000e-2346.28unnamed protein product [Coffea canephora][more]
POM70391.16.600e-2349.17Nuclear transport factor [Phytophthora palmivora v... [more]
XP_006848276.18.600e-2345.53nuclear transport factor 2 [Amborella trichopoda] ... [more]
XP_018745446.11.100e-2245.38nuclear transport factor 2 [Fusarium verticillioid... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000682NSK000682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01890.1NO07G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580613gene_2510Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g44gene3361Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01890.1NO07G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01890 ID=NO07G01890|Name=NO07G01890|organism=Nannochloropsis oceanica|type=gene|length=789bp
CCTCGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTC
AGTCGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAAT
GTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTT
TAGACAATAACATCGCAGGACTGGGGGCTCTATATgtacgtcaggcaaca
gggaagggaaaaactattgccagacacatacacatacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacatacatacacacacacacacctctgcgactc
caacccgccaacttccacagCGGGACAACTCAATGCTGACGTTCGAGAGG
CAGCAGTTCATGGGCACCGCCAACATATCGCAAAAGCTGGTCGGCCTGGG
TAAGGTCGTCCATAATGTGCAACATTTCGATGTGCAGCCGTCAGTGGATC
CGGGAAACCTAGTCATTCTTGTGCTTGGTCAAATCAAGCTGGACGGGCAG
GATAACCCCCTTCAGTTTTGCGAGTTCTTCCAGCTTGTTGCCTCCACCCC
TGGGCAGTACTACATTCACAATCAAATTTTCAGGCTTATATACGCATAAC
CGAAAGAATCCTCTGGAGTGTCGTCGTTTGCGCCTATTCCCGGGAGAGAA
AACACGTACTTACAGACGGTAAGGTGAAATCATTTGGCAGTACGTTATGA
GAATATGATGAAAAATAACGAATGGTACCCACATGAAGA
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protein sequence of NO07G01890.1

>NO07G01890.1-protein ID=NO07G01890.1-protein|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQ
KLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQ
LVASTPGQYYIHNQIFRLIYA*
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Synonyms
Publications