NO07G01890, NO07G01890 (gene) Nannochloropsis oceanica

Overview
NameNO07G01890
Unique NameNO07G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr7:558262..559050 +

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Properties
Property NameValue
Descriptionnuclear transport factor 2A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:558262..559050 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
Homology
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: EWM27142.1 (nuclear transport [Nannochloropsis gaditana])

HSP 1 Score: 211.5 bits (537), Expect = 1.500e-51
Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            MSADEIAGAF QHYYGTLD+NIAGLGALYRD SMLTFE QQFMG  NISQK+ GLGK+VHNVQ FDVQPS+DP NL+I V+GQ+KLDGQ+NPL F EFFQLVAS+PGQYYIHNQIFRL YA
Sbjct:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_002183658.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44840.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.0 bits (349), Expect = 9.500e-30
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+EIA AFV H+Y + D N+  L +L++ +SM++FE QQF G  NI  KL G G+V H V+  DVQPS +P  ++I V G IK+ G DNPL FCE FQLV++ PG YY+HN IFRL Y
Sbjct:    1 MSAEEIAQAFVGHFYNSFDTNVDSLASLFQPSSMMSFEGQQFQGPENIINKLKGTGQVQHTVKSTDVQPSSNPNAILIFVTGSIKIGG-DNPLHFCEMFQLVSTAPGAYYVHNDIFRLNY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_002290343.1 (hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335] >EED92095.1 hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 136.7 bits (343), Expect = 4.700e-29
Identity = 66/120 (55.00%), Postives = 82/120 (68.33%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+E+A AFV H+Y   D  + GL  LY  +SMLTFE QQ  G+  I  KL G+G+V H V+  D+QPS DP  +VI V G I++ G DNPL FCEFF LV + PGQYY+HN +FRL Y
Sbjct:    1 MSAEEVAKAFVAHFYQAFDTGVDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVGQVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGG-DNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: GAX24680.1 (hypothetical protein FisN_4Hu238 [Fistulifera solaris])

HSP 1 Score: 129.8 bits (325), Expect = 5.800e-27
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+E+A AFV HYY T D+N   L  L++ NSM+TFE QQF G  +I  KL  +G+V H+V+  DVQPS     ++I V G I++ G DNPL +CE FQLV+++PG +Y+HN IFRL Y
Sbjct:    1 MSAEEVANAFVNHYYNTFDSNPDQLMGLFQPNSMMTFEGQQFQGPQSIVGKLRQIGQVKHDVKSTDVQPSNTESAILIFVTGSIRIGG-DNPLHYCETFQLVSTSPGNFYVHNSIFRLNY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_008908711.1 (hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >ETI42503.1 hypothetical protein F443_12381 [Phytophthora parasitica P1569] >ETK82525.1 hypothetical protein L915_12103 [Phytophthora parasitica] >ETL35909.1 hypothetical protein L916_12028 [Phytophthora parasitica] >ETL89143.1 hypothetical protein L917_11869 [Phytophthora parasitica] >ETM42401.1 hypothetical protein L914_11939 [Phytophthora parasitica] >ETN06209.1 hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >ETO71117.1 hypothetical protein F444_12481 [Phytophthora parasitica P1976] >ETP12211.1 hypothetical protein F441_12367 [Phytophthora parasitica CJ01A1] >ETP40348.1 hypothetical protein F442_12302 [Phytophthora parasitica P10297] >KUF83400.1 Nuclear transport factor 2 [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 7.800e-24
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+E+A AFVQHYY T D N AGL +LY+D S L++E Q   G   I  KL  L  V H     D+QPS     ++I V G+++++ ++NP+QF + FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIMAKLQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_013345986.1 (hypothetical protein AUEXF2481DRAFT_78074 [Aureobasidium subglaciale EXF-2481] >KEQ97267.1 hypothetical protein AUEXF2481DRAFT_78074 [Aureobasidium subglaciale EXF-2481])

HSP 1 Score: 119.4 bits (298), Expect = 7.800e-24
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 0 
Query:    6 IAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            IA  FVQ YY T D N + LGALY+D+SMLTFE     G A I++KLVGL   KV H V   D QPS D G +++LV G++ +D +  P+ + + FQL+    G YY+ N IFRL+YA
Sbjct:    7 IAEQFVQFYYKTFDENRSALGALYKDHSMLTFENSPVQGAAGITEKLVGLPFAKVQHEVASLDAQPSNDAGGILVLVAGRLLVDEEQRPMSYTQSFQLLPDGAGSYYVFNDIFRLVYA 124
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_009530658.1 (hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae] >EGZ13229.1 hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae])

HSP 1 Score: 118.2 bits (295), Expect = 1.700e-23
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+++A AFVQHYY T D N AGL +LY+  S +++E Q   G   I  KL GL  V H     D+QPS     ++I V G+I+++ ++NP+QF + FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEDVAKAFVQHYYTTFDTNRAGLASLYQGVSNMSWEGQMSTGQQAIMAKLQGLPAVRHEFPTVDIQPSTSGNAMIIFVQGKIQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: CCE30050.1 (probable nuclear transport factor 2 (ntf-2) [Claviceps purpurea 20.1])

HSP 1 Score: 118.2 bits (295), Expect = 1.700e-23
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 0 
Query:    2 SADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGL--GKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            S + IA  F+  YY T D +  GL +LYRDNSMLTFE    +GTANI+ KL GL   KV H V   D QPS D G ++ILV GQ+ +D +  P+ F + FQL     GQY+++N +F+L++
Sbjct:    4 SFEAIAKQFIDFYYNTFDTDRKGLASLYRDNSMLTFESTSSLGTANITAKLTGLPFEKVKHQVSTLDAQPSNDNGGIIILVTGQLLVDEEQRPMNFSQAFQLSRDGAGQYFVYNDVFKLVF 124
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_002895567.1 (nuclear transport factor, putative [Phytophthora infestans T30-4] >EEY55858.1 nuclear transport factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 118.2 bits (295), Expect = 1.700e-23
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA+E+A AFVQHYY T D N AGL +LY+D S L++E Q   G   I  K+  L  V H     D+QPS     ++I V G+++++ ++NP+QF + FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIVAKMQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
[Close]
BLAST of NO07G01890 vs. NCBI_GenBank
Match: XP_012200544.1 (hypothetical protein SPRG_20016 [Saprolegnia parasitica CBS 223.65] >KDO28812.1 hypothetical protein SPRG_20016 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.2 bits (295), Expect = 1.700e-23
Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 0 
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIY 121
            MSA +I  AF+ HYY T D N A L +LY D S L+F++  F GT  I +KL  L    H V    +QPSV    ++I+V G++ +DG  NPLQF + FQLVA  PGQ+YIHN  F LIY
Sbjct:    1 MSAQDIGNAFIGHYYTTFDGNRAALASLYSDRSTLSFDKDTFQGTQAILEKLSKLPSTQHRVDTTVIQPSVSDNAILIVVTGKLVIDG-GNPLQFAQTFQLVAHAPGQFYIHNDFFSLIY 119
The following BLAST results are available for this feature:
BLAST of NO07G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27142.11.500e-5182.64nuclear transport [Nannochloropsis gaditana][more]
XP_002183658.19.500e-3055.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002290343.14.700e-2955.00hypothetical protein THAPSDRAFT_22822 [Thalassiosi... [more]
GAX24680.15.800e-2752.50hypothetical protein FisN_4Hu238 [Fistulifera sola... [more]
XP_008908711.17.800e-2450.00hypothetical protein PPTG_13975 [Phytophthora para... [more]
XP_013345986.17.800e-2449.15hypothetical protein AUEXF2481DRAFT_78074 [Aureoba... [more]
XP_009530658.11.700e-2349.17hypothetical protein PHYSODRAFT_286573 [Phytophtho... [more]
CCE30050.11.700e-2347.11probable nuclear transport factor 2 (ntf-2) [Clavi... [more]
XP_002895567.11.700e-2349.17nuclear transport factor, putative [Phytophthora i... [more]
XP_012200544.11.700e-2349.17hypothetical protein SPRG_20016 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000682NSK000682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01890.1NO07G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580613gene_2510Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g44gene3361Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01890.1NO07G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01890 ID=NO07G01890|Name=NO07G01890|organism=Nannochloropsis oceanica|type=gene|length=789bp
CCTCGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTC
AGTCGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAAT
GTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTT
TAGACAATAACATCGCAGGACTGGGGGCTCTATATgtacgtcaggcaaca
gggaagggaaaaactattgccagacacatacacatacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacatacatacacacacacacacctctgcgactc
caacccgccaacttccacagCGGGACAACTCAATGCTGACGTTCGAGAGG
CAGCAGTTCATGGGCACCGCCAACATATCGCAAAAGCTGGTCGGCCTGGG
TAAGGTCGTCCATAATGTGCAACATTTCGATGTGCAGCCGTCAGTGGATC
CGGGAAACCTAGTCATTCTTGTGCTTGGTCAAATCAAGCTGGACGGGCAG
GATAACCCCCTTCAGTTTTGCGAGTTCTTCCAGCTTGTTGCCTCCACCCC
TGGGCAGTACTACATTCACAATCAAATTTTCAGGCTTATATACGCATAAC
CGAAAGAATCCTCTGGAGTGTCGTCGTTTGCGCCTATTCCCGGGAGAGAA
AACACGTACTTACAGACGGTAAGGTGAAATCATTTGGCAGTACGTTATGA
GAATATGATGAAAAATAACGAATGGTACCCACATGAAGA
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protein sequence of NO07G01890.1

>NO07G01890.1-protein ID=NO07G01890.1-protein|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQ
KLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQ
LVASTPGQYYIHNQIFRLIYA*
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Synonyms
Publications