NO07G01870, NO07G01870 (gene) Nannochloropsis oceanica

Overview
NameNO07G01870
Unique NameNO07G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr7:553252..554052 +

Link to JBrowse

Properties
Property NameValue
Descriptionhigh mobility group B1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:553252..554052 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO07G01870 vs. NCBI_GenBank
Match: KFH65517.1 (hypothetical protein MVEG_08994 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-7
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNR--KWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKP 115
            G G  L  I  V S L KL N  + +K LH +++    T  N K  ++ FNGF    DL    +     +  KWTV  L+D   LF LE GGD++ ++  L+ +L KP
Sbjct:   54 GKGVKLSEIPTVNSNLDKLKNTDETIKGLHRVLFGRATTIKNPKANLKEFNGF---ADLTEKEEEHIEEKFGKWTVAGLRDLIELFNLEAGGDKDAVLEHLMVFLKKP 158          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: OAQ22818.1 (hypothetical protein K457DRAFT_279481 [Mortierella elongata AG-77])

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-7
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFP--AGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKP 115
            G G+ LG IA V + L KL +  + +K LH L++       + K  ++AFNGF   +  +   + +++    KWTV  L++   +F LE GGD++ L+ RL+ +L  P
Sbjct:   53 GKGAKLGSIATVNANLDKLKSSDETVKGLHRLLFGRVAPSKSPKNDLKAFNGFEHLSEKEEEALEEKLG---KWTVGGLRELIDVFNLEAGGDKDALLERLMVFLKSP 157          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_001702993.1 (predicted protein [Chlamydomonas reinhardtii] >PNW75115.1 hypothetical protein CHLRE_12g513150v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-7
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNR--KWTVTVLKDAATLFGLEKG----GDRETLIGRLVKYLNKPVTLKE 120
            G G+ LG I  V  ++ KL  D ++L +LH L++K PGT   RKK +  F+GF    D        +  +  K T+ VL     +F L +G    G +E+ I RL+K+L  P  L +
Sbjct:   73 GKGTKLGEIPNVHFLVGKLKTDDEVLTTLHSLLFKRPGTANRRKKNVYEFSGFAFEEDEKDKEHEKAKEKLGKLTIKVLDGILDVFELPRGAGDEGKKESKIERLMKFLESPKQLSD 189          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_002675947.1 (predicted protein [Naegleria gruberi] >EFC43203.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-7
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0
Query:  148 KRTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKAAKLKADAN 209
            KR LSSYML+++  R  +VAE P LKVTE+   +GEKW  +++ EKA Y  KAA+LKA  N
Sbjct:  121 KRPLSSYMLFSQTYRKSLVAENPTLKVTEVAKLVGEKWGKMNDAEKAPYVNKAAELKAAYN 181          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_013417083.1 (protein DEK [Lingula anatina])

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-7
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTAGASSKKKS 133
            G G  LG    ++  L K  ++   LK LH ++Y   G+    KK IR F+GFP  +D      +++   K+ + VLK    +  LEK G ++T++ R++ +L  P   K+ G    A  K+KS
Sbjct:  115 GVGIKLGACVRIEHFLNKTKSEE--LKPLHRILYNRVGSASEIKKNIRQFSGFPFESDSTEFEKKVASLNKYHIPVLKLICEVLDLEKSGAKDTIVTRIMDFLMNP---KDSGRAPPAPKKRKS 233          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_002164643.1 (PREDICTED: protein DEK-like [Hydra vulgaris])

HSP 1 Score: 63.9 bits (154), Expect = 6.700e-7
Identity = 45/122 (36.89%), Postives = 62/122 (50.82%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKL-PNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTAGASSK 130
            G G  LG I YV+ M+ K  P D   LK+LH L+Y  PG     KK IR F G+P        T   S   + ++  LK  + +  LEKGGD+  L  +L+++L KPV   + G T   + K
Sbjct:   99 GKGMKLGDIQYVKYMIDKTRPED---LKTLHKLLYFKPGKNTTLKKEIRTFCGYPFEESSELSTRVSSMMERVSIPELKFISGVLSLEKGGDKGKLKEKLLEFLMKPV---DTGKTIPGTKK 214          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: CRK35341.1 (hypothetical protein BN1708_006693, partial [Verticillium longisporum])

HSP 1 Score: 63.5 bits (153), Expect = 8.700e-7
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 0
Query:  102 TLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKA 201
            T +    K + + + + +  +  GA  KK  R      AKK  +  KR LS+YM +A + R  V AE P +   ++G  +GE+W+GLSE+++A Y AKA
Sbjct:    6 TTLSTFTKPILRTIKMPKAAAKRGAGEKKAKR------AKKDPNAPKRGLSAYMFFANEQRENVRAEHPGISFGQVGRNLGERWKGLSEKQRAPYEAKA 98          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: PSN38807.1 (hypothetical protein C0J52_07906 [Blattella germanica])

HSP 1 Score: 63.5 bits (153), Expect = 8.700e-7
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTAGASSKKKS 133
            G G+ALG I  + +ML K  +D   LK LH +++   G     KK +R FNGF      +    + S  +K  V VLK    +  LEK G+RE +  R+V +L +P   K+ G  A     K+S
Sbjct:  121 GKGTALGDIPRIDAMLQKYKSDE--LKFLHRVLFNRIGKSTMIKKNLRKFNGFDFDKSSDQFEKKKSAVQKLEVRVLKSICGILDLEKKGNREEISERIVNFLMEP---KDSGKPAPTPRPKRS 239          
The following BLAST results are available for this feature:
BLAST of NO07G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
KFH65517.11.800e-736.11hypothetical protein MVEG_08994 [Mortierella verti... [more]
OAQ22818.11.800e-733.33hypothetical protein K457DRAFT_279481 [Mortierella... [more]
XP_001702993.15.100e-734.19predicted protein [Chlamydomonas reinhardtii] >PNW... [more]
XP_002675947.15.100e-754.10predicted protein [Naegleria gruberi] >EFC43203.1 ... [more]
XP_013417083.15.100e-731.45protein DEK [Lingula anatina][more]
XP_002164643.16.700e-736.89PREDICTED: protein DEK-like [Hydra vulgaris][more]
CRK35341.18.700e-735.35hypothetical protein BN1708_006693, partial [Verti... [more]
PSN38807.18.700e-734.68hypothetical protein C0J52_07906 [Blattella german... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01870.1NO07G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628553gene_2508Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01870.1NO07G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01870 ID=NO07G01870|Name=NO07G01870|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGgtgagaaagctgaggggagggagggagaaaggaag
gatgtttggcggatcaggggagggggaaagagcaaaggtggcactcacca
tccatatgtaaacacacgtataacgtctcactcattatcttcgtggaatc
tttctttttcttcttttatttgtctccaacttacagCTGTATGCCAAGGA
CGTCCGTGCTGAGGTGGTAGCAGAGTTCCCCGCTCTCAAAGTCACAGAAA
TTGGGAGTAAGATCGGCGAGAAATGGAGAGGGTTAAGCGAGGAGGAAAAG
GCCAAGTACACGGCCAAGGCCGCAAAGCTAAAGGCGGATGCCAACAAGTA
A
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protein sequence of NO07G01870.1

>NO07G01870.1-protein ID=NO07G01870.1-protein|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MSETQGGGGSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLN
RKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDR
ETLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRT
LSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKA
AKLKADANK*
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Synonyms
Publications