NO07G01870, NO07G01870 (gene) Nannochloropsis oceanica

Overview
NameNO07G01870
Unique NameNO07G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr7:553252..554052 +

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Properties
Property NameValue
Descriptionhigh mobility group B1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:553252..554052 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO07G01870 vs. NCBI_GenBank
Match: CBJ26704.1 (similar to DEK oncogene (DNA binding) [Ectocarpus siliculosus])

HSP 1 Score: 115.2 bits (287), Expect = 2.500e-22
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTA----GASSKKKSRENPAAMAKKGSDGVKRTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKAAK 203
            GSG+ L  I  V   L K+  DHDLLK+ H  +Y   G K  RKK IR+F+GFP     +    +++ ++KWTV  L+D  TL GLEKGGD+  ++ R+V +L  P   +  G  A                              L+ YM++ ++ RA+V+   P LK TE+ +K+G+ W   S+ +K KY  +  K
Sbjct:    5 GSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLNGYMMFTREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIK 202          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: KOO28658.1 (protein dek [Chrysochromulina sp. CCMP291])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 59/200 (29.50%), Postives = 97/200 (48.50%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPA-GTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPV-TLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKAAKLKAD 207
            G+G+ LG I  V+ ++ K P   + LK  H + +  PG +   KK +R F+GF   G +L      +S   K    ++K    L      G +   +  LV +L +P  + K+  +      + +S +       K  D +KR  S Y+LY  + R +V  E P    T++   + EKW+G+S+E + KY A+AA LKA+
Sbjct:   43 GAGTKLGDIENVKILIDKHPASSEELKKFHAVCFGRPGKQTEVKKNLREFSGFTLDGAELEKKKASVS---KLDGKMIKTLLALCDQPTSGTKAENVEALVAFLQEPAESGKKSLALKSGEKRARSEKKXXXXXXKAKDELKRPPSGYLLYCNNKREKVKQENPDASATDMMKILAEKWKGISDERRQKYEAEAAALKAE 239          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_014161108.1 (hypothetical protein SARC_00683 [Sphaeroforma arctica JP610] >KNC87206.1 hypothetical protein SARC_00683 [Sphaeroforma arctica JP610])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGN-RKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKAAKLKA 206
            G G+ LG I+ ++  L K   D   L  LH L + + G++L  +K +R F GF   ++   + D+   +  K  +  L+    +  +   GD+ETL+  ++ +LN P   + V                               S+Y L+ K  R + V +FP +K TEI SK+ E W+  S+EEKAKYT  A   KA
Sbjct:  143 GKGTPLGQISMIEEKLKKHKTDD--LHDLHRLCFGSKGSRLEVRKNLRLFKGFDYDSN-PAIKDKTQNSLEKRHMPALRTMCDVICISHSGDKETLMDNIMDFLNSPNESECVAEKKXXXXXXXXXXXXXXXXXXXXXXXXXAPSAYNLFIKHNRQKAVTKFPDVKNTEIMSKMSEMWKECSKEEKAKYTKMAEDAKA 337          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_002947942.1 (hypothetical protein VOLCADRAFT_120551 [Volvox carteri f. nagariensis] >EFJ50930.1 hypothetical protein VOLCADRAFT_120551 [Volvox carteri f. nagariensis])

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-10
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTD-----LNGVTDRISGNRKWTVTVLKDAATLFGLEKG----GDRETLIGRLVKYLNKPVTLKEVGSTAGASSKK 131
            G G+ LG I  V  +L KL  D +L+ SLH L++K PGT   RKK +  F+G     D     L  + +R+    KWT+ +L  A  +F L +G    G +E  + RL+K+L +P  L E    A A  KK
Sbjct:   69 GKGTKLGDIPNVHYLLGKLKTDDELVTSLHNLLFKRPGTSHRRKKNLYEFSGLSFDDDEKEKELEKLQERLG---KWTIPLLNGALDVFELPRGNGDEGKKEAKVERLLKFLEEPKKLSEKDLAAEALKKK 196          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: KRT86183.1 (hypothetical protein AMK59_1579, partial [Oryctes borbonicus])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTAGASSKKKS 133
            G G ALG I  + + +++  ND   LK LH L+YKTPG     KK I+ FNGF    D +    ++S  +K+ V  LK    +  LEK G++E +  R+V++L +P   K+ G   G    K++
Sbjct:  156 GRGLALGDIPRIDASISRFKNDD--LKLLHRLLYKTPGKTTMIKKNIKKFNGFDFAKDSDEYGKKLSSVQKFEVKQLKSVCEMLDLEKKGNKEEIGERIVEFLIEP---KDSGKPVGGGRPKRT 274          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: PNH05207.1 (Protein DEK [Tetrabaena socialis])

HSP 1 Score: 72.0 bits (175), Expect = 2.500e-9
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNG--FPAG---TDLNGVTDRISGNRKWTVTVLKDAATLFGLEKG-GD---RETLIGRLVKYLNKPVTL--KEVGSTA 125
            G G+ LG I  V   L KL  D +LL  LH +++K PGT   RKK +  F+G  F  G    +L  VTDR+    KWT+ +L  A  +F L +G GD   +E+ I RL ++L  P  L  K++ +TA
Sbjct:  100 GKGTKLGEIPNVHFQLGKLKTDDELLSGLHNVLFKRPGTANRRKKNLYEFSGLTFDDGEKEKELEKVTDRLG---KWTIALLNSALDVFELPRGTGDESKKESKIERLAQFLEAPSKLSDKDLAATA 223          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: KXZ47395.1 (hypothetical protein GPECTOR_35g833 [Gonium pectorale])

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-9
Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNG--FPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKG----GDRETLIGRLVKYLNKPVTLKE 120
            G G+ LG I  V  +L KL  D +LL  LH L++K PGT + R+K +  F+G  F  G     +        KWT+ +L  A  +F L +G    G +E  + RL+K+L +P  + +
Sbjct:   66 GKGNKLGEIPNVHFLLGKLKTDDELLTGLHSLLFKRPGTTMRRRKNLYEFSGLTFEEGDQAKEMEKLSEKLGKWTIGLLNSALDVFELPRGQGDEGKKEAKVERLLKFLEEPKRMSD 182          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_010883560.1 (PREDICTED: protein DEK isoform X1 [Esox lucius])

HSP 1 Score: 67.0 bits (162), Expect = 7.900e-8
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKP 115
            GSG  LG IA V   L KL      LK LH++++  PG     +K +R FNGFP   D +    +     K T   L+   T+  LEKGG++  LI R++ +L  P
Sbjct:   94 GSGDKLGDIARVNHQLGKLKVPD--LKPLHIILFDMPGKIATMRKNMRLFNGFPFEVDSDPYLKKKERMMKLTCAKLRTICTVLDLEKGGNQSVLIDRIIHFLMSP 197          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_010883561.1 (PREDICTED: protein DEK isoform X2 [Esox lucius] >XP_010883562.1 PREDICTED: protein DEK isoform X2 [Esox lucius])

HSP 1 Score: 67.0 bits (162), Expect = 7.900e-8
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 0
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKP 115
            GSG  LG IA V   L KL      LK LH++++  PG     +K +R FNGFP   D +    +     K T   L+   T+  LEKGG++  LI R++ +L  P
Sbjct:   88 GSGDKLGDIARVNHQLGKLKVPD--LKPLHIILFDMPGKIATMRKNMRLFNGFPFEVDSDPYLKKKERMMKLTCAKLRTICTVLDLEKGGNQSVLIDRIIHFLMSP 191          
BLAST of NO07G01870 vs. NCBI_GenBank
Match: XP_015805042.1 (PREDICTED: protein DEK [Nothobranchius furzeri] >XP_015805043.1 PREDICTED: protein DEK [Nothobranchius furzeri] >XP_015805044.1 PREDICTED: protein DEK [Nothobranchius furzeri] >XP_015805046.1 PREDICTED: protein DEK [Nothobranchius furzeri])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 41/111 (36.94%), Postives = 55/111 (49.55%), Query Frame = 0
Query:    7 GGGSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTD---LNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKP 115
            G GSG  LG I      +T++      LK LHML++  PG     KK +R FNGFP   D    N   +++  N  +T T LK   T+  LEK G    LI R++ +L  P
Sbjct:   73 GDGSGDKLGDIPRTNHQITRMKLVD--LKQLHMLLFDRPGKMATLKKNLRLFNGFPFDVDSEQYNKKREKLLKNSSFTNTKLKVVCTVLDLEKKGTHSDLIDRILTFLISP 181          
The following BLAST results are available for this feature:
BLAST of NO07G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
CBJ26704.12.500e-2233.84similar to DEK oncogene (DNA binding) [Ectocarpus ... [more]
KOO28658.13.700e-1329.50protein dek [Chrysochromulina sp. CCMP291][more]
XP_014161108.12.000e-1129.29hypothetical protein SARC_00683 [Sphaeroforma arct... [more]
XP_002947942.13.800e-1036.64hypothetical protein VOLCADRAFT_120551 [Volvox car... [more]
KRT86183.11.100e-935.48hypothetical protein AMK59_1579, partial [Oryctes ... [more]
PNH05207.12.500e-939.37Protein DEK [Tetrabaena socialis][more]
KXZ47395.15.500e-934.19hypothetical protein GPECTOR_35g833 [Gonium pector... [more]
XP_010883560.17.900e-836.79PREDICTED: protein DEK isoform X1 [Esox lucius][more]
XP_010883561.17.900e-836.79PREDICTED: protein DEK isoform X2 [Esox lucius] >X... [more]
XP_015805042.11.000e-736.94PREDICTED: protein DEK [Nothobranchius furzeri] >X... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01870.1NO07G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628553gene_2508Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01870.1NO07G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01870 ID=NO07G01870|Name=NO07G01870|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGgtgagaaagctgaggggagggagggagaaaggaag
gatgtttggcggatcaggggagggggaaagagcaaaggtggcactcacca
tccatatgtaaacacacgtataacgtctcactcattatcttcgtggaatc
tttctttttcttcttttatttgtctccaacttacagCTGTATGCCAAGGA
CGTCCGTGCTGAGGTGGTAGCAGAGTTCCCCGCTCTCAAAGTCACAGAAA
TTGGGAGTAAGATCGGCGAGAAATGGAGAGGGTTAAGCGAGGAGGAAAAG
GCCAAGTACACGGCCAAGGCCGCAAAGCTAAAGGCGGATGCCAACAAGTA
A
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protein sequence of NO07G01870.1

>NO07G01870.1-protein ID=NO07G01870.1-protein|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MSETQGGGGSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLN
RKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDR
ETLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRT
LSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKA
AKLKADANK*
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Synonyms
Publications