NO07G01730, NO07G01730 (gene) Nannochloropsis oceanica

Overview
NameNO07G01730
Unique NameNO07G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1067
Alignment locationchr7:521068..522134 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:521068..522134 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G01730 vs. NCBI_GenBank
Match: EWM21429.1 (hypothetical protein Naga_100147g10 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 3.800e-22
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 0 
Query:    6 LPALLVLALCATNAAAAGYIKTFNASNYALTTYDAAAEKPLRVRPNTVYTIDKFLD-EDFHLV-IQCPQPKNNRMRKKGFITYLSYYQGIDESAVEVYEDGSDI--AQAEMYSIID-AGYGSLLVLFCNNGKLTLNYNY 140
            L  LL+L LC T  AA GY++T +A+ Y    ++A+   PLRV+P  VY      D +D H V IQCPQPK  + +KKGF+TYLSY     ++ V VY+ G D    Q  MYS  D  GYGSLL LFC+NG LT+ +NY
Sbjct:   65 LATLLLLGLCTTQVAARGYMRTMDAAAYVRDDFNASVAMPLRVKPGRVYEFSTPADTDDDHFVNIQCPQPK--KTQKKGFLTYLSYVNSFPDTPVYVYQLGDDYNDNQGAMYSARDEPGYGSLLPLFCSNGVLTVAFNY 201
The following BLAST results are available for this feature:
BLAST of NO07G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21429.13.800e-2248.20hypothetical protein Naga_100147g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01730.1NO07G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01730.1NO07G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01730 ID=NO07G01730|Name=NO07G01730|organism=Nannochloropsis oceanica|type=gene|length=1067bp
GTTTCTAAAAAAACTGTCGTGTGCTTTTCGTTTGGTTATTTGGTTCCCTG
TCAATCTGATAGCAAATTGGTTGCCTCTTTTGGTTATATTCCCTTTGAAC
ACCACACAGACACAGTCTCACAGACACAGGTGTCAAAGACACCCCCGGAC
ACTCACTGGGTGGCCAGATCCATCGATACTCACACACATCCACGCCCATA
CGGATGTTCCGCATGATCTTTCCCCTCCCCCCTAATCCATCCGCCTTCAC
ACAATCACTATCTATGCTATTATCTCTCCTCCTTCACATCACACGTATTT
CGTACAGAGGCAACACACAACCAAGTCAGCAATGTTCATCAAGAAGCTGC
CTGCGCTCCTTGTGCTTGCTTTATGCGCCACCAATGCCGCTGCCGCCGGT
TACATCAAGACGTTTAACGCCTCCAACTACGCCCTGACAACATATGATGC
CGCCGCTGAAAAGCCCCTCCGGGTGAGGCCCAACACCGTGTACACGATCG
ACAAGTTCCTCGACGAAGACTTCCACCTCGTTATTCAGTGTCCTCAGCCC
AAGAATAACCGCATGAGGAAGAAGGGTTTCATCACCTATTTGAGCTATTA
CCAAGGCATTGACGAAAGTGCCGTCGAGGTCTATGAGGACGGCAGCGACA
TCGCACAAGCTGAGATGTATAGCATCATTGATGCTGGGTACGGGTCTTTG
CTTGTACTGTTCTGCAACAATGGCAAGCTTACCTTGAACTACAACTATGC
CGCCTAATGAGAGAACGGGATGCTGAATAATATAATTGAATCAACGGACC
AGCTTCTCATTCCAATCTCCATGTTTTTGCTGTTATGTGTCGTGTTGTGT
TGCGGGGATGTGAGTGTCTTATGTGTCGTGTTGTGTTGCGGGGATGTGTG
TGTCTCTCGCGGCGTCCTGTTAATTCTATTTCTGCGCGGGAATGTGAGCA
TATAATTCAGGGACCGGTGAGAGCCCGGCAACCCCATCAGAAGCCTTGAT
GGATGAACAATCAGATTGTAACGAGTGGCGAAGTTGTGAAAGAATTAAAA
AGAAGGTGCCGAAGATG
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protein sequence of NO07G01730.1

>NO07G01730.1-protein ID=NO07G01730.1-protein|Name=NO07G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFIKKLPALLVLALCATNAAAAGYIKTFNASNYALTTYDAAAEKPLRVRP
NTVYTIDKFLDEDFHLVIQCPQPKNNRMRKKGFITYLSYYQGIDESAVEV
YEDGSDIAQAEMYSIIDAGYGSLLVLFCNNGKLTLNYNYAA*
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Synonyms
Publications