NO07G01650, NO07G01650 (gene) Nannochloropsis oceanica

Overview
NameNO07G01650
Unique NameNO07G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1514
Alignment locationchr7:501884..503397 +

Link to JBrowse

Properties
Property NameValue
DescriptionThioredoxin m
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:501884..503397 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: PNH02406.1 (Thioredoxin-like protein CITRX, chloroplastic [Tetrabaena socialis])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0 
Query:   36 HRHSRPRGGPVMMAGDSGVL-----KVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFI--REGQLVHRMEGAMPASELTKMV 154
            H  S  RG     A  S V      K+T EELE A+A   + +++D +A WCGPC +LA EL+KV      K++V+K+D DE P +A+ LK+ GLPTI FI    G+   R EG +PA+++ ++V
Sbjct:   40 HARSTARGSQGSAARRSVVARGMVEKITSEELEVAIATRETTIIVDFFATWCGPCLLLAKELEKVAETMDGKVKVVKIDVDENPDLANMLKIQGLPTIVFIPKENGKPALRTEGWLPAAQIMEIV 164
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_035151315.1 (thioredoxin [Calothrix sp. 336/3] >AKG21057.1 thioredoxin [Calothrix sp. 336/3])

HSP 1 Score: 95.1 bits (235), Expect = 2.300e-16
Identity = 36/97 (37.11%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:   60 EELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHY 157
            +  E+ L++   PVL+D YA WCGPCQ++A EL+      + ++RV+K+D+++ P IA+  ++  LPT+   ++G+ VHR+EGA+ A++L + + ++
Sbjct:    8 DSFEEMLSDADLPVLVDFYADWCGPCQMMAKELEMANAQLQGQIRVVKIDTEKYPQIATQYRIEALPTLVLFKKGEAVHRIEGALRANDLVRTIQNF 104
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_015186722.1 (MULTISPECIES: thioredoxin [Chroococcaceae] >AFZ28845.1 thioredoxin [Gloeocapsa sp. PCC 7428] >OKH25737.1 thioredoxin [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 94.7 bits (234), Expect = 3.000e-16
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:   66 LAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASEL 150
            LA+   PVL+D YA WCGPCQ++A  L++V   ++ +LRV+K+D+++ P IAS  +V  LPT+ F + GQ V R+EG MPA  L
Sbjct:   14 LAQSNVPVLVDFYADWCGPCQMMAAILERVNAQFQQQLRVVKIDTEKYPEIASQYQVQALPTLVFFKHGQPVERIEGVMPADAL 97
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_023074805.1 (thioredoxin [Leptolyngbya sp. Heron Island J] >ESA34384.1 thioredoxin [Leptolyngbya sp. Heron Island J])

HSP 1 Score: 94.7 bits (234), Expect = 3.000e-16
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 
Query:   63 EKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASEL 150
            E  LA    P L+D YA WCGPCQ++AGEL KVK   +DKL+++K+D+D    +AS  +++ LPT+   ++GQ + R+EGAM A +L
Sbjct:   11 EDMLAGADKPTLVDFYATWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYNTLASKHQIHALPTMVLFKDGQEIDRIEGAMTAPQL 97
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: CDN15181.1 (Thioredoxin [Richelia intracellularis])

HSP 1 Score: 94.7 bits (234), Expect = 3.000e-16
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0 
Query:   63 EKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHY 157
            E+ L+    PVL+D YA WCGPCQ++A EL+ V    + KL+++K+D+++ P +AS  +VY LPT+   + GQ V R+EGA+ A E+   +  Y
Sbjct:   11 EEMLSSSDLPVLVDFYADWCGPCQLMARELEMVNAELQGKLQIIKIDTEKYPELASQYQVYALPTLVLFKNGQPVERIEGALKAKEVVGKIQTY 104
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_027071290.1 (thioredoxin [Luteimonas sp. J29])

HSP 1 Score: 94.4 bits (233), Expect = 3.900e-16
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 0 
Query:   51 DSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHYCFGAPLDGATAAADEE 173
            D+       E L K+L EV  PVL+D +A+WCGPC+ L   L+K+ G Y     + KVD++ EP IA+A ++  +PT+F ++ GQLV   +GA+P  +L + + H+    P +G   AA+ E
Sbjct:   11 DATTASFEAEVLRKSL-EV--PVLVDFWAEWCGPCRTLGPILEKLAGQYNGAFLLAKVDTEREPQIAAAFQIRSIPTVFLVKGGQLVDGFQGALPEGQLREFLRHHGI-EPAEGGGDAAEAE 128
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_055076595.1 (thioredoxin [Pseudanabaena sp. 'Roaring Creek'])

HSP 1 Score: 94.4 bits (233), Expect = 3.900e-16
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 0 
Query:   63 EKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHY 157
            ++ L    +P+L+D YA WCGPCQ++ G LD+V    KDK++++K+++D  P +AS  +V+ LPT+   ++G+ V R+EG + A  L   + HY
Sbjct:   11 DELLKSSEAPILVDFYAPWCGPCQLMTGILDRVSETMKDKVQIVKINTDNYPDLASQYRVFALPTLVLFKDGEPVDRVEGVIQADPLCDRIEHY 104
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: OGN75794.1 (thioredoxin [Chloroflexi bacterium GWB2_54_36])

HSP 1 Score: 94.4 bits (233), Expect = 3.900e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   57 VTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHY 157
            VT  E EK + +   PV++D +A WCGPC+++A  LDK+   Y  KL + KVD+DE P   +   V G+PT+ F+  G+LVHR  GA+P   L  +V  +
Sbjct:    8 VTDAEFEKTVLQSTLPVIVDFWAPWCGPCRMVAPTLDKLAAEYAGKLLIAKVDTDENPDWPTRFGVQGIPTMLFVSNGKLVHRQVGALPEGILRDLVKEF 107
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_099699474.1 (thioredoxin [Chroococcales cyanobacterium IPPAS B-1203] >PIG95210.1 thioredoxin [Chroococcales cyanobacterium IPPAS B-1203])

HSP 1 Score: 94.4 bits (233), Expect = 3.900e-16
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 0 
Query:   60 EELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASEL 150
            +  E+ LA+   PVL+D YA WCGPCQ++A  L++V   ++ +LRV+K+D+++ P IAS  +V  LPT+   + GQ V R+EG MPA  L
Sbjct:    8 KNFEELLAQSNVPVLVDFYADWCGPCQMMAAILERVNAQFQQQLRVVKIDTEKYPEIASQHQVQALPTLVLFKHGQPVERIEGVMPADAL 97
[Close]
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_013165144.1 (thioredoxin [Starkeya novella] >ADH87639.1 thioredoxin [Starkeya novella DSM 506])

HSP 1 Score: 94.0 bits (232), Expect = 5.100e-16
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:   53 GVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVN 155
            GV KV+ +  E  + +   PVL+D +A+WCGPC+++A  LD+V G   DKL+++K++ DE PA AS   +  +PT+   ++GQL  R  GA P +++ + +N
Sbjct:    2 GVEKVSDQSFESDVIKSDGPVLVDFWAEWCGPCRMVAPVLDEVAGELGDKLKIVKLNVDENPATASKYGIMSIPTLLLFKDGQLASRQVGAAPKAKMLQWIN 103
The following BLAST results are available for this feature:
BLAST of NO07G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PNH02406.11.300e-1641.60Thioredoxin-like protein CITRX, chloroplastic [Tet... [more]
WP_035151315.12.300e-1637.11thioredoxin [Calothrix sp. 336/3] >AKG21057.1 thio... [more]
WP_015186722.13.000e-1648.81MULTISPECIES: thioredoxin [Chroococcaceae] >AFZ288... [more]
WP_023074805.13.000e-1647.13thioredoxin [Leptolyngbya sp. Heron Island J] >ESA... [more]
CDN15181.13.000e-1642.55Thioredoxin [Richelia intracellularis][more]
WP_027071290.13.900e-1638.52thioredoxin [Luteimonas sp. J29][more]
WP_055076595.13.900e-1639.36thioredoxin [Pseudanabaena sp. 'Roaring Creek'][more]
OGN75794.13.900e-1642.00thioredoxin [Chloroflexi bacterium GWB2_54_36][more]
WP_099699474.13.900e-1645.56thioredoxin [Chroococcales cyanobacterium IPPAS B-... [more]
WP_013165144.15.100e-1639.22thioredoxin [Starkeya novella] >ADH87639.1 thiored... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000704NSK000704Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01650.1NO07G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580540gene_2488Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g21gene3342Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01650.1NO07G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01650 ID=NO07G01650|Name=NO07G01650|organism=Nannochloropsis oceanica|type=gene|length=1514bp
TCCCAACATCTCCAGGCACCTGTTTTGTGGTGAATGGATGAGGCGCATGC
GTCAGATGCCGAAGTAATCAAGGGATGGGGGACCTGTGGTGGGGGAGGAG
AGAAGGAAAAGAGATGGGACACCGGCAATGCTTTCATCAGACATTACCTT
CTTATCGAGCACGCACAAAGCAAGGTGCGGGCAACGTCCACCTCGCCCAT
CAAGTCTTTCTCCCACTGTTGCTCACTCAAGCGAACACGCACAGGTCTCC
CTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGCCACCATGATG
CAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGTGGCCGC
CTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGCGAGgta
tgtggagcggtgatgtgcagacggagcgaacgggatatcggtagagatgg
aatgcgaggcagagagagcactgcatttgattcagagagagcacagcatt
tgattctacctacccacccttcgctcttactcatttccacattcctacat
cccaaaacacagTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATG
ATGGCTGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAA
AGCCCTGGCGGAGGTGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGT
GGTGCGGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGG
CTGTACAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCC
TGCGATTGCCTCTGCGCTCAAGGTGTATGGgtaagaaaggataaggatat
cctctcacttacccttccttccttgtttcctccttcctctcctcctcacc
taatttatcctccctaacctccatacccctttttcccgtttccatccaaa
agCCTTCCCACAATATTCTTCATCCGCGAGGGACAGTTGGTCCATCGTAT
GGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATGGTGAATCATTATT
GCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGCGGATGAGGAAATC
AAGGATGTTTGAGAAAGGAGGGGAAGAGGGGAAAGGCCGAAAGAAGGTAC
CGAAAGATGCCATGCATGCACGGACGCAAGTAAGCAAGAAATAGATTTAT
CGAGCAGAGAAGGAGGCAGAAGAGGAATGAGCAAAGGTCTGCGACGTTAC
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTTGCTGTTGTGGTGATGG
AAGGATGCATGTTGTGTCGTTGTATATATTGAAGGGAGGGTGCCCTAGGG
GGGTAAGGGGGTAAGAGTGGATTGTTCGAGTACCTTTTATTTGTCATGCC
TCTGTTGCAGATGGTGCGATGGTGACGTGGAGACGCGTCTGGACACGAGG
AAAGGGGATCGTTAAGACAAGGAGAAGAAAAGTGGCACACCAAATGATGG
ATGAACGCTTGGCC
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protein sequence of NO07G01650.1

>NO07G01650.1-protein ID=NO07G01650.1-protein|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MMQLKNKQALGVCLLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAG
DSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYK
DKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELT
KMVNHYCFGAPLDGATAAADEEIKDV*
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Synonyms
Publications