NO07G01650, NO07G01650 (gene) Nannochloropsis oceanica

Overview
NameNO07G01650
Unique NameNO07G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1514
Alignment locationchr7:501884..503397 +

Link to JBrowse

Properties
Property NameValue
DescriptionThioredoxin m
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:501884..503397 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO07G01650 vs. NCBI_GenBank
Match: EWM27147.1 (thioredoxin m [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.600e-65
Identity = 133/176 (75.57%), Postives = 149/176 (84.66%), Query Frame = 0
Query:    2 MQLKNKQALGVC-LLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAGDSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHYCFGAPLDGATAAADEEIKDV 177
            + L  KQ L V  LL++ AL QAF+P ++S ++ V   S P+G P+MMAG+SGVLKV+GEELEK LAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEP IASALKVYGLPTIFFIREGQL+HR+EGAMPASELTK+VNHYCFGAP        +EEIKDV
Sbjct:    6 LPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAP--------EEEIKDV 173          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: CBJ32678.1 (thioredoxin-related protein [Ectocarpus siliculosus])

HSP 1 Score: 119.4 bits (298), Expect = 1.100e-23
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 0
Query:   57 VTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHYCFGAPLDGATAAADE 172
            VTGEELE  L E   P++LDV+A WCGPC  L  E++K+    + K RVLK+DSDEE  +A AL +YGLPT+ ++++G++ HR EG +PA E+ ++ + + FG P    T  AD+
Sbjct:   75 VTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMKDGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTDPADD 189          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: XP_005770861.1 (hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516] >EOD18432.1 hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 110.9 bits (276), Expect = 4.000e-21
Identity = 60/145 (41.38%), Postives = 88/145 (60.69%), Query Frame = 0
Query:   12 VCLLLVAALAQAF--MPATLSGMQRVHRHSRPRGGPVMMAGDSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVN 155
            +C L++AA       +  T +G QR+      R   + M     V +VT EE E  L +  +P+LLDV+A WCGPCQ++A E+DKV   Y D+ RVLK+D+D+E  +A  L+V GLPT+  I +  +V R EGA+ A EL ++V+
Sbjct:    4 LCWLVLAACITPLHALALTAAGGQRLALRPSSRSPALAM---GAVRQVTTEEFEAELQDCATPILLDVFAVWCGPCQLMAPEMDKVAEHYGDRCRVLKIDADDEAEVADTLQVRGLPTVLLINDMSVVMRAEGALMADELKEIVD 145          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: OSX76447.1 (hypothetical protein BU14_0190s0004 [Porphyra umbilicalis])

HSP 1 Score: 109.4 bits (272), Expect = 1.200e-20
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   52 SGVLKVTGEELEKALA-EVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHYCFGAP 162
            S V +V  + LE AL  +  +P+L+D YA WCGPCQ L   LD++   Y+ +LR+LKVD++ EP +ASAL + GLPT+ F+R+G L +RMEGA+ A EL  +++     AP
Sbjct:   97 SAVTQVDHDGLEAALKNDSTTPLLVDFYAPWCGPCQFLLPVLDELATRYEGRLRILKVDTESEPELASALAIRGLPTLCFVRDGALKYRMEGALAADELASIIDQILLDAP 207          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: GAX86360.1 (hypothetical protein CEUSTIGMA_g13772.t1 [Chlamydomonas eustigma])

HSP 1 Score: 101.7 bits (252), Expect = 2.400e-18
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   54 VLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFI--REGQLVHRMEGAMPASELTKMV 154
            V K+TGE+LEK +A+    +++D +A WCGPC +LA EL+KV     DK++VLK+D DE P ++S LK+ GLPTI FI    G+   R EG +PA ++  +V
Sbjct:   42 VEKITGEQLEKEIADRDRTLIVDFFATWCGPCLLLANELEKVAESLGDKVKVLKIDVDENPELSSQLKIEGLPTIVFIPKESGKPALRTEGLLPAQQIMDIV 143          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: GAX77391.1 (hypothetical protein CEUSTIGMA_g4837.t1 [Chlamydomonas eustigma])

HSP 1 Score: 101.7 bits (252), Expect = 2.400e-18
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   54 VLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFI--REGQLVHRMEGAMPASELTKMV 154
            V K+TGE+LEK +A+    +++D +A WCGPC +LA EL+KV     DK++VLK+D DE P ++S LK+ GLPTI FI    G+   R EG +PA ++  +V
Sbjct:   42 VEKITGEQLEKEIADRDRTLIVDFFATWCGPCLLLASELEKVAESLGDKVKVLKIDVDENPELSSQLKIEGLPTIVFIPKESGKPALRTEGLLPAQQIMDIV 143          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: OGO11105.1 (thioredoxin [Chloroflexi bacterium RBG_16_47_49])

HSP 1 Score: 97.1 bits (240), Expect = 6.000e-17
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 0
Query:   55 LKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHY 157
            + VT    EKA+ +   PV++D +A WCGPC+++A  LDK+   +  KL V KV++DE P  AS  +V G+PT+FF+ +G++VHR  GA+P   L ++V  +
Sbjct:    6 IHVTDSAFEKAVLQSKIPVIVDFWAPWCGPCRMVAPTLDKLAKEHAGKLLVAKVNTDENPEWASRYQVQGIPTMFFVADGKIVHRQVGALPEPMLREVVKEF 107          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: XP_005838337.1 (thioredoxin y [Guillardia theta CCMP2712] >EKX51357.1 thioredoxin y [Guillardia theta CCMP2712])

HSP 1 Score: 96.7 bits (239), Expect = 7.800e-17
Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 0
Query:   19 ALAQAFMPATLSGMQRVHRHSRPRGGPVMMAGDSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMV 154
            AL     P+T  G  R+      R   + MAG   V  V  E  E  + E   P+++D YA+WCGPC+++A +L++V    KD++R LK+++DE   +A+ ++VY LPT+  I++G +V R EGAM A+++  +V
Sbjct:   45 ALCAGLSPST--GRGRIQNQGNVR-TTLRMAG--AVEAVDAETFEVIIQEETKPLVVDFYAEWCGPCRLVAPQLEEVAQTMKDQVRFLKINTDENERLATLMQVYALPTLLLIKDGAVVQRAEGAMMANQIRDLV 174          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: WP_006517946.1 (thioredoxin [Leptolyngbya sp. PCC 7375] >EKV03585.1 thioredoxin [Leptolyngbya sp. PCC 7375])

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   63 EKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASEL 150
            E  LA    P L+D YA WCGPCQ++AGEL KVK   +DKL+++K+D+D    +AS  +++ LPT+   ++GQ V R+EGAM A++L
Sbjct:   11 EDMLAGSDKPTLVDFYANWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYDTLASKYQIHALPTMVLFKDGQEVDRIEGAMNATQL 97          
BLAST of NO07G01650 vs. NCBI_GenBank
Match: ABR23155.1 (thioredoxin [Ulva fasciata])

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0
Query:   35 VHRHSRPRGGPVMMAGDSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFI--REGQLVHRMEGAMPASELTKMV 154
            V RH+ P       A    + KVTGEELE ALA    P+++D YA WCGPC +LA EL++V     D +++LKVD++ E A+AS L++ GLPT+ FI     +   R EG +PA+ +  +V
Sbjct:   16 VPRHAAPLQRRNCTAYAGEIRKVTGEELEVALANREKPMIVDFYADWCGPCVLLAKELEQVAQELGDSVQILKVDTEIEKALASQLRIQGLPTMIFIGMDPEKPALRTEGLLPANSIKDIV 136          
The following BLAST results are available for this feature:
BLAST of NO07G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27147.11.600e-6575.57thioredoxin m [Nannochloropsis gaditana][more]
CBJ32678.11.100e-2346.96thioredoxin-related protein [Ectocarpus siliculosu... [more]
XP_005770861.14.000e-2141.38hypothetical protein EMIHUDRAFT_61580, partial [Em... [more]
OSX76447.11.200e-2046.85hypothetical protein BU14_0190s0004 [Porphyra umbi... [more]
GAX86360.12.400e-1847.06hypothetical protein CEUSTIGMA_g13772.t1 [Chlamydo... [more]
GAX77391.12.400e-1847.06hypothetical protein CEUSTIGMA_g4837.t1 [Chlamydom... [more]
OGO11105.16.000e-1742.16thioredoxin [Chloroflexi bacterium RBG_16_47_49][more]
XP_005838337.17.800e-1737.04thioredoxin y [Guillardia theta CCMP2712] >EKX5135... [more]
WP_006517946.11.000e-1648.28thioredoxin [Leptolyngbya sp. PCC 7375] >EKV03585.... [more]
ABR23155.11.000e-1642.98thioredoxin [Ulva fasciata][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000704NSK000704Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01650.1NO07G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580540gene_2488Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g21gene3342Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01650.1NO07G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01650 ID=NO07G01650|Name=NO07G01650|organism=Nannochloropsis oceanica|type=gene|length=1514bp
TCCCAACATCTCCAGGCACCTGTTTTGTGGTGAATGGATGAGGCGCATGC
GTCAGATGCCGAAGTAATCAAGGGATGGGGGACCTGTGGTGGGGGAGGAG
AGAAGGAAAAGAGATGGGACACCGGCAATGCTTTCATCAGACATTACCTT
CTTATCGAGCACGCACAAAGCAAGGTGCGGGCAACGTCCACCTCGCCCAT
CAAGTCTTTCTCCCACTGTTGCTCACTCAAGCGAACACGCACAGGTCTCC
CTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGCCACCATGATG
CAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGTGGCCGC
CTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGCGAGgta
tgtggagcggtgatgtgcagacggagcgaacgggatatcggtagagatgg
aatgcgaggcagagagagcactgcatttgattcagagagagcacagcatt
tgattctacctacccacccttcgctcttactcatttccacattcctacat
cccaaaacacagTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATG
ATGGCTGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAA
AGCCCTGGCGGAGGTGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGT
GGTGCGGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGG
CTGTACAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCC
TGCGATTGCCTCTGCGCTCAAGGTGTATGGgtaagaaaggataaggatat
cctctcacttacccttccttccttgtttcctccttcctctcctcctcacc
taatttatcctccctaacctccatacccctttttcccgtttccatccaaa
agCCTTCCCACAATATTCTTCATCCGCGAGGGACAGTTGGTCCATCGTAT
GGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATGGTGAATCATTATT
GCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGCGGATGAGGAAATC
AAGGATGTTTGAGAAAGGAGGGGAAGAGGGGAAAGGCCGAAAGAAGGTAC
CGAAAGATGCCATGCATGCACGGACGCAAGTAAGCAAGAAATAGATTTAT
CGAGCAGAGAAGGAGGCAGAAGAGGAATGAGCAAAGGTCTGCGACGTTAC
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTTGCTGTTGTGGTGATGG
AAGGATGCATGTTGTGTCGTTGTATATATTGAAGGGAGGGTGCCCTAGGG
GGGTAAGGGGGTAAGAGTGGATTGTTCGAGTACCTTTTATTTGTCATGCC
TCTGTTGCAGATGGTGCGATGGTGACGTGGAGACGCGTCTGGACACGAGG
AAAGGGGATCGTTAAGACAAGGAGAAGAAAAGTGGCACACCAAATGATGG
ATGAACGCTTGGCC
back to top

protein sequence of NO07G01650.1

>NO07G01650.1-protein ID=NO07G01650.1-protein|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MMQLKNKQALGVCLLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAG
DSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYK
DKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELT
KMVNHYCFGAPLDGATAAADEEIKDV*
back to top
Synonyms
Publications