NO07G01530, NO07G01530 (gene) Nannochloropsis oceanica

Overview
NameNO07G01530
Unique NameNO07G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1114
Alignment locationchr7:466132..467245 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:466132..467245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G01530 vs. NCBI_GenBank
Match: XP_005855263.1 (hypothetical protein NGA_0074500 [Nannochloropsis gaditana CCMP526] >EKU21088.1 hypothetical protein NGA_0074500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 133.7 bits (335), Expect = 2.600e-28
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0 
Query:    1 MFGVARGL-TRVAPAKNQAQLVARRMMGGDGGHHPHLVFEAPFNKVFVGALVGGGVTVGAGLIIASWKFQNKKQGFTK 78
            M GV RG+  RV PAKNQAQL++RRMMGGDGGHHPH VFE PFNK FV  LVGGGVT+G GL++ASWKFQNKKQGFTK
Sbjct:    1 MLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVVASWKFQNKKQGFTK 78
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BLAST of NO07G01530 vs. NCBI_GenBank
Match: EWM27143.1 (hypothetical protein Naga_100010g8 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 6.300e-19
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 0 
Query:    1 MFGVARGL-TRVAPAKNQAQLVARRMMGGDGGHHPHLVFEAPFNKVFVGALVGGGVTVGAGLII 64
            M GV RG+  RV PAKNQAQL++RRMMGGDGGHHPH VFE PFNK FV  LVGGGVT+G GL++
Sbjct:   16 MLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV 79
The following BLAST results are available for this feature:
BLAST of NO07G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855263.12.600e-2878.21hypothetical protein NGA_0074500 [Nannochloropsis ... [more]
EWM27143.16.300e-1973.44hypothetical protein Naga_100010g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000719NSK000719Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01530.2NO07G01530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G01530.1NO07G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100010g8gene3329Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01530.2NO07G01530.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G01530.1NO07G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01530 ID=NO07G01530|Name=NO07G01530|organism=Nannochloropsis oceanica|type=gene|length=1114bp
CCAGCGCGACGAGTCCTAAAACATCACCGGAGGCTGAGGCTGCATCTTGC
TCGTCTCGTCAGCCGCCCGTGCCCAGTTTGTGCGGAAACGCGGGACCCCA
TCCATTCCCTCTGTTACCTTCTTTCCTCTGTATGTGGATGGTCAGCCCCA
GCGAATCCGAGTGGTCAACCTTGCAAATCCCGCATCAAGCAAAGTCGGAC
AAAGGAACCTACCTGTCTCCTAAGAGAAACTTACATTCTAGCCACGCCCT
CCTCTTCACAACAACGCACAGCACCCCATATTCGTAGCCATGTTTGGTGT
CGCTCGTGGACTTACCCGCGTGGCCCCTGCCAAGAACCAGGCGCAGCTCG
TCGCCCGGTAAGATGGTTTGTGGGGACGGAGGGAGTGGGGAGGAGGAGAG
AGGGGATGACGGCCAGAGCATGCGTACACAAGAGCAGCTCCGCGGCTCAG
GTCACTTGCATGTCCAACATAAGAAGCTGTGTTTTCATGGTCTGCTACCG
CATGCCAGTTCACGCTTACACCATTTCCTTCCTCTGCATTTCACTGAAAC
CTCACACAGACGCATGATGGGCGGCGACGGCGGACACCACCCCCACCTCG
TCTTTGAGGCCCCGTTCAACAAAGTCTTTGTCGGTGCCCTTGTGGGCGGC
GGCGTGACAGTAGGTGCCGGACTTATCATTGCATCGTGGAAGTTCCAGAA
CAAGAAGCAGgtacgtgtaacgggggatgtggctggatgtaccccatatt
tccttcctcatttcctcttgattctcacatcctcgttttcttttcctgtg
tgcttgcagGGTTTCACCAAGTAAATCAAGAAGCGTGAAACGCGGAAGAG
CGACGTGGATGGGGAAGCTGAAGTTTTATCTTCTTCTATTCTCTAACCCC
TCCCTTGATGGTGTCGATGTTGGAAGCCTGGTGGTGGCAGGGGGCGGATA
CATGAGGGTCAGGGACACCGGTTGTCAAACGATAAGATGAAATCTAGAGG
CATTGGAGGTAGTGGCCTGCACACCCGGCACCTGAGTTATGTAAAGAAAA
AAGAAAGAAGGACGAAAAAACGATCAGAGTGGCCGTAAGCCAGACGAACA
GATCTTTTGAGAGA
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protein sequence of NO07G01530.2

>NO07G01530.2-protein ID=NO07G01530.2-protein|Name=NO07G01530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MVCGDGGSGEEERGDDGQSMRTQEQLRGSGHLHVQHKKLCFHGLLPHASS
RLHHFLPLHFTETSHRRMMGGDGGHHPHLVFEAPFNKVFVGALVGGGVTV
GAGLIIASWKFQNKKQGFTK*
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protein sequence of NO07G01530.1

>NO07G01530.1-protein ID=NO07G01530.1-protein|Name=NO07G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MFGVARGLTRVAPAKNQAQLVARRMMGGDGGHHPHLVFEAPFNKVFVGAL
VGGGVTVGAGLIIASWKFQNKKQGFTK*
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Synonyms
Publications