NO07G01520, NO07G01520 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01520
Unique Name	NO07G01520
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1959
Alignment location	chr7:464157..466115 +

Link to JBrowse

Properties


Property Name	Value
Description	Mitochondrial import inner membrane translocase subunit tim50

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:464157..466115 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
GO:0005743	mitochondrial inner membrane
GO:0016020	membrane
GO:0005739	mitochondrion

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport
GO:0006810	transport

Vocabulary: **INTERPRO**
Term	Definition
IPR036412	HAD-like_sf
IPR027111	Tim50
IPR004274	NIF

Homology

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: XP_005855272.1 (translocase of inner mitochondrial membrane 50-like protein [Nannochloropsis gaditana CCMP526] >EKU21097.1 translocase of inner mitochondrial membrane 50-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 505.8 bits (1301), Expect = 1.400e-139
Identity = 244/334 (73.05%), Postives = 273/334 (81.74%), Query Frame = 0

Query:  111 LKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPYAWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMVVPDEIKQSAPPRRGR 445
            +KL+    AAG AY+ Y+TS  D+S DDVLRASP+G PYAWLYD+VFSPF+NPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPK+GWRYAKRPGVDR LQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRF+QGKH+KDLSKLNRDLRKVVI+DDDP+AF+FQP+NGIRIKPF++ KDKAD SL+KLR FLLALVMEGVADDIP VLRQFQGLDA+QIGDAY SMLR+AQ++E+E+ Q+GLGGLLRS +AFQS+GH L                                    A  VPD+  Q+ PPR GR
Sbjct:   56 IKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGR 389

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: EWM27179.1 (mitochondrial import inner membrane translocase subunit tim50 [Nannochloropsis gaditana])

HSP 1 Score: 505.8 bits (1301), Expect = 1.400e-139
Identity = 244/334 (73.05%), Postives = 273/334 (81.74%), Query Frame = 0

Query:  111 LKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPYAWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMVVPDEIKQSAPPRRGR 445
            +KL+    AAG AY+ Y+TS  D+S DDVLRASP+G PYAWLYD+VFSPF+NPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPK+GWRYAKRPGVDR LQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRF+QGKH+KDLSKLNRDLRKVVI+DDDP+AF+FQP+NGIRIKPF++ KDKAD SL+KLR FLLALVMEGVADDIP VLRQFQGLDA+QIGDAY SMLR+AQ++E+E+ Q+GLGGLLRS +AFQS+GH L                                    A  VPD+  Q+ PPR GR
Sbjct:  110 IKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMGESAQPNSTVAAAAAVPDQPHQTPPPRPGR 443

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: XP_002177133.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51596.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 261.9 bits (668), Expect = 3.500e-66
Identity = 115/220 (52.27%), Postives = 164/220 (74.55%), Query Frame = 0

Query:  159 PFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLR 379
            P   P+ EKLLPDW  +PN+P D P P TLVLDLE+TLV +TWD ++GWR+AKRPGVD+FL++L++YYEIVL+SPS  G+ DP+  +LDK G IMHRLY+++T +  G H+KDL++LNR L ++V+IDDDP   +F P+N IR+KP+ DP D+ D++L+++  FL+ +  EG  +D+PG+LRQ++G+DADQI D     + + +     R Q+GLG L R
Sbjct:    1 PLAKPAHEKLLPDWSQLPNVPQDIPVPHTLVLDLENTLVSSTWDRRYGWRHAKRPGVDKFLRELAQYYEIVLYSPSIDGIADPVVTSLDKDGCIMHRLYREATYYTGGVHVKDLNRLNRPLNRMVVIDDDPSEVQFNPENLIRVKPYADPTDRTDNTLERILPFLVEIAREGY-NDVPGLLRQYEGMDADQIADEQDRRIHELRTHRERRSQQGLGALAR 219

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: EJK76285.1 (hypothetical protein THAOC_01962, partial [Thalassiosira oceanica])

HSP 1 Score: 252.3 bits (643), Expect = 2.800e-63
Identity = 120/234 (51.28%), Postives = 164/234 (70.09%), Query Frame = 0

Query:  147 FPYAWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQ 381
            F  A L D V   +  P REKLLPDW+ IPN+PPD P PP LVLDLE TLV  TWD KFGWRY+KRPGVD+FL  L++YYEIVLF+PS  G+  P+  +LD +G IMH LY++STR+  G H KDLS LNR+++K+V +DD+  A +FQP N I +K + DP D+ D +L+++   L+ +  EG  DDIPG+L+QF+G+DADQI D ++  +   +I+  +  Q+GLG    ++
Sbjct:  104 FEMAGLKDMV-DDYAAPKREKLLPDWNQIPNVPPDMPPPPLLVLDLEHTLVAPTWDRKFGWRYSKRPGVDKFLSTLAQYYEIVLFTPSIDGLAGPVIASLDPKGYIMHHLYRESTRYVNGVHCKDLSSLNRNVKKIVALDDEKAALQFQPDNLICVKAYDDPADRDDDTLERILPLLIEISREGY-DDIPGLLQQFRGMDADQIADEHERRVNNLRIQNSQISQRGLGSFAHAR 335

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: XP_009035542.1 (hypothetical protein AURANDRAFT_24304, partial [Aureococcus anophagefferens] >EGB09478.1 hypothetical protein AURANDRAFT_24304, partial [Aureococcus anophagefferens])

HSP 1 Score: 243.0 bits (619), Expect = 1.700e-60
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 0

Query:  159 PFINPSREKLLPDW-HSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQ 381
            PF+ PSREKLLPDW     NI PD PCP TLVLDL+DTLV ATWD ++GWR+AKRPG ++FL++++KYYEIV+F+ +  GV DP+   LDK G  MHRLY+D+T F +G H KDLSKLNRD+RK+V++D D  A + QP N I +KP+ D  D+ D+ L+ L  FL ALV E V  D+P  L +F   DA  +   Y  ML++A+ K     + GLGG +R +
Sbjct:  114 PFVQPSREKLLPDWPPDYLNISPDVPCPHTLVLDLDDTLVRATWDRRYGWRHAKRPGAEQFLREMAKYYEIVIFTTNIAGVADPVVHALDKDGCAMHRLYRDATMFVRGTHCKDLSKLNRDVRKIVVVDKDRAAVQLQPGNAIIVKPYTDATDRLDTELEDLTPFLAALVNENVR-DVPAALAKFSSNDATVVAAEYGDMLKEAKNKTDAVRKIGLGGFVRGR 335

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: GAX93509.1 (mitochondrial import inner membrane translocase subunit TIM50, partial [Pythium insidiosum])

HSP 1 Score: 241.9 bits (616), Expect = 3.800e-60
Identity = 126/278 (45.32%), Postives = 176/278 (63.31%), Query Frame = 0

Query:  110 ALKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPY---AWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLD--ADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKA 383
            ++ L+ GS++    + F       Q + D L A+P+G  Y   A   + +  P+  PS++KLLPDW  IP +PPD P  P LVLDLEDTLVH+ W  K GWR+AKRPGVD FL+ L++YYEIV+FS ++  + D +   LD++  ++H L ++STR+Y G H+KDLSKLNRDLR VVIIDDDP A++ QP+N I IKP+ D +D+ D  L  L  FL AL  E +  D   VL +F+  D     +   Y S +R  ++++ +  QKGLGG LR + A
Sbjct:  426 SMGLLVGSISGSVLWAFVLDDDMKQRLTDALAATPLGDLYEVVAREVEEIVKPWTEPSKDKLLPDW-PIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLAQYYEIVVFSNNHQFMADDVVTRLDRKQTVLHILARESTRYYNGAHVKDLSKLNRDLRHVVIIDDDPLAYQLQPENAIPIKPYMDGRDRDDHELKDLIPFLKALASERI-PDFRTVLAEFRDEDGVVRDLPAKYASRVRAQELQQQQERQKGLGGFLRGRLA 701

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: GAX10169.1 (hypothetical protein FisN_3Lh365 [Fistulifera solaris])

HSP 1 Score: 241.5 bits (615), Expect = 5.000e-60
Identity = 107/221 (48.42%), Postives = 159/221 (71.95%), Query Frame = 0

Query:  157 FSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLL 378
            F     P  +KLLPDW  +PN+P D P P TLV+DL++TLV +TWD K+G+R+AKRPGVD+FL+ ++ YYEIVLFSPS  G+ DP+  +LDK+G IMHRLY+D+T +  G +IKDL +LNR++ ++V++DDDP+  +F P N I IKP+ DP D+ D++L+++  FL+ +  E    DIP +LRQ+ G+D+DQI D  +  +   +   +++  +GLGGL+
Sbjct:  111 FEEMAVPQYDKLLPDWSQMPNVPHDIPVPHTLVIDLDNTLVSSTWDRKYGYRHAKRPGVDQFLRTMAMYYEIVLFSPSIDGMADPVVTSLDKEGCIMHRLYRDATVYKNGVYIKDLDRLNRNVNRIVVLDDDPEEVQFHPYNVIPIKPYTDPSDRTDNALERITPFLIEIARENYG-DIPTLLRQYHGMDSDQIADEIERRINLIRYDRLQQSSRGLGGLV 330

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: GAX16154.1 (hypothetical protein FisN_3Hh365 [Fistulifera solaris])

HSP 1 Score: 241.1 bits (614), Expect = 6.500e-60
Identity = 107/220 (48.64%), Postives = 158/220 (71.82%), Query Frame = 0

Query:  157 FSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGL 377
            F     P  +KLLPDW  +PN+P D P P TLV+DL++TLV +TWD K+G+R+AKRPGVD+FL+ ++ YYEIVLFSPS  G+ DP+  +LDK+G IMHRLY+D+T +  G +IKDL +LNR++ ++V++DDDP+  +F P N I IKP+ DP D+ D++L+++  FL+ +  E    DIP +LRQ+ G+D+DQI D  +  +   +   +++  +GLGGL
Sbjct:  108 FEEMAVPQYDKLLPDWSQMPNVPHDIPVPHTLVIDLDNTLVSSTWDRKYGYRHAKRPGVDQFLRTMAMYYEIVLFSPSIDGMADPVVTSLDKEGCIMHRLYRDATVYKNGVYIKDLDRLNRNVNRIVVLDDDPEEVQFHPYNVIPIKPYTDPSDRTDNALERITPFLIEIARENYG-DIPTLLRQYHGMDSDQIADEIERRINLIRYDRLQQSSRGLGGL 326

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: ETL78807.1 (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica])

HSP 1 Score: 221.1 bits (562), Expect = 6.900e-54
Identity = 122/284 (42.96%), Postives = 173/284 (60.92%), Query Frame = 0

Query:  113 LIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPY---AWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVAD--DIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLS 392
            L+ GS++    + F    +  +SI + L A+ +G  Y   A   +    PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K GWR+AKRPGVD FL+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G H+KDLS LNRDL++VVI+DDDP A++ QP+N I +KPF + +D+ D  L  L  FL AL  E V D   + G  R   G+  D +   Y + + Q ++++ ++ +KG GG +R + +     HP S
Sbjct:   95 LLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYG-AEEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDGVVRD-LATKYGARVHQLEMQKEQQKKKGFGGFVRGRMSH----HPAS 370

[Close]

BLAST of NO07G01520 vs. NCBI_GenBank
Match: ETP29760.1 (mitochondrial import inner membrane translocase subunit TIM50 [Phytophthora parasitica P10297])

HSP 1 Score: 221.1 bits (562), Expect = 6.900e-54
Identity = 122/284 (42.96%), Postives = 173/284 (60.92%), Query Frame = 0

Query:  113 LIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPY---AWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVAD--DIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLS 392
            L+ GS++    + F    +  +SI + L A+ +G  Y   A   +    PF +PSR+KLLPDW  IP +P D P  P LVLDLEDTLVH+ W  K GWR+AKRPGVD FL+ L +YYEIV+FS  N+G  + I   LD +   +H L +D+TR+  G H+KDLS LNRDL++VVI+DDDP A++ QP+N I +KPF + +D+ D  L  L  FL AL  E V D   + G  R   G+  D +   Y + + Q ++++ ++ +KG GG +R + +     HP S
Sbjct:   95 LLAGSISGSIVWNFVLDDSIKKSIKETLGATFLGDIYVVIAKKVEETVKPFTDPSRQKLLPDW-PIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFS-QNYG-AEEIVQKLDPKQCALHVLSRDATRYLNGAHVKDLSNLNRDLKQVVILDDDPAAYQLQPENAIPVKPFTNGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDGVVRD-LATKYGARVHQLEMQKEQQKKKGFGGFVRGRMSH----HPAS 370

The following BLAST results are available for this feature:

BLAST of NO07G01520 vs. NCBI_GenBank

BLAST of NO07G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005855272.1	1.400e-139	73.05	translocase of inner mitochondrial membrane 50-lik...	[more]
EWM27179.1	1.400e-139	73.05	mitochondrial import inner membrane translocase su...	[more]
XP_002177133.1	3.500e-66	52.27	predicted protein, partial [Phaeodactylum tricornu...	[more]
EJK76285.1	2.800e-63	51.28	hypothetical protein THAOC_01962, partial [Thalass...	[more]
XP_009035542.1	1.700e-60	52.47	hypothetical protein AURANDRAFT_24304, partial [Au...	[more]
GAX93509.1	3.800e-60	45.32	mitochondrial import inner membrane translocase su...	[more]
GAX10169.1	5.000e-60	48.42	hypothetical protein FisN_3Lh365 [Fistulifera sola...	[more]
GAX16154.1	6.500e-60	48.64	hypothetical protein FisN_3Hh365 [Fistulifera sola...	[more]
ETL78807.1	6.900e-54	42.96	mitochondrial import inner membrane translocase su...	[more]
ETP29760.1	6.900e-54	42.96	mitochondrial import inner membrane translocase su...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL101	nonsL101	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR071	ncniR071	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR130	ngnoR130	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000720	NSK000720	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO07G01520.1	NO07G01520.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669073	gene_2474	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100010g6	gene3327	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO07G01520.1	NO07G01520.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO07G01520 ID=NO07G01520|Name=NO07G01520|organism=Nannochloropsis oceanica|type=gene|length=1959bp
ATTTACAGAAGCATACAGGAGCATGACCAGTACCGCCGTAGTCGCCAGCC
TGGGTCGACGTCTGCTCGGGAGGGGCGTGCCAAAACAGCCACGACGCGCA
CTGCGAGCTGCTGCGGAAGGGGAGGCTTGCAGCGGGGCTGGCGCGCCATT
AAGCACAAGCACCACCACAGCCACATCTCGGGAAGCACGACGTAAGAAGT
GGCTGAAGGAAAAGGCAGCCCCTGGAGAAGGTTCGGCAGCGGGGGCTGCG
TCGGCCAAGgtacgttgcgtacgggctaagggtggtgaggtggtgaagga
caccttggaggggaggaccttagagggagccaagatggaaaacatcatac
gcacgcagcacgattgcaattgattgttttcttgttgcccctatactact
aaaatctttgatactcatcatctccacccctcatcctcatccaccagACG
GCCGGCGTATCACAAGCCACTGCTGCACAAGCATCCTCATCCACGACCGC
AGCCCTTTCCCCCGCCCCTAGCAACCCTGCCTCCACTGCCCTTAAACTCA
TCGGTGGGAGCGTAGCAGCAGGCGGGGCATATCTTTTCTATCAAACTTCC
ACCACCGATCAAAGTATTGATGATGTCCTTCGTGCCTCCCCCGTCGGCTT
CCCCTACGCGTGGCTCTACGACTCCGTCTTCTCCCCCTTCATTAATCCCT
CCCGAGAAAAACTTCTCCCCGACTGGCACTCCATCCCCAACATCCCTCCT
GATGCCCCCTGCCCTCCCACCCTCGTGCTCGACCTCGAAGACACCCTCGT
CCACGCTACCTGGGACCCTAAATTCGGCTGGCGTTACGCCAAACGGCCAG
GGGTCGATCGCTTCCTCCAAGATCTGAGCAAATACTATGAAATCGTCCTC
TTCTCCCCATCCAATTTCGGGGTCGTCGATCCCATCACCTGGACGCTGGA
CAAGCAAGGGCTGATCATGCACCGTCTCTACAAGGACTCTACGCGGTTCT
ACCAGGGCAAACACATCAAGGATCTCTCAAAGCTTAACCGCGACCTTCGA
AAAGTCGTCATCATCGACGACGACCCCGACGCATTCCGATTCCAACCGCA
GAATGGCATCCGTATCAAGCCCTTCAAAGACCCCAAGGATAAAGCAGACT
CCTCCCTGGACAAGCTCCGCGCTTTCCTCCTCGCCTTGGTCATGGAAGGG
GTCGCCGATGACATCCCGGGCGTGCTCAGACAGTTCCAAGGCCTTGATGC
CGATCAGATTGGCGACGCGTACAAGTCCATGCTCCGGCAAGCCCAGATCA
AGGAAATGGAAAGGCACCAAAAGGGGTTGGGAGGGCTCTTGCGTTCGCAA
AAAGCTTTTCAAAGCATCGGCCACCCCCTCTCTACCCCAGCAGCAGCAGC
AGCAGCACCTGCCCGACTGTCGGCCAAGGATATCGTGGGTCAGTACGAGG
GAGGGACAGAGGGAGGAAAGCCAGCAGGAGCAGCTGCAGCGATGGTAGTA
CCGGACGAAATTAAGCAAAGCGCCCCCCCCCGCCGGGGTCGGTGAAGAAG
GGCAAGATCTGGGCGTGGTATCAGGACTATATGAAAGAGGCGGAGGAGGA
CCAGAGGAGGAAATTGGAATTGTGGAGCAAGAAACAGCAGCAGAGGGAGG
AAGAGGCGAGGAGACGGGCAATGGCTGCGCAGGCGGCCGGGGGTGTGTGA
GATTCAGGGAAATTTGGAGGCAGGGAGAAAGGGAGAGAGCGAGGAAAAGG
GAGGGGGAGATAGGTATTGAAGGGGAAGTGAAGCGTTGAGGGAAGGAAAT
TTAAAAGGAAAAATAAAATGAAGTCGAATCGGTGATTTGCAAGTTTCTCA
TGATGTCTTCTTTTCTGAATATAGCTTTGCAGCGAAGTGTTTTCGATTTT
TTGTGGAAGCAAACCGTTGAGGACCGTTGAGGAGGAAATGGACATGAGAG
TGGAAGGAC

protein sequence of NO07G01520.1

>NO07G01520.1-protein ID=NO07G01520.1-protein|Name=NO07G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MTSTAVVASLGRRLLGRGVPKQPRRALRAAAEGEACSGAGAPLSTSTTTA
TSREARRKKWLKEKAAPGEGSAAGAASAKTAGVSQATAAQASSSTTAALS
PAPSNPASTALKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPYA
WLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHAT
WDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQG
LIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGI
RIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQI
GDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLSTPAAAAAAP
ARLSAKDIVGQYEGGTEGGKPAGAAAAMVVPDEIKQSAPPRRGR*

Synonyms

Publications