NO07G01410, NO07G01410 (gene) Nannochloropsis oceanica

Overview
NameNO07G01410
Unique NameNO07G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr7:434521..435939 -

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Properties
Property NameValue
DescriptionMitochondrial protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:434521..435939 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036714SDH_sf
IPR005631SDH
Homology
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_002903388.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55812.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 123.6 bits (309), Expect = 6.600e-25
Identity = 72/170 (42.35%), Postives = 102/170 (60.00%), Query Frame = 0
Query:   15 AARRSLASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            AARRS    T  +++  R +   +        +++ DQ +R  ER+ +   DH+  K   PA S         VD++   RKR++YRSKQRGWLEVDLLLG WA++NV  L+  E  +YE +LN+ETIDIFN I+G    P  L+ + ++KRLQEY ++SP GKAS   +
Sbjct:    4 AARRSSGRQTLRSMSTNREVDDKAFLK-----NISQDQAKRALERSAAIRADHISAKGNFPASSQGDH----DVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSDELKQYEDILNEETIDIFNYISGKSAVPHRLD-TPMMKRLQEYCLTSPLGKASTEGF 163          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: GAY01496.1 (Hypothetical protein PINS_009330 [Pythium insidiosum] >GAX97999.1 Hypothetical protein PINS_005839 [Pythium insidiosum])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   31 IRALSSASHTNPPPSPDLTPDQIRRIG-ERTKSQLEDHLKLKTE-VPAYSLDPSAPAG--PVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVK 189
            +R+LS+A      PS D T   ++ I  E+    L    +++ + V A    PS   G   + A+   RKR++YRSKQRGWLEVDLLLGSWA++NV  L+  E  +YE +LNQETIDIFN I+G    P EL+ + I+KR+Q+Y  SSP GKAS   +   K
Sbjct:   27 MRSLSTA------PSSDFTQGFLKSISPEQADKALRRGAEIRAQHVAAKDAYPSESQGEREISADEANRKRIIYRSKQRGWLEVDLLLGSWASQNVMALSAEELKQYEDILNQETIDIFNYISGKDAIPAELD-TPIMKRIQDYCFSSPLGKASIEGFANNK 181          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_009833593.1 (hypothetical protein H257_09161 [Aphanomyces astaci] >ETV76681.1 hypothetical protein H257_09161 [Aphanomyces astaci])

HSP 1 Score: 121.3 bits (303), Expect = 3.300e-24
Identity = 62/133 (46.62%), Postives = 87/133 (65.41%), Query Frame = 0
Query:   52 QIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            Q  R+ ER     ++H   + E PA S         +DA+   RKR++YRSKQRGWLEVDLL+G WA+ENV+TLT  E  +YE +LN+ETIDIFN I+G    P E+  + ++KR+Q++  S+P GKAS + +
Sbjct:   40 QESRVQERYVQMRKEHFGRREEFPASSQGDI----DIDADTANRKRVIYRSKQRGWLEVDLLMGRWASENVWTLTADELQQYEDILNRETIDIFNFISGKDAIPEEV-NTPVMKRIQDFCFSNPLGKASIQGF 167          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_009531410.1 (hypothetical protein PHYSODRAFT_256191 [Phytophthora sojae] >EGZ13981.1 hypothetical protein PHYSODRAFT_256191 [Phytophthora sojae])

HSP 1 Score: 119.8 bits (299), Expect = 9.500e-24
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0
Query:   88 VDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKAS 181
            VDAN   RKR++YRSKQRGWLEVDLLLG WA++NV  L+  E  +YE +LN+ETIDIFN I+G  P P  L+ + ++KRLQ+Y ++SP GKAS
Sbjct:   30 VDANEANRKRVIYRSKQRGWLEVDLLLGRWASQNVMALSSDELRQYEDILNEETIDIFNYISGKSPVPARLD-TPMMKRLQDYCLASPLGKAS 121          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: OQR83814.1 (hypothetical protein THRCLA_23121, partial [Thraustotheca clavata])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 0
Query:   55 RIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            R  +R     ++H  +KTE P    + S     +DA    RKR++YRSKQRGWLEVDLLLG WA+ENV +L+  E  +YE +LN+ETIDIFN I+G    P E++ + ++KRLQ+Y  +SP GKAS + +
Sbjct:    5 RAQQRNDQMRKEHFAVKTEFP----EASQGDVVIDAVVANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLSNEELRQYEDILNRETIDIFNFISGKDTVPPEID-TPMMKRLQDYCKTSPLGKASIKGF 129          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: GAX26601.1 (hypothetical protein FisN_21Lh068 [Fistulifera solaris])

HSP 1 Score: 117.1 bits (292), Expect = 6.200e-23
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 0
Query:   93 IRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKD 190
            +RRKRL+YRSKQRGWLEVDLLLG+WA +NV  L+  + DEYE  +NQETIDI+NII   +P P EL+G+ I+  +QE+A ++P GKA    Y+ VK+
Sbjct:   68 VRRKRLIYRSKQRGWLEVDLLLGTWAHQNVPQLSAQQLDEYESFVNQETIDIYNIITLRLPVPDELKGT-IVDEIQEWARANPLGKADPLKYKQVKE 163          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: GAX23248.1 (hypothetical protein FisN_21Hh068 [Fistulifera solaris])

HSP 1 Score: 117.1 bits (292), Expect = 6.200e-23
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 0
Query:   93 IRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKD 190
            +RRKRL+YRSKQRGWLEVDLLLG+WA +NV  L+  + DEYE  +NQETIDI+NII   +P P EL+G+ I+  +QE+A ++P GKA    Y+ VK+
Sbjct:   68 VRRKRLIYRSKQRGWLEVDLLLGTWAHQNVPQLSAQQLDEYESFVNQETIDIYNIITLRLPVPDELKGT-IVDEIQEWARANPLGKADPLKYKQVKE 163          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: GBG25359.1 (Succinate dehydrogenase assembly factor 2, mitochondrial [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 116.7 bits (291), Expect = 8.100e-23
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 0
Query:   25 PTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGP-VDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVK 189
            PT V L +  +    +   P   +  DQ  R         ++H  ++   P  S  PS   GP VDA    RKRLLYRSKQRGWLEVDLLLGSWAA+N+ TL++ EC ++E +LN ET+DI+N+I+G M  P  L+ + I+++LQ+Y  S P G A    Y  +K
Sbjct:    4 PTMVDLSKFATEEEQSKRLPHHAVLRDQELR---------KEHHAIRQSYPE-SAQPS--EGPKVDAELAYRKRLLYRSKQRGWLEVDLLLGSWAADNIMTLSLEECAQFEAILNMETLDIYNMISGQMQVPDFLQ-TPIMEKLQKYCQSKPVGTADPTMYAKIK 155          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: CCA27700.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 115.9 bits (289), Expect = 1.400e-22
Identity = 64/137 (46.72%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   48 LTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            LT DQ  R+ +R +   + HL L +E               +    R+KRLLYRS+QRGWLEVDLLLGSW  ++V  L  AE D +E +LNQETIDI+N I    P P EL+ + ++ RLQEY  +SP GKAS   Y
Sbjct:   53 LTEDQTARVEQRDREIRKQHLALPSE-----------GSEDEVKLARKKRLLYRSRQRGWLEVDLLLGSWTQKSVEGLQEAELDHFEAILNQETIDIYNYITKQRPIPSELD-TNVMHRLQEYCANSPLGKASMDGY 177          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: OWZ18048.1 (hypothetical protein PHMEG_0007919 [Phytophthora megakarya])

HSP 1 Score: 114.0 bits (284), Expect = 5.200e-22
Identity = 75/179 (41.90%), Postives = 104/179 (58.10%), Query Frame = 0
Query:   15 AARRSLASATPTAVTLIRALSSASHTNPPPS-----PDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVK 189
            AA R LA+   ++ T    L S   TNP         +++ +Q ++  ER+ +   DH+  K + P  S         VD++   RKR++YRSKQRG LEVDLLLG WA++NV  L+  E  +YE +LN+ETIDIFN I+G    P  L  + ++KRLQEY +SSP GKAS   +E  K
Sbjct:    5 AAIRVLAATRRSSRTQAFRLLS---TNPEVDNNAFVKNISSEQAKKALERSATIRADHVAAKGDFPIASQGDH----QVDSDEANRKRIIYRSKQRGLLEVDLLLGRWASQNVMQLSNDELKQYEDILNEETIDIFNYISGKSSVPERL-NTPMMKRLQEYCLSSPLGKASVEGFEENK 175          
The following BLAST results are available for this feature:
BLAST of NO07G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002903388.16.600e-2542.35conserved hypothetical protein [Phytophthora infes... [more]
GAY01496.11.100e-2445.06Hypothetical protein PINS_009330 [Pythium insidios... [more]
XP_009833593.13.300e-2446.62hypothetical protein H257_09161 [Aphanomyces astac... [more]
XP_009531410.19.500e-2460.22hypothetical protein PHYSODRAFT_256191 [Phytophtho... [more]
OQR83814.11.200e-2347.69hypothetical protein THRCLA_23121, partial [Thraus... [more]
GAX26601.16.200e-2357.73hypothetical protein FisN_21Lh068 [Fistulifera sol... [more]
GAX23248.16.200e-2357.73hypothetical protein FisN_21Hh068 [Fistulifera sol... [more]
GBG25359.18.100e-2343.03Succinate dehydrogenase assembly factor 2, mitocho... [more]
CCA27700.11.400e-2246.72conserved hypothetical protein [Albugo laibachii N... [more]
OWZ18048.15.200e-2241.90hypothetical protein PHMEG_0007919 [Phytophthora m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000733NSK000733Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01410.1NO07G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552202gene_2462Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g38gene3314Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01410.1NO07G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01410 ID=NO07G01410|Name=NO07G01410|organism=Nannochloropsis oceanica|type=gene|length=1419bp
GTGGTCACAAGCGCTTTCCTGTGGTCTTTATTGAGGTGAAATTCCGTTGC
GCTTCACCTCCTGGCTGCTGTCTGCGTCACCCTCCCTTCTTCCTTTTTAT
TTTATTTATTTATATATTCTCTATTAGGGTTCCGATTACACACATCATCA
CCACTCGGTCTCTTTCCACAAATTCTATGCATACAGGAAACACCTCTAGC
TACCCGGCTCGCAACTGCCCTGCTGCGTACGCATCGTCACGCAATGTTAG
TCATGCAGCCTCGTGCCCTTCTCCTCACTGCCAAGGCGGCGCGTCGTAGT
CTAGCGAGTGCCACACCCACTGCAGTGACCTTAATACGCGCCCTTTCTTC
GGCCTCGCACACGAATCCGCCGCCTTCACCCGACCTGACCCCGGACCAGg
tatttgtttcgagatggcaagcataggctggtctcctatctccctcggaa
gcttgagcgctcgtcagaacgatcggtacaattacctgtgccaggcgcgg
caccacttgttccgtgcaactcttcttacaacttttcttcgtcgcttgat
cttttctgtttcagcaagttcacgggccgcattcccatggaaaccacaca
gacgtcgctagacagccccctcaccctcacctggcggcattcaatcaccc
acggctcccccattccacccaatcctcccttcttgacctccaagccacaa
ccccatacatgcgaaaacatccgatcgaacatcaaagaccacctgcgcct
cagaacttgcatccccccagccttgaccccacctcccttcctttctccct
caaactcatcccacccccttccctcctcctccccttccacagATCCGTCG
CATCGGCGAACGTACTAAATCGCAACTCGAAGACCATCTTAAGCTCAAAA
CGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCACCCGCAGGGCCTGTG
GACGCTAACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGCAAACAAAG
GGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGCGGAGAATG
TTTTTACACTGACGGTGGCCGAATGTGATGAGTATGAGAAGCTCTTGAAT
CAAGAAACGATCGATATCTTCAATATCATCAATGGTGCAATGCCCCCGCC
GGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGAGTATGCCA
TGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGACGGTGAAG
GATCGAACGGGGATGATCTGAATTGTAAATTTTGAGATTGTAAGGGAGTT
TGAGAAGTAAAGTAGGCGTGTGGGATAGAGTGGAGGAAGGCGAGTGCTAC
GAAGGCAAGGGGTTGTGTATGTGAAGAAACAGAATTAAACGCAGAGACAA
AAGTGCGGAGGTGGGTTGA
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protein sequence of NO07G01410.1

>NO07G01410.1-protein ID=NO07G01410.1-protein|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLVMQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTP
DQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLY
RSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIING
AMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI*
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Synonyms
Publications