NO07G01410, NO07G01410 (gene) Nannochloropsis oceanica

Overview
NameNO07G01410
Unique NameNO07G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr7:434521..435939 -

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Properties
Property NameValue
DescriptionMitochondrial protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:434521..435939 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036714SDH_sf
IPR005631SDH
Homology
BLAST of NO07G01410 vs. NCBI_GenBank
Match: EWM27240.1 (mitochondrial protein [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 1.200e-66
Identity = 136/192 (70.83%), Postives = 157/192 (81.77%), Query Frame = 0
Query:    6 PRALLLTAKAARRS---LASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI 195
            P A LL + AARRS   L +A  TA    R LSS++H+ PPPSP+LTP Q+RRIGERTK+QL+DHL+LKT+VP  SLDP+AP GPVD + IRRKRLLYRSKQRGWLEVDLLLGSWAAENV +L+  E DEYEK+LN ETIDIFN++NGA+ PP  L+GSKIL RLQEYA SSPFG AS RTYE VKDRTG+I
Sbjct:    4 PCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: CBJ33347.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = 0
Query:   47 DLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSA-PAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGM 194
            +LTP+++ R+G RT+   +DH+ L TE P  SL P    A  V  + +RRKRL+YRSKQRGWLEVDLLLG+WA  NV  L+ A+ D YE +LN ET+DIFN I G   PP  ++ + +L RLQ Y  S+P G++ A +Y + K  + +
Sbjct:   63 ELTPEEVLRVGARTQEMWKDHVALTTEFPDASLPPGGHEASSVSPDAVRRKRLVYRSKQRGWLEVDLLLGTWAERNVAGLSAADMDSYEDILNLETVDIFNFITGNADPPAFVD-APMLARLQAYVKSNPLGQSPA-SYASAKRESNL 208          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_012204520.1 (hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65] >KDO24781.1 hypothetical protein SPRG_20818 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 131.3 bits (329), Expect = 3.200e-27
Identity = 83/183 (45.36%), Postives = 109/183 (59.56%), Query Frame = 0
Query:    4 MQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIING--AMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            M  RA +L A+AA R  A A  T         S+ H N PP   +T  Q  R   R +   +DH  +K E P    D S     +DA+   RKR++YRSKQRGWLEVDLLLG WA+ENV +LT  E  +YE +LN+ETIDIFN I+G  A+PP ++   + ++KRLQ Y  +SP GKAS + +
Sbjct:    1 MLARASILYARAAPRMAARAFSTE-------HSSFHANLPPL-SITEAQELRAQVRNEQMRKDHFAIKAEYP----DASQGEEAIDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDAVPPEID---TPMMKRLQAYCKTSPLGKASIQGF 168          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_012211933.1 (hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65] >KDO17362.1 hypothetical protein SPRG_17211 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 130.6 bits (327), Expect = 5.400e-27
Identity = 82/181 (45.30%), Postives = 107/181 (59.12%), Query Frame = 0
Query:    4 MQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            M  RA +L A+AA R  A A  T         S+ H N PP   +T  Q  R   R +   +DH  +K E P    D S     +DA+   RKR++YRSKQRGWLEVDLLLG WA+ENV +LT  E  +YE +LN+ETIDIFN I+G    P E++ + ++KRLQ Y  +SP GKAS + +
Sbjct:    1 MLARASILYARAAPRMAARAFSTE-------HSSFHANLPPL-SITEAQELRAQVRNEQMRKDHFAMKAEYP----DASQGEEAIDADKANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDVVPPEID-TPMMKRLQAYCKTSPLGKASIQGF 168          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: OQR98107.1 (hypothetical protein ACHHYP_20400 [Achlya hypogyna])

HSP 1 Score: 129.4 bits (324), Expect = 1.200e-26
Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = 0
Query:   17 RRSLASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            R + A A P     +    S+ H N PP   +T  Q  R  ER     ++H  +K E P    D S     +DA+   RKR++YRSKQRGWLEVDLLLG WA+ENV +LT  E  +YE +LN+ETIDIFN I+G    P E++ + ++KRLQ Y  +SP GKAS + +
Sbjct:    4 RAARAVARPRFTRALSTEHSSFHANLPPL-SITEAQEMRAQERNAQMRKEHFAMKAEFP----DASQGDVSIDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTKEELSQYEDILNRETIDIFNFISGKDTVPPEID-TPMMKRLQAYCKTSPLGKASIQGF 165          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_008611228.1 (hypothetical protein SDRG_07186 [Saprolegnia diclina VS20] >EQC35478.1 hypothetical protein SDRG_07186 [Saprolegnia diclina VS20])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 80/181 (44.20%), Postives = 105/181 (58.01%), Query Frame = 0
Query:    4 MQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            M  RA +L  +AA R  A A  T         S+ H N PP   +T  Q  R   R +   ++H   K E P    D S     +DA+   RKR++YRSKQRGWLEVDLLLG WA+ENV +LT  E  +YE +LN+ETIDIFN I+G    P E++ + ++KRLQ Y  +SP GKAS + +
Sbjct:    1 MLARASILCGRAAPRMAARAFSTE-------HSSFHANLPPL-SITEAQELRAQVRNEQMRKEHFASKAEYP----DASQGEKAIDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTADELRQYEDILNRETIDIFNFISGKDTVPPEID-TPMMKRLQAYCKTSPLGKASLQGF 168          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_008893576.1 (hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >ETI44775.1 hypothetical protein F443_10531 [Phytophthora parasitica P1569] >ETL91298.1 hypothetical protein L917_10128 [Phytophthora parasitica] >ETM44644.1 hypothetical protein L914_10150 [Phytophthora parasitica] >ETN21850.1 hypothetical protein PPTG_01936 [Phytophthora parasitica INRA-310] >ETO73440.1 hypothetical protein F444_10621 [Phytophthora parasitica P1976] >ETP42694.1 hypothetical protein F442_10428 [Phytophthora parasitica P10297] >KUF80474.1 Succinate dehydrogenase assembly factor 2 [Phytophthora nicotianae] >KUF94525.1 hypothetical protein AM588_10007584 [Phytophthora nicotianae])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 76/176 (43.18%), Postives = 105/176 (59.66%), Query Frame = 0
Query:   10 LLTAKAARRSLASATPTAVTLIRALSSASHTNPPPS-----PDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKAS 181
            +L  K  +   A+   + +  +RALS    TNP          ++ DQ +R  ER+ +   DH+  K + PA S         VD++   RKR++YRSKQRGWLEVDLLLG WA++NV  LT  E  +YE +LN+ETIDIFN I+G    P  L+ + ++KRLQEY ++SP GKAS
Sbjct:    1 MLRIKLTQVLAAARRSSRLQTLRALS----TNPDVDDKAFLKSISQDQAKRALERSAAIRADHISAKGDFPASSQGDH----QVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRLD-TPMMKRLQEYCLTSPLGKAS 167          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: ETK84784.1 (hypothetical protein L915_10288 [Phytophthora parasitica] >ETL38209.1 hypothetical protein L916_10190 [Phytophthora parasitica] >ETP14621.1 hypothetical protein F441_10468 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 76/180 (42.22%), Postives = 105/180 (58.33%), Query Frame = 0
Query:   10 LLTAKAARRSLASATPTAVTLIRALSSASHTNPPPS-----PDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            +L  K  +   A+   + +  +RALS    TNP          ++ DQ +R  ER+ +   DH+  K + PA S         VD++   RKR++YRSKQRGWLEVDLLLG WA++NV  LT  E  +YE +LN+ETIDIFN I+G    P  L+ + ++KRLQEY + SP GKAS   +
Sbjct:    1 MLRIKLTQVLAAARRSSRLQTLRALS----TNPDVDDKAFLKSISQDQAKRALERSAAIRADHISAKGDFPASSQGDH----QVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLTSDELQQYEDILNEETIDIFNYISGKSAVPQRLD-TPMMKRLQEYCLMSPLGKASIEAF 171          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: POM66210.1 (Succinate dehydrogenase subunit Emi5 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 0
Query:   48 LTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKAS 181
            ++ +Q ++  ER+ S   DH+  K + P+     S     VD++   RKR++YRSKQRGWLEVDLLLG WA++NV  L+  E  +YE +LN+ETIDIFN I+G    P +L+ + ++KRLQEY +SSP GKAS
Sbjct:   40 ISSEQAKKALERSASIRADHIATKGDFPS----ASHGEHQVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSKDELKQYEDILNEETIDIFNYISGKSDVPEQLD-TPMMKRLQEYCLSSPLGKAS 167          
BLAST of NO07G01410 vs. NCBI_GenBank
Match: XP_008872066.1 (hypothetical protein H310_08184 [Aphanomyces invadans] >ETV99510.1 hypothetical protein H310_08184 [Aphanomyces invadans])

HSP 1 Score: 123.6 bits (309), Expect = 6.600e-25
Identity = 65/137 (47.45%), Postives = 89/137 (64.96%), Query Frame = 0
Query:   48 LTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTY 185
            +T  Q  R+ ER     ++H   +TE PA     S     +DA+   RKR++YRS+QRGWLEVDLL+G WA+ENV+TLT  E  +YE +LN+ETIDIFN I+G    P EL  + I+KR+Q +  S+P GKAS + +
Sbjct:   37 ITEVQENRVQERYVQMRKEHFGRRTEFPA----ASQGEVDIDADTANRKRVIYRSRQRGWLEVDLLMGRWASENVWTLTADELQQYEDILNRETIDIFNFISGKDEIPEEL-NTPIMKRIQAFCFSNPLGKASIQGF 168          
The following BLAST results are available for this feature:
BLAST of NO07G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27240.11.200e-6670.83mitochondrial protein [Nannochloropsis gaditana][more]
CBJ33347.11.200e-2947.97conserved unknown protein [Ectocarpus siliculosus][more]
XP_012204520.13.200e-2745.36hypothetical protein SPRG_20818 [Saprolegnia paras... [more]
XP_012211933.15.400e-2745.30hypothetical protein SPRG_17211 [Saprolegnia paras... [more]
OQR98107.11.200e-2644.64hypothetical protein ACHHYP_20400 [Achlya hypogyna... [more]
XP_008611228.11.000e-2544.20hypothetical protein SDRG_07186 [Saprolegnia dicli... [more]
XP_008893576.15.100e-2543.18hypothetical protein PPTG_01936 [Phytophthora para... [more]
ETK84784.15.100e-2542.22hypothetical protein L915_10288 [Phytophthora para... [more]
POM66210.15.100e-2548.12Succinate dehydrogenase subunit Emi5 [Phytophthora... [more]
XP_008872066.16.600e-2547.45hypothetical protein H310_08184 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000733NSK000733Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01410.1NO07G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552202gene_2462Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g38gene3314Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01410.1NO07G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01410 ID=NO07G01410|Name=NO07G01410|organism=Nannochloropsis oceanica|type=gene|length=1419bp
GTGGTCACAAGCGCTTTCCTGTGGTCTTTATTGAGGTGAAATTCCGTTGC
GCTTCACCTCCTGGCTGCTGTCTGCGTCACCCTCCCTTCTTCCTTTTTAT
TTTATTTATTTATATATTCTCTATTAGGGTTCCGATTACACACATCATCA
CCACTCGGTCTCTTTCCACAAATTCTATGCATACAGGAAACACCTCTAGC
TACCCGGCTCGCAACTGCCCTGCTGCGTACGCATCGTCACGCAATGTTAG
TCATGCAGCCTCGTGCCCTTCTCCTCACTGCCAAGGCGGCGCGTCGTAGT
CTAGCGAGTGCCACACCCACTGCAGTGACCTTAATACGCGCCCTTTCTTC
GGCCTCGCACACGAATCCGCCGCCTTCACCCGACCTGACCCCGGACCAGg
tatttgtttcgagatggcaagcataggctggtctcctatctccctcggaa
gcttgagcgctcgtcagaacgatcggtacaattacctgtgccaggcgcgg
caccacttgttccgtgcaactcttcttacaacttttcttcgtcgcttgat
cttttctgtttcagcaagttcacgggccgcattcccatggaaaccacaca
gacgtcgctagacagccccctcaccctcacctggcggcattcaatcaccc
acggctcccccattccacccaatcctcccttcttgacctccaagccacaa
ccccatacatgcgaaaacatccgatcgaacatcaaagaccacctgcgcct
cagaacttgcatccccccagccttgaccccacctcccttcctttctccct
caaactcatcccacccccttccctcctcctccccttccacagATCCGTCG
CATCGGCGAACGTACTAAATCGCAACTCGAAGACCATCTTAAGCTCAAAA
CGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCACCCGCAGGGCCTGTG
GACGCTAACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGCAAACAAAG
GGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGCGGAGAATG
TTTTTACACTGACGGTGGCCGAATGTGATGAGTATGAGAAGCTCTTGAAT
CAAGAAACGATCGATATCTTCAATATCATCAATGGTGCAATGCCCCCGCC
GGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGAGTATGCCA
TGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGACGGTGAAG
GATCGAACGGGGATGATCTGAATTGTAAATTTTGAGATTGTAAGGGAGTT
TGAGAAGTAAAGTAGGCGTGTGGGATAGAGTGGAGGAAGGCGAGTGCTAC
GAAGGCAAGGGGTTGTGTATGTGAAGAAACAGAATTAAACGCAGAGACAA
AAGTGCGGAGGTGGGTTGA
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protein sequence of NO07G01410.1

>NO07G01410.1-protein ID=NO07G01410.1-protein|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLVMQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTP
DQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLY
RSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIING
AMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI*
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Synonyms
Publications