NO07G01400, NO07G01400 (gene) Nannochloropsis oceanica

Overview
NameNO07G01400
Unique NameNO07G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr7:433595..434287 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:433595..434287 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_029936781.1 (DUF1772 domain-containing protein [Sphingomonas sp. UNC305MFCol5.2])

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-10
Identity = 63/191 (32.98%), Postives = 79/191 (41.36%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHMVRTWLGL 208
            L +  L  +ALFAGAALY+S   HPAR              K D +AAL +W  SY RAA LQ   A++ GV G    +       W  GG ++  NVP+TLL +   N +LKA                               E+ +  PE                  T+ LL  WGNLH VRT LGL
Sbjct:    2 LALAALICAALFAGAALYVSFAEHPAR-------------MKLDDRAALTQWKPSYDRAAILQASLAILGGVLGAAAWYRWQGNWFWLAGGFVLFLNVPYTLLVVWSTNGKLKA------------------------------TELDQAGPE------------------TRALLVKWGNLHFVRTLLGL 131          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_030538554.1 (DUF1772 domain-containing protein [Sphingobium sp. DC-2])

HSP 1 Score: 75.1 bits (183), Expect = 3.200e-10
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            + + +V L S+ LF GAA YI+LV HPAR  L                  L +W  SY+RA P+Q   AV+ GV GL   + L K   W  G   +LAN PFTL  + PVN  L A     AD    A++
Sbjct:    1 MIISLVALLSATLFTGAAFYITLVEHPARLGLGDG-------------PMLQQWQPSYKRALPIQSGLAVIGGVAGLIAGY-LTKDWLWVAGSVALLANWPFTLWAIFPVNKRLMALNPRLADFESRAML 116          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_086130209.1 (DUF1772 domain-containing protein [Sphingomonas sp. IBVSS2] >OSZ64975.1 hypothetical protein CAP40_14225 [Sphingomonas sp. IBVSS2])

HSP 1 Score: 74.3 bits (181), Expect = 5.400e-10
Identity = 48/116 (41.38%), Postives = 61/116 (52.59%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKA 131
            + + +V L  + LF GAALYI+LV HP R  L             D    L +W  SY+RA P+Q   AV+ GV GL   + L K   W  G   +LAN PFTLL ++PVN  L A
Sbjct:    1 MIISLVALLGATLFTGAALYITLVEHPTRLGL-------------DDGPLLQQWQPSYKRALPIQSGLAVIGGVAGLLAGY-LTKDWRWVAGSVALLANWPFTLLVILPVNKRLMA 102          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: KKI19553.1 (hypothetical protein XM50_08570 [Sphingomonas sp. Ag1])

HSP 1 Score: 73.9 bits (180), Expect = 7.100e-10
Identity = 54/131 (41.22%), Postives = 66/131 (50.38%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEA-WAWGGG--LMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            L    L  + LFAGAALYISLV HPAR  LA                 L +W  SY+RA P+Q   AV+ G  GL    ++G   A W W  G  L+LAN PFTLL ++PVN  L A     A     A++
Sbjct:    6 LATAALVLATLFAGAALYISLVEHPARLGLADG-------------PLLAQWQPSYKRALPIQSGLAVLGGAAGL----IVGYYSADWRWFAGSILLLANWPFTLLAIMPVNKRLMAMQVGEAGPGSRAML 119          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_082102919.1 (DUF1772 domain-containing protein [Sphingomonas sp. Ag1])

HSP 1 Score: 73.9 bits (180), Expect = 7.100e-10
Identity = 54/131 (41.22%), Postives = 66/131 (50.38%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEA-WAWGGG--LMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            L    L  + LFAGAALYISLV HPAR  LA                 L +W  SY+RA P+Q   AV+ G  GL    ++G   A W W  G  L+LAN PFTLL ++PVN  L A     A     A++
Sbjct:    4 LATAALVLATLFAGAALYISLVEHPARLGLADG-------------PLLAQWQPSYKRALPIQSGLAVLGGAAGL----IVGYYSADWRWFAGSILLLANWPFTLLAIMPVNKRLMAMQVGEAGPGSRAML 117          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_021236409.1 (DUF1772 domain-containing protein [Sphingobium quisquiliarum] >EQB15014.1 hypothetical protein L288_00340 [Sphingobium quisquiliarum P25])

HSP 1 Score: 73.6 bits (179), Expect = 9.300e-10
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            + + +V L S+ LF GAA YI+LV HPAR  L                  L +W  SY+RA P+Q   AV+ G+ GL   + L K   W  G   +LAN PFTLL + PVN  L A     A     A++
Sbjct:    1 MIISLVALLSATLFTGAAFYITLVEHPARLGLGDG-------------PMLQQWQPSYKRALPIQSGLAVIGGLAGLIAGY-LTKDWLWVAGSVALLANWPFTLLAIFPVNKRLMALNPRLAGFESRAML 116          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_070158186.1 (DUF1772 domain-containing protein [Sphingobium phenoxybenzoativorans])

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9
Identity = 48/114 (42.11%), Postives = 60/114 (52.63%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKA 131
            + I  L  + LF GAA YISLV HPAR  L             D    L +W  SY RA P+Q   A+  GV GL    + G+   +  G  ++LAN PFTLL ++PVNN LKA
Sbjct:    1 MSIAALVCATLFTGAAGYISLVEHPARLQL-------------DDAPLLAQWQPSYSRALPIQSGLAIAGGVAGLAAWHMSGEW-LYVLGSLVLLANWPFTLLAIMPVNNRLKA 100          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: OHC91284.1 (hypothetical protein A2095_05985 [Sphingomonadales bacterium GWF1_63_6])

HSP 1 Score: 72.0 bits (175), Expect = 2.700e-9
Identity = 58/168 (34.52%), Postives = 74/168 (44.05%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGG--LMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSL 183
            L I  L  + LFAGAALYISLV HPAR  LA                 L +W  SY+RA P+Q   A+  GV GL   ++      W W  G  ++LAN PFTL  ++PVN  L A             M    AG E   +     ++  G   L   T  F  W++
Sbjct:    4 LAIAALVFATLFAGAALYISLVEHPARLGLADG-------------PLLAQWQPSYKRALPIQSGLAIAGGVTGLIVGYL---SSDWRWFAGSIVLLANWPFTLFVIMPVNKILMA-------------MQENEAGSESRAMLRQWGKLHNGRSALGAATVMFFVWAM 142          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_057189021.1 (DUF1772 domain-containing protein [Bosea sp. Root483D1] >KRE22048.1 hypothetical protein ASE66_26740 [Bosea sp. Root483D1])

HSP 1 Score: 71.6 bits (174), Expect = 3.500e-9
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 0
Query:   13 GRLALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            G  A  +V L  + LFAGAA+YI +   PAR AL             + ++ L +W +SY RAA +Q   AV+A + G    +   +G  W  G  LMLAN+PFTL+ + PVN+ L A     A     AL+
Sbjct:   14 GASATGLVALILATLFAGAAIYILVAEQPARLAL-------------EDRSLLLQWQESYPRAARMQAGLAVLASLVGTI-AYWRARGRLWLVGATLMLANLPFTLIVIAPVNDALLALGSEQASAASRALI 131          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_037529036.1 (DUF1772 domain-containing protein [Sphingomonas wittichii])

HSP 1 Score: 70.9 bits (172), Expect = 6.000e-9
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGG--LMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            L I  L  + LF GAALYISLV HPAR  LA                 L +W  SY+RA P+Q   AV  G  G+   ++      W W  G  L+LAN PFTL+ ++PVN  L A  +  A     A++
Sbjct:    4 LSIAALVFATLFTGAALYISLVEHPARLRLADG-------------PLLAQWQPSYRRALPMQSGLAVAGGAAGIIVGYL---SADWRWFAGSILLLANWPFTLIFIMPVNKCLMAIPQREAGAGSRAML 117          
The following BLAST results are available for this feature:
BLAST of NO07G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_029936781.11.900e-1032.98DUF1772 domain-containing protein [Sphingomonas sp... [more]
WP_030538554.13.200e-1038.46DUF1772 domain-containing protein [Sphingobium sp.... [more]
WP_086130209.15.400e-1041.38DUF1772 domain-containing protein [Sphingomonas sp... [more]
KKI19553.17.100e-1041.22hypothetical protein XM50_08570 [Sphingomonas sp. ... [more]
WP_082102919.17.100e-1041.22DUF1772 domain-containing protein [Sphingomonas sp... [more]
WP_021236409.19.300e-1037.69DUF1772 domain-containing protein [Sphingobium qui... [more]
WP_070158186.12.100e-942.11DUF1772 domain-containing protein [Sphingobium phe... [more]
OHC91284.12.700e-934.52hypothetical protein A2095_05985 [Sphingomonadales... [more]
WP_057189021.13.500e-937.12DUF1772 domain-containing protein [Bosea sp. Root4... [more]
WP_037529036.16.000e-938.46DUF1772 domain-containing protein [Sphingomonas wi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000734NSK000734Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01400.1NO07G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|329725gene_2461Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g37gene3313Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01400.1NO07G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01400 ID=NO07G01400|Name=NO07G01400|organism=Nannochloropsis oceanica|type=gene|length=693bp
ATGCGTTGGCCGACTTCCGAACAACGCAATACCGGCGGACGCTTGGCACT
CGAGATCGTGACCCTTACGAGCTCCGCACTCTTTGCAGGAGCCGCGCTTT
ACATCTCTTTGGTGGCACACCCCGCACGCTGCGCCCTCGCCTCGGCTCTT
AAGAATACCCTGGAGGCCAAGAAGAGTGACATCAAAGCTGCGCTCTTCGA
ATGGAACGACTCTTACCAACGTGCCGCCCCTCTCCAGATCTTTTATGCTG
TTGTCGCGGGTGTGGGCGGGCTGTGCAATACCTTCGTGCTGGGAAAGGGG
GAGGCTTGGGCGTGGGGAGGGGGTTTGATGCTGGCGAACGTGCCATTTAC
CCTCCTCTGCATGGTGCCTGTGAACAATGAGCTCAAAGCGCGTGCCAGGG
CAGCAGCAGACATGAACAAGACGGCGCTGATGGCTCATCGCACGGCAGGC
ATGGAGGAGCCCGTGGTTGAAGAAGGAGAGGAGGAAGTGGGGAAAGGGGA
GCCAGAGCTGCAACGGACGACAACATGCTTTCGTTCCTGGTCCCTAACCG
GAGGTTCCTTCACGCAAGATCTACTAGAAGTATGGGGAAACTTGCATATG
GTGCGCACCTGGCTCGGCCTGAGTGGTTTCCTTGTCTTGGTTTCCCAACT
CGTGGCCACTGCTCACAGCCGCAAGCGCAACGGCTTGATGTAA
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protein sequence of NO07G01400.1

>NO07G01400.1-protein ID=NO07G01400.1-protein|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MRWPTSEQRNTGGRLALEIVTLTSSALFAGAALYISLVAHPARCALASAL
KNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKG
EAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAG
MEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHM
VRTWLGLSGFLVLVSQLVATAHSRKRNGLM*
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Synonyms
Publications