NO07G01400, NO07G01400 (gene) Nannochloropsis oceanica

Overview
NameNO07G01400
Unique NameNO07G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr7:433595..434287 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:433595..434287 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO07G01400 vs. NCBI_GenBank
Match: EWM27252.1 (Protein of unknown function DUF1772 [Nannochloropsis gaditana])

HSP 1 Score: 232.6 bits (592), Expect = 1.200e-57
Identity = 127/235 (54.04%), Postives = 161/235 (68.51%), Query Frame = 0
Query:    1 MRWPTSEQRNTGGRLALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEA-----KKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHMVRTWLGLSGFLVLVSQLVATAHSRKRNGLM 231
            MRWP  + R+ GGR  LE  T  SSALFAGAALYISLV HPAR  LA++  +  ++     KKS IK+A+ +W +SYQRAAPLQ+FYA+VAGVGG+CNTFVL +  AWAWGGGL+  NVPFTLLC++P+N EL  RA  A    +T   + R    EE  VE  EEEV + +P  +R T C  SWS +G   T+ LL +WG LH VR  LGLSGFLVL + +++ AHSR+ + +M
Sbjct:    1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDRE---EETKVE--EEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVM 230          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_056382413.1 (DUF1772 domain-containing protein [Sphingomonas sp. Root710] >KRB81411.1 hypothetical protein ASE00_15660 [Sphingomonas sp. Root710])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 53/122 (43.44%), Postives = 66/122 (54.10%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAA 137
            +   +V L S+ LFAGAA YISLV HPAR  L             D    L +W  SY+RA P+Q   AV++GV GL   +  G    WA GG  +LAN PFTLL ++PVN  L A +   A
Sbjct:    1 MTFALVALISATLFAGAASYISLVEHPARLVL-------------DDGPLLQQWQPSYRRALPIQSALAVISGVAGLAVAYASGDWR-WAAGGAALLANWPFTLLIIMPVNKRLMAMSPGQA 108          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_066690033.1 (DUF1772 domain-containing protein [Sphingomonas hankookensis] >KZE14644.1 hypothetical protein AVT10_14425 [Sphingomonas hankookensis])

HSP 1 Score: 81.3 bits (199), Expect = 4.400e-12
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   19 IVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGL-MLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            +V L ++ LF GAALYI+LV HPAR +LA              +  L +W  SY+RA P+Q   A+VAG+GGL   +VL  G  WA  GG+ MLAN PFT+  ++P+N  L        D +   L+
Sbjct:    5 LVALLAATLFTGAALYITLVEHPARLSLAE-------------EPMLTQWQQSYRRALPIQSSLALVAGIGGLVAGWVLRDG--WAIAGGVAMLANWPFTVSALLPINRRLSPAIAGRGDAHSHLLL 116          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_037485058.1 (DUF1772 domain-containing protein [Sphingomonas paucimobilis] >EZP70823.1 hypothetical protein BV96_03121 [Sphingomonas paucimobilis])

HSP 1 Score: 80.1 bits (196), Expect = 9.900e-12
Identity = 52/132 (39.39%), Postives = 66/132 (50.00%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAH 147
            + + +V L S+ LF GAA YI+LV HPAR  L                  L +W  SY+RA P+Q   AV+ GV GL   + L K   W  G   +LAN PFTLL + PVN  L A     AD    A++ H
Sbjct:    1 MIISLVALLSATLFTGAAFYITLVEHPARLGLGDG-------------PMLQQWQPSYKRALPIQSGLAVIGGVAGLIAGY-LTKDWLWVAGSVALLANWPFTLLAIFPVNKRLMALNPRLADFESRAMLVH 118          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_107125282.1 (DUF1772 domain-containing protein [Sphingobium sp. AEW4] >PSO11323.1 DUF1772 domain-containing protein [Sphingobium sp. AEW4])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 55/131 (41.98%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEA-WAW--GGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            L I  L  +ALFAGAALYISLV HPAR  LA                 L +W  SY+RA P+Q   AV +G+ GL    ++G   A W W  G  L+LAN PFTL  ++PVN  L A +   A     A++
Sbjct:    4 LSIAALLFAALFAGAALYISLVEHPARVGLADG-------------PLLMQWQPSYKRALPIQSGLAVASGLAGL----IVGYYSADWRWFAGSNLILANWPFTLFIIMPVNKRLMAMSEREAGAGSRAML 117          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_024019368.1 (DUF1772 domain-containing protein [Sphingobium sp. C100] >ETI64243.1 hypothetical protein C100_08485 [Sphingobium sp. C100])

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-11
Identity = 51/130 (39.23%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            + + +V L S+ LF GAA+YISLV HPAR  L             D    L +W  SY+RA P+Q   AV+ GV GL   +   K   W  G   +LAN PFTLL ++PVN  L A     AD+    ++
Sbjct:    1 MIISLVALLSATLFTGAAIYISLVEHPARLGL-------------DDGPLLQQWQPSYKRALPIQSGLAVIGGVAGLLAAY-FTKDWRWVAGSVALLANWPFTLLVILPVNKRLMAMDSHHADLESRRML 116          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_017183300.1 (DUF1772 domain-containing protein [Sphingobium xenophagum])

HSP 1 Score: 78.6 bits (192), Expect = 2.900e-11
Identity = 53/128 (41.41%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            + ++ L S+ LFAGAALYISLV HPAR AL+ +             A+L +W  SY+RA P Q   AV  G+ G+   F L     W  G   MLAN PFTL  + PVN  L A     AD     L+
Sbjct:    4 VSVIALVSATLFAGAALYISLVEHPARLALSDS-------------ASLTQWQPSYKRALPFQSGLAVAGGLSGVI-CFYLTADFRWLAGSIAMLANWPFTLFIIFPVNKRLLAIRPVEADRETRGLL 117          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_100283695.1 (DUF1772 domain-containing protein [Sphingomonas sp. Cra20] >ATY33899.1 DUF1772 domain-containing protein [Sphingomonas sp. Cra20])

HSP 1 Score: 77.4 bits (189), Expect = 6.400e-11
Identity = 52/128 (40.62%), Postives = 65/128 (50.78%), Query Frame = 0
Query:   17 LEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALM 145
            L I  L  + LFAGAALYISLV HPAR  LA                 L +W  SY+RA P+Q   +V+ GV GL   + L     W  G  L+LAN PFTL  ++PVN  L A   + A     A++
Sbjct:    4 LSIAALVFATLFAGAALYISLVEHPARLGLADG-------------PLLAQWQPSYRRALPVQSGLSVLGGVAGLIVAY-LSADWRWLAGSVLLLANWPFTLFLIMPVNKRLMAMPESEAGAESRAML 117          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: WP_090571156.1 (DUF1772 domain-containing protein [Belnapia rosea] >SDE62581.1 protein of unknown function [Belnapia rosea] >SDB74690.1 protein of unknown function [Belnapia rosea])

HSP 1 Score: 77.0 bits (188), Expect = 8.400e-11
Identity = 66/204 (32.35%), Postives = 87/204 (42.65%), Query Frame = 0
Query:   19 IVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGG--LMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHMVRTWLGLSGFLVLVSQLVAT 221
            +V L  + LFAGAALYIS+V HPAR +L  A               L +W  SY+RA P+Q   A++ G  GL   +  G  E W W  G  L+LAN PFT+L ++PVN  L A     A                                                G+ ++DLL  WGNLH VR+ LG +  L+     +AT
Sbjct:    5 LVALVIAVLFAGAALYISIVEHPARMSLEDA-------------PLLAQWQLSYKRALPIQAGLAMLGGAAGLLAWY--GSRE-WQWMAGSLLLLANWPFTMLVIMPVNKRLMAMTPQEA------------------------------------------------GARSRDLLRRWGNLHGVRSVLGSAASLLFACGFLAT 144          
BLAST of NO07G01400 vs. NCBI_GenBank
Match: OJU44292.1 (hypothetical protein BGN99_31695 [Alphaproteobacteria bacterium 65-37])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 65/209 (31.10%), Postives = 90/209 (43.06%), Query Frame = 0
Query:   15 LALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHMVRTWLGLSGFLVLVSQLVATAHS 224
            + L I+ LT++ALF GAA YIS   HPAR  L             D +A L +W  +Y R A +Q   AV+  V GL  T+   + E W  G  +++AN P+T+L ++PVN ELKA                       P+ + GEE                          +  LL+ WG LH  RT LG    L++    V  AH+
Sbjct:    1 MTLGILALTAAALFTGAAFYISFAEHPARSRL-------------DDRAQLQQWGPAYARGAQMQASLAVIGFVLGLA-TWWQTRDELWIVGAIVLVANWPYTMLMIMPVNRELKA----------------------IPLDDAGEE--------------------------SSALLQRWGRLHARRTMLGAVATLLMFWAAVVPAHA 147          
The following BLAST results are available for this feature:
BLAST of NO07G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27252.11.200e-5754.04Protein of unknown function DUF1772 [Nannochlorops... [more]
WP_056382413.11.500e-1243.44DUF1772 domain-containing protein [Sphingomonas sp... [more]
WP_066690033.14.400e-1240.94DUF1772 domain-containing protein [Sphingomonas ha... [more]
WP_037485058.19.900e-1239.39DUF1772 domain-containing protein [Sphingomonas pa... [more]
WP_107125282.11.700e-1141.98DUF1772 domain-containing protein [Sphingobium sp.... [more]
WP_024019368.12.200e-1139.23DUF1772 domain-containing protein [Sphingobium sp.... [more]
WP_017183300.12.900e-1141.41DUF1772 domain-containing protein [Sphingobium xen... [more]
WP_100283695.16.400e-1140.63DUF1772 domain-containing protein [Sphingomonas sp... [more]
WP_090571156.18.400e-1132.35DUF1772 domain-containing protein [Belnapia rosea]... [more]
OJU44292.11.100e-1031.10hypothetical protein BGN99_31695 [Alphaproteobacte... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000734NSK000734Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01400.1NO07G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|329725gene_2461Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g37gene3313Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01400.1NO07G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01400 ID=NO07G01400|Name=NO07G01400|organism=Nannochloropsis oceanica|type=gene|length=693bp
ATGCGTTGGCCGACTTCCGAACAACGCAATACCGGCGGACGCTTGGCACT
CGAGATCGTGACCCTTACGAGCTCCGCACTCTTTGCAGGAGCCGCGCTTT
ACATCTCTTTGGTGGCACACCCCGCACGCTGCGCCCTCGCCTCGGCTCTT
AAGAATACCCTGGAGGCCAAGAAGAGTGACATCAAAGCTGCGCTCTTCGA
ATGGAACGACTCTTACCAACGTGCCGCCCCTCTCCAGATCTTTTATGCTG
TTGTCGCGGGTGTGGGCGGGCTGTGCAATACCTTCGTGCTGGGAAAGGGG
GAGGCTTGGGCGTGGGGAGGGGGTTTGATGCTGGCGAACGTGCCATTTAC
CCTCCTCTGCATGGTGCCTGTGAACAATGAGCTCAAAGCGCGTGCCAGGG
CAGCAGCAGACATGAACAAGACGGCGCTGATGGCTCATCGCACGGCAGGC
ATGGAGGAGCCCGTGGTTGAAGAAGGAGAGGAGGAAGTGGGGAAAGGGGA
GCCAGAGCTGCAACGGACGACAACATGCTTTCGTTCCTGGTCCCTAACCG
GAGGTTCCTTCACGCAAGATCTACTAGAAGTATGGGGAAACTTGCATATG
GTGCGCACCTGGCTCGGCCTGAGTGGTTTCCTTGTCTTGGTTTCCCAACT
CGTGGCCACTGCTCACAGCCGCAAGCGCAACGGCTTGATGTAA
back to top

protein sequence of NO07G01400.1

>NO07G01400.1-protein ID=NO07G01400.1-protein|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MRWPTSEQRNTGGRLALEIVTLTSSALFAGAALYISLVAHPARCALASAL
KNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKG
EAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAG
MEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHM
VRTWLGLSGFLVLVSQLVATAHSRKRNGLM*
back to top
Synonyms
Publications