NO07G01360, NO07G01360 (gene) Nannochloropsis oceanica

Overview
NameNO07G01360
Unique NameNO07G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr7:427304..428703 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:427304..428703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01360 vs. NCBI_GenBank
Match: EWM27262.1 (hypothetical protein Naga_100038g25 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 6.500e-21
Identity = 114/373 (30.56%), Postives = 141/373 (37.80%), Query Frame = 0 
Query:    4 QDGSIPATESAFTQALHQPAVVKDQFDLLYASLC---QEGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQRRAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATIS-SAGRRKAXXXXXXXXXXXTKATAGAKGRCSGEGELGNFTHSVGPLRGEWLQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTFFSPRPRFLGLSPESXXXXXXXXXXXXXXXCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGMNKGLPSAALFDVLKKSIFSPKA 373
            QD   PA E+AFTQAL QP VVKDQFDLLYAS+     +  N                                                                       RA +SP  P YDEE+LR  WKPLAPA DD++D+S +IS   G                +A    KG    E ++     S G   GEWLQ+R A+VSER S+VPK  +T         + S  TA  TP+                                       +FFSPRPRFLGLSPE                  ++   G   +      + SK  L G T ++S      K +P +ALF VLKKSIFS KA
Sbjct:    2 QDLDSPAAENAFTQALQQPNVVKDQFDLLYASIFGRKDDSGNQITEDDIDGAIVLSSQNHQGKVSSKYLEDNRWMIDRHDEEEEVTRLKTPVAPVSKKRRRASFVDFEKVEACRALISPRPPNYDEEKLRSVWKPLAPAEDDFLDVSLSISRQRGPNTGYKVAEEKAMKSKQAVRCRKGEGGEESDV-----SCG---GEWLQSRTALVSERNSIVPKHVNT---------STSSDTAHVTPT---MPCKARGAAPLTAGGTRRLSSGSGSSTGSHQSRSMGSFFSPRPRFLGLSPEG----AAYGTEGRGGSVMEKKSLGREDSGGKSASAVSKRCLPGCTPAAS--YTQEKPMPPSALFSVLKKSIFSHKA 348
The following BLAST results are available for this feature:
BLAST of NO07G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27262.16.500e-2130.56hypothetical protein Naga_100038g25 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL097nonsL097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR137ngnoR137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000747NSK000747Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01360.1NO07G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580451gene_2457Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g25gene3302Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01360.1NO07G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01360 ID=NO07G01360|Name=NO07G01360|organism=Nannochloropsis oceanica|type=gene|length=1400bp
GTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCG
CCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCCCCCACGCCTCC
GACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCACCATGGTGACA
CAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCA
TCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATGCCTCGTTAT
GCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCC
TCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTC
CATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACCAAAGAGCAT
CAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCC
AGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCTATCGCCTCT
GCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAG
CCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATCTCTAGTGCG
GGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGAC
CAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGG
GCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACC
CGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAG
CACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCCCGCGGACTG
CCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGC
ATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAA
TACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTTTTTCGCCAC
GACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGA
CTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGG
GACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCC
TCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGG
TTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTATATTTTCACC
GAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACATTAGGAAAAAG
GAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGT
AAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTCAAAAATAGTCA
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protein sequence of NO07G01360.1

>NO07G01360.1-protein ID=NO07G01360.1-protein|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MVTQDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCS
SSPSVCPPRQRHRRRAASVSINAEESEDEEDKHQRASATAPVKATATKKR
QRASDTDVDKPQRRAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATI
SSAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEW
LQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSS
RSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGN
SGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGM
NKGLPSAALFDVLKKSIFSPKAH*
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Synonyms
Publications