NO07G01310, NO07G01310 (gene) Nannochloropsis oceanica

Overview
NameNO07G01310
Unique NameNO07G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1570
Alignment locationchr7:415351..416920 -

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Properties
Property NameValue
DescriptionAtp synthase subunit delta
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:415351..416920 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0009058biosynthetic process
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036771ATPsynth_dsu/esu_N
IPR001469ATPase_F1-cplx_dsu/esu
IPR020546ATPase_F1-cplx_dsu/esu_N
Homology
BLAST of NO07G01310 vs. NCBI_GenBank
Match: GBG25770.1 (ATP synthase subunit delta, mitochondrial [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 117.5 bits (293), Expect = 4.600e-23
Identity = 66/174 (37.93%), Postives = 103/174 (59.20%), Query Frame = 0
Query:   17 LAARGIFKAVARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAAS--IYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            +AAR +   +  R +H     + T    A+P A  +  +N +L +A+  +   +PV  V +PG+ GE+GV   H+PV++ELK GVVQ+    G APE +FVSGG A  H +S  D++  E   LD++D     K+Y EA +  + A EGS+E+  AQIEV+V + +  ALG+++
Sbjct:   61 VAARRVGAKLGARALHA----SPTVRMMAEPEAAGSTSVNLTLASATKPVKSKEPVFLVNVPGMTGEFGVAAEHAPVLSELKPGVVQVTKAEGDAPESFFVSGGLASVHEDSSMDVSAAEIFSLDELDGSVAQKLYTEAKRKLDGAAEGSQEQAVAQIEVDVYEGVCVALGISV 230          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_008864102.1 (hypothetical protein H310_02387, partial [Aphanomyces invadans] >ETW08009.1 hypothetical protein H310_02387, partial [Aphanomyces invadans])

HSP 1 Score: 115.9 bits (289), Expect = 1.300e-22
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 0
Query:   28 RRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVA 188
            RR +HTT + A+   AA   AA   + LN S P  + Y+   V  V +PG+ GEYG+T  H+P+I++LK GV+ +  E  +  +K+F +GGFA THANS TDIA VE  K++DID         +  +    A +G+ E+VEAQI  E   ++  AL  A
Sbjct:   27 RRSLHTTAIRAAADNAATG-AAATKVTLNLSTPHQAFYKGVQVDLVQVPGMIGEYGITAGHTPIISQLKPGVIAVHEEREKVVKKFFTAGGFAFTHANSTTDIAAVELIKVEDIDAAAAEAGVQKYKQALEQAADGTPEKVEAQIAYETHVAMVAALASA 185          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_009824242.1 (hypothetical protein H257_02353 [Aphanomyces astaci] >ETV85770.1 hypothetical protein H257_02353 [Aphanomyces astaci])

HSP 1 Score: 115.5 bits (288), Expect = 1.800e-22
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 0
Query:   28 RRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVA 188
            RR +HTT + A+ + A +  A    + LN S P  + Y+   V  V +PGL GEYGVT  H+P+I++LK GV+ +  E  +  +K+F +GGFA THA+S TDIA VE  K++DID         +  +    A +G+ E+VEAQI  E   +L  AL  A
Sbjct:    7 RRSIHTTALRAAAENAPSS-AVATKVTLNLSTPHQAFYKGVQVDLVQVPGLVGEYGVTAGHTPIISQLKPGVIAVHEERDKVVKKFFTAGGFAFTHADSTTDIAAVELIKVEDIDASAAEAGVQKYKQALEQAADGTPEKVEAQIAYETHLALVAALASA 165          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: KUF95179.1 (Flavohemoprotein [Phytophthora nicotianae])

HSP 1 Score: 115.5 bits (288), Expect = 1.800e-22
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAA--GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ML+A   F   A R +HT+  L++   AAAD AA     + LN + P  + Y+   V  V IPG+ GEYGVT  H+PV+++LK GV+++  E  +    +F +GGFALTHANSVTDIA VE  K++DID +       +      +APEGS+E++ AQI V+   ++  AL
Sbjct:    1 MLSATSRF---AARTLHTSSRLSA---AAADQAAATATKVTLNLTTPYQAFYKGAEVDLVQIPGVIGEYGVTAGHTPVLSQLKPGVIKVHVEREKDVHSFFTAGGFALTHANSVTDIACVELVKVEDIDPEAAQAGLTKYQAQLASAPEGSEEKLNAQIGVDTHAAMVAAL 165          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_008915127.1 (hypothetical protein PPTG_18704 [Phytophthora parasitica INRA-310] >ETI31034.1 hypothetical protein F443_21952 [Phytophthora parasitica P1569] >ETK71416.1 hypothetical protein L915_21347 [Phytophthora parasitica] >ETL24855.1 hypothetical protein L916_21218 [Phytophthora parasitica] >ETL78072.1 hypothetical protein L917_21072 [Phytophthora parasitica] >ETM31336.1 hypothetical protein L914_21086 [Phytophthora parasitica] >ETM99631.1 hypothetical protein PPTG_18704 [Phytophthora parasitica INRA-310] >ETO59737.1 hypothetical protein F444_21971 [Phytophthora parasitica P1976] >ETP00830.1 hypothetical protein F441_21837 [Phytophthora parasitica CJ01A1] >ETP28976.1 hypothetical protein F442_21815 [Phytophthora parasitica P10297] >KUF76479.1 ATP synthase subunit delta' [Phytophthora nicotianae])

HSP 1 Score: 115.2 bits (287), Expect = 2.300e-22
Identity = 71/171 (41.52%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAA--GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ML+A   F   A R +HT+  L++   AAAD AA     + LN + P  + Y+   V  V IPG+ GEYGVT  H+PV+++LK GV+++  E  +    +F +GGFALTHANSVTDIA VE  K++DID +       +      +APEGS+E++ AQI V+   ++  A+
Sbjct:    1 MLSATSRF---AARALHTSSRLSA---AAADQAAATATKVTLNLTTPYQAFYKGAEVDLVQIPGVIGEYGVTAGHTPVLSQLKPGVIKVHVEREKDVHSFFTAGGFALTHANSVTDIACVELVKVEDIDPEAAQAGLTKYQAQLASAPEGSEEKLNAQIGVDTHAAMVAAV 165          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: OQS07925.1 (ATP synthase subunit delta' [Thraustotheca clavata])

HSP 1 Score: 114.8 bits (286), Expect = 3.000e-22
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 0
Query:   28 RRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            RR +H+T + A+ +  +   AA   + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +K+F +GGFA THA+SVTDIA VE  K++DID         +  +  + A  GS ERVEAQI  E   ++  AL
Sbjct:    7 RRSIHSTALRAAAEQTSG--AAATKVTLNLNTPHQSFYKKTEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQATPGSVERVEAQIAYETHVAMVAAL 161          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: OWZ24159.1 (ATP synthase, delta subunit [Phytophthora megakarya])

HSP 1 Score: 114.4 bits (285), Expect = 3.900e-22
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAA--GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ML+A   F   A R +HT+  L++   +AAD AA     + LN + P  + Y++  V  V IPG+ GEYGVT  H+PV+++LK GV+++  E  +    +F +GGFALTHANSVTDIA VE  K++DID +       +      +APEGS+E++ AQI V+   ++  A+
Sbjct:    1 MLSATSRF---AARALHTSSRLSA---SAADQAAATATKVTLNLTTPYQAFYKDAEVDLVQIPGVIGEYGVTAGHTPVLSQLKPGVIKVHVEREKDVHSFFTAGGFALTHANSVTDIACVELVKVEDIDPEAAQAGLTKYQAQLASAPEGSEEKLNAQIGVDTHAAMVAAV 165          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: GAY02510.1 (ATP synthase subunit delta' putative [Pythium insidiosum])

HSP 1 Score: 114.0 bits (284), Expect = 5.100e-22
Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = 0
Query:   29 RGVHTT-RVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            R +HTT R +AS    AA  A    + LN + P  + ++N  V  V IPG+ GEYGVT  H+P+I++LK GVV++  E  +  + +F +GGFALTHA+S TDIA VE  KL+D+D         +      AAPEGS E+ EAQI ++V ++L  AL
Sbjct:   10 RSLHTTARRMASDASGAA--ATATKVTLNLTSPYQAFFKNAQVDLVQIPGVDGEYGVTAGHTPIISQLKPGVVKVHVEREKDVQSFFTAGGFALTHADSTTDIACVELVKLEDVDAAAAEAGLNKYKAAVAAAPEGSAEKAEAQIGLDVHQALVSAL 164          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: EJK46633.1 (hypothetical protein THAOC_34688, partial [Thalassiosira oceanica])

HSP 1 Score: 112.8 bits (281), Expect = 1.100e-21
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 0
Query:   55 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVALA 190
            LNF+LP  +++ +  V+SVV+PG  GEY VT +H P++AELKAG++ + H  G+  EKYFV GGF+LTH  S TDI   EA K+DD+D   +   Y  A                A IEVEV +++ GALG++LA
Sbjct:   89 LNFNLPQQTLFDSTEVSSVVVPGAMGEYEVTADHVPIVAELKAGMLTVKHGGGE-EEKYFVPGGFSLTHEGSTTDIVCPEAVKVDDLDVSAVTANYEAAXXXXXXXXXXXXXXXXAMIEVEVNRAMGGALGLSLA 222          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: CCI41129.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 110.9 bits (276), Expect = 4.300e-21
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 0
Query:   24 KAVARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVA 188
            +A+ +R  H   V      A+   +    + LN S P   I++   V  + IPG  GEYGVT  H+P+I+++K G++++  E  +  + +F +GGFA THA+SVTDIA VE  KLDDID+D      ++       A +GS E+++AQI +E  ++LA AL  A
Sbjct:    7 RAIVKRAFHNA-VSCRAAEASTTTSTPQKVTLNLSTPYQCIFKETKVDLIQIPGAVGEYGVTAGHTPIISQMKPGLIKVHLEREKDVQTFFTAGGFAFTHADSVTDIACVELVKLDDIDRDAAEAGLSKYKSIVATAADGSAEKIDAQIGLETHQALAAALAAA 169          
The following BLAST results are available for this feature:
BLAST of NO07G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GBG25770.14.600e-2337.93ATP synthase subunit delta, mitochondrial [Auranti... [more]
XP_008864102.11.300e-2240.63hypothetical protein H310_02387, partial [Aphanomy... [more]
XP_009824242.11.800e-2240.63hypothetical protein H257_02353 [Aphanomyces astac... [more]
KUF95179.11.800e-2242.11Flavohemoprotein [Phytophthora nicotianae][more]
XP_008915127.12.300e-2241.52hypothetical protein PPTG_18704 [Phytophthora para... [more]
OQS07925.13.000e-2241.40ATP synthase subunit delta' [Thraustotheca clavata... [more]
OWZ24159.13.900e-2240.94ATP synthase, delta subunit [Phytophthora megakary... [more]
GAY02510.15.100e-2243.95ATP synthase subunit delta' putative [Pythium insi... [more]
EJK46633.11.100e-2145.19hypothetical protein THAOC_34688, partial [Thalass... [more]
CCI41129.14.300e-2137.80unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL097nonsL097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR137ngnoR137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000742NSK000742Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01310.1NO07G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580422gene_2452Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g29gene3306Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01310.1NO07G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01310 ID=NO07G01310|Name=NO07G01310|organism=Nannochloropsis oceanica|type=gene|length=1570bp
CACAAGCACAAGCCGTCCTTGAGTTGGATTAACCTACGCCAGCCGGACAG
TGTCCATATCCAAATCTAAGTCCGCAGAGCCACCCTATGCAGGGTGTGAG
ATTGCAGGCAGGAGGACGGGCGCTAGCTCACTACCCCGCACGCTCTGTGT
CCTCCACACACCCTCCGTCATCCAGCTCTCCCTTGTTACTTGTTCGCATC
TGTCACATCACTCATGCGTCTTTACACGACCACATCCCCACATAATCACA
GCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGT
GGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCgtaagtagatagg
gcggctggggaggagtgatatgatgcgggcaatttacaggcaagactgca
tagttgttatggacgctacatacttggtctagctaaccatcgcctcctat
caatacatttccaatgacagCCGCGGCTGCGGACCCGGCCGCCGGCGACA
ACCTGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAACAAG
CCTGTGGCATCTGTCGTCATCCCGgtacgtgcttggctttgttatatgct
aaggttggggacatgctacccatattgatatttttttacaatttatggct
gggaaaggttatgagtgaaaggccttcatgggtacacatcactgaggatg
gtcggaggcggaggcattttcgggggcaagccgtttctgcgcttggaacg
tattccgtagaagggcgcgataatcaaactggttgaaaaaagtaaaattt
acaatcttatttttcatcgcctctttcttaaatacagGGCCTGGCGGGCG
AGTACGGCGTGACAAAGAACCACTCCCCCGTCATTGCCGAGCTTAAAGCG
GGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTT
TGTCAGCGGAGGCTTCGCCCTCACGCACGCCAACTCCGTGACGgtaagtc
atacgagagtgcggtttgatagttgttgccgctgctgcggcggtggcaac
gactgctttgtctgattcgtgacatggaaaggaaaagggtatcctcggat
cggccctatcatttacgcactccgatgcacattcgcgtctcaatcccatc
ttcaacgacagGATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATC
GACCAGGACGAGATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAA
TGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAG
AGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGA
GCGAGGGAAGGAGGGATTGAAGGAGAGGGAGGAGGGAGGAGTGGGATGAT
ATAATAGTGAGGAGGAGCAAAAGGTAGTTCATTTTTTTGGGTGTCGGATG
CGTATATTGTGTTGCTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGGATAT
TGCTGGAGGAAAAAAGGAAGAAAAAGAAGAAAAATGAAGATGAAAAAACA
AGCGAAAAGAGAGGTAGAGA
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protein sequence of NO07G01310.1

>NO07G01310.1-protein ID=NO07G01310.1-protein|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MRLYTTTSPHNHSAKMLAARGIFKAVARRGVHTTRVLASTKPAAADPAAG
DNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVV
QIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIY
AEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVALA*
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Synonyms
Publications