NO07G01310, NO07G01310 (gene) Nannochloropsis oceanica

Overview
NameNO07G01310
Unique NameNO07G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1570
Alignment locationchr7:415351..416920 -

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Properties
Property NameValue
DescriptionAtp synthase subunit delta
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:415351..416920 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0009058biosynthetic process
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036771ATPsynth_dsu/esu_N
IPR001469ATPase_F1-cplx_dsu/esu
IPR020546ATPase_F1-cplx_dsu/esu_N
Homology
BLAST of NO07G01310 vs. NCBI_GenBank
Match: EWM27238.1 (atp synthase subunit delta [Nannochloropsis gaditana])

HSP 1 Score: 297.0 bits (759), Expect = 4.200e-77
Identity = 155/173 (89.60%), Postives = 165/173 (95.38%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            ML ARGIF+  ARRGVHTTR+LAST PAAAD ++GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHE GQAPEK+FVSGGFALTHANSVTDIAVVEAAKL+DID +E+PKIYAEAMKD+NAA EGSKE+VEAQIEVEVAKSLAGALGVAL
Sbjct:    1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: CBJ32297.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 157.5 bits (397), Expect = 4.000e-35
Identity = 85/169 (50.30%), Postives = 111/169 (65.68%), Query Frame = 0
Query:   30 GVHTTRVLASTKPA---------AADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVALA 190
            GV   RV  + +PA         A  PA    + LNF LP  +IY++K V  V+IPG AGEYGVT  HSP++AELK GVVQ+VHE GQ PE +FVS GFALTH  SVTDI  +EA ++++ID+  +   Y  A ++ +AA EGS+E  EAQ+ VE  K++A A+GV LA
Sbjct:    3 GVAARRVAGAARPALRTARCFSTAEAPAV---MKLNFCLPHETIYKDKDVDQVIIPGSAGEYGVTAGHSPIVAELKPGVVQVVHEAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLA 168          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: GAX25764.1 (F-type H+-transporting ATPase subunit delta [Fistulifera solaris])

HSP 1 Score: 145.2 bits (365), Expect = 2.100e-31
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 0
Query:   55 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQA-PEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            LNF LP  ++Y+   V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEKYFV+GG+ALTH +S TD+   EA KLDDID  E+ K Y  A   F++A  GS E+ EAQIE+E+ K +  A+GV+L
Sbjct:   28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSAAAGSIEQAEAQIEMEITKEMGMAIGVSL 162          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: GAX15372.1 (F-type H+-transporting ATPase subunit delta [Fistulifera solaris])

HSP 1 Score: 145.2 bits (365), Expect = 2.100e-31
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 0
Query:   55 LNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQA-PEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            LNF LP  ++Y+   V SV++PG+ GEYG+T NH P +++LK GVV+I+HE G A PEKYFV+GG+ALTH +S TD+   EA KLDDID  E+ K Y  A   F++A  GS E+ EAQIE+E+ K +  A+GV+L
Sbjct:   28 LNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSATAGSIEQAEAQIEMEITKEMGMAIGVSL 162          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: OEU20739.1 (epsilon subunit of F1F0-ATP synthase N-terminal domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 131.3 bits (329), Expect = 3.100e-27
Identity = 73/169 (43.20%), Postives = 105/169 (62.13%), Query Frame = 0
Query:   26 VARRGVHTTRVLASTKPAAA------DPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            VA++ +  T VL +++ AAA        AA  ++ LNFS+P  SIY    V  V+IPG+ GEYGVT NH P +A++K G++ ++ +  ++ EKYFV+GG+A+THANSVTD+  VEA K+DD+D   +   Y  A            E  EAQI++EV K++  ALGV L
Sbjct:    8 VAKKVLSRTSVLGASRAAAARTFSSESEAAASSVSLNFSVPYESIYNGASVEQVIIPGVEGEYGVTANHVPYVAQMKPGILTVMFDSSES-EKYFVAGGYAVTHANSVTDVVCVEAVKVDDLDVSVVSANYEAAKSAXXXXXXXXXEEAEAQIDMEVNKTMGAALGVTL 175          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: OQR92237.1 (ATP synthase subunit delta' [Achlya hypogyna])

HSP 1 Score: 119.8 bits (299), Expect = 9.300e-24
Identity = 68/157 (43.31%), Postives = 95/157 (60.51%), Query Frame = 0
Query:   28 RRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            RR +H+T V A+ + A+A  A    + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +K+F +GGFA THA+SVTDIA VE  K++DID        A+     + A +GS ERVEAQI  E   ++  AL
Sbjct:    7 RRSIHSTAVRAAAENASA--AGATKVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIVVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVAKYKSLMDQAAQGSVERVEAQIAYETHVAMVAAL 161          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_009537353.1 (hypothetical protein PHYSODRAFT_288955 [Phytophthora sojae] >EGZ07787.1 hypothetical protein PHYSODRAFT_288955 [Phytophthora sojae])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAA--GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ML+A   F   A R +HT+  L++   AAAD AA     + LN + P  + Y+N  V  V IPG+ GEYGVT  H+PV+A+LK GV+++  E  +  + +F +GGFALTHANSVTDIA VE  K++DID +       +      +APEGS+E++ AQI V+   ++  A+
Sbjct:    1 MLSATSRF---AARALHTSSRLSA---AAADQAAATATKVTLNLTTPYQAFYKNAEVDLVQIPGVIGEYGVTAGHTPVLAQLKPGVIKVHVEREKDVQSFFTAGGFALTHANSVTDIACVELVKVEDIDPEAAQAGLTKYQAQLASAPEGSEEKLNAQIGVDTHAAMVAAV 165          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_012195659.1 (ATP synthase F1 [Saprolegnia parasitica CBS 223.65] >KDO33613.1 ATP synthase F1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.0 bits (297), Expect = 1.600e-23
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 0
Query:   27 ARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ARR +H+T + A+ + A+A  A    + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +K+F +GGFA THA+SVTDIA VE  K++DID         +  +  + A +GS ERVEAQI  E   ++  AL
Sbjct:    6 ARRSIHSTALRAAAENASA--AGATKVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIVVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_008615983.1 (hypothetical protein SDRG_11712 [Saprolegnia diclina VS20] >EQC30657.1 hypothetical protein SDRG_11712 [Saprolegnia diclina VS20])

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-23
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 0
Query:   27 ARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ARR +H+T + A+ + A+A  A    + LN + P  S Y+   V  V IPGL GEYG+T  H+P+I++LK GV+ +  E  +  +K+F +GGFA THA+SVTDIA VE  K++DID         +  +  + A +GS ERVEAQI  E   ++  AL
Sbjct:    6 ARRSIHSTALRAAAENASA--AGATKVTLNLNTPHQSFYKKAEVDLVQIPGLVGEYGITARHTPIISQLKPGVIIVHEERDKVVKKFFTAGGFAFTHADSVTDIACVELVKVEDIDASAAEAGVTKYKQLMDQAAQGSVERVEAQIAYETHVAMVAAL 161          
BLAST of NO07G01310 vs. NCBI_GenBank
Match: XP_002904018.1 (ATP synthase subunit delta', putative [Phytophthora infestans T30-4] >EEY54196.1 ATP synthase subunit delta', putative [Phytophthora infestans T30-4])

HSP 1 Score: 117.5 bits (293), Expect = 4.600e-23
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAA--GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGAL 185
            ML+A   F   A R +HT+  L++   AA D AA     + LN + P  + Y+   V  V IPG+ GEYGVT  H+PV+A+LK GV+Q+  E  +  + +F +GGFALTHANSVTDIA VE  K++DID +       +      +APEGS+E++ AQI V+   ++  A+
Sbjct:    1 MLSATSRF---AARALHTSSRLSA---AATDQAAATATKVTLNLTTPYQAFYKGAEVDLVQIPGVIGEYGVTAGHTPVLAQLKPGVIQVHVEREKDVQSFFTAGGFALTHANSVTDIACVELVKVEDIDPEAAQAGLTKYQSQLASAPEGSEEKLNAQIGVDTHAAMVAAV 165          
The following BLAST results are available for this feature:
BLAST of NO07G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27238.14.200e-7789.60atp synthase subunit delta [Nannochloropsis gadita... [more]
CBJ32297.14.000e-3550.30conserved unknown protein [Ectocarpus siliculosus][more]
GAX25764.12.100e-3153.33F-type H+-transporting ATPase subunit delta [Fistu... [more]
GAX15372.12.100e-3153.33F-type H+-transporting ATPase subunit delta [Fistu... [more]
OEU20739.13.100e-2743.20epsilon subunit of F1F0-ATP synthase N-terminal do... [more]
OQR92237.19.300e-2443.31ATP synthase subunit delta' [Achlya hypogyna][more]
XP_009537353.11.200e-2342.69hypothetical protein PHYSODRAFT_288955 [Phytophtho... [more]
XP_012195659.11.600e-2342.41ATP synthase F1 [Saprolegnia parasitica CBS 223.65... [more]
XP_008615983.12.100e-2342.41hypothetical protein SDRG_11712 [Saprolegnia dicli... [more]
XP_002904018.14.600e-2342.11ATP synthase subunit delta', putative [Phytophthor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL097nonsL097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR137ngnoR137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000742NSK000742Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01310.1NO07G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580422gene_2452Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g29gene3306Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01310.1NO07G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01310 ID=NO07G01310|Name=NO07G01310|organism=Nannochloropsis oceanica|type=gene|length=1570bp
CACAAGCACAAGCCGTCCTTGAGTTGGATTAACCTACGCCAGCCGGACAG
TGTCCATATCCAAATCTAAGTCCGCAGAGCCACCCTATGCAGGGTGTGAG
ATTGCAGGCAGGAGGACGGGCGCTAGCTCACTACCCCGCACGCTCTGTGT
CCTCCACACACCCTCCGTCATCCAGCTCTCCCTTGTTACTTGTTCGCATC
TGTCACATCACTCATGCGTCTTTACACGACCACATCCCCACATAATCACA
GCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGT
GGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCgtaagtagatagg
gcggctggggaggagtgatatgatgcgggcaatttacaggcaagactgca
tagttgttatggacgctacatacttggtctagctaaccatcgcctcctat
caatacatttccaatgacagCCGCGGCTGCGGACCCGGCCGCCGGCGACA
ACCTGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAACAAG
CCTGTGGCATCTGTCGTCATCCCGgtacgtgcttggctttgttatatgct
aaggttggggacatgctacccatattgatatttttttacaatttatggct
gggaaaggttatgagtgaaaggccttcatgggtacacatcactgaggatg
gtcggaggcggaggcattttcgggggcaagccgtttctgcgcttggaacg
tattccgtagaagggcgcgataatcaaactggttgaaaaaagtaaaattt
acaatcttatttttcatcgcctctttcttaaatacagGGCCTGGCGGGCG
AGTACGGCGTGACAAAGAACCACTCCCCCGTCATTGCCGAGCTTAAAGCG
GGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTT
TGTCAGCGGAGGCTTCGCCCTCACGCACGCCAACTCCGTGACGgtaagtc
atacgagagtgcggtttgatagttgttgccgctgctgcggcggtggcaac
gactgctttgtctgattcgtgacatggaaaggaaaagggtatcctcggat
cggccctatcatttacgcactccgatgcacattcgcgtctcaatcccatc
ttcaacgacagGATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATC
GACCAGGACGAGATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAA
TGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAG
AGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGA
GCGAGGGAAGGAGGGATTGAAGGAGAGGGAGGAGGGAGGAGTGGGATGAT
ATAATAGTGAGGAGGAGCAAAAGGTAGTTCATTTTTTTGGGTGTCGGATG
CGTATATTGTGTTGCTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGGATAT
TGCTGGAGGAAAAAAGGAAGAAAAAGAAGAAAAATGAAGATGAAAAAACA
AGCGAAAAGAGAGGTAGAGA
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protein sequence of NO07G01310.1

>NO07G01310.1-protein ID=NO07G01310.1-protein|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MRLYTTTSPHNHSAKMLAARGIFKAVARRGVHTTRVLASTKPAAADPAAG
DNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVV
QIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIY
AEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVALA*
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Synonyms
Publications