NO07G01190, NO07G01190 (gene) Nannochloropsis oceanica

Overview
NameNO07G01190
Unique NameNO07G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr7:383974..384450 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:383974..384450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01190 vs. NCBI_GenBank
Match: EWM27253.1 (hypothetical protein Naga_100038g21 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0 
Query:   69 FHDTVGMAFSRMFDACTNVVQTAETHTMQALQHMNQQLASATREKKEVEGQLQALLRVLEENKRAVLVIY 139
            FH  VGMAFS MFDA  +VV  AETH  + L+ +++ + SA   K++V+ +L+ +LRVLEENKRA+ VIY
Sbjct:  107 FHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEGKRKVDAELETMLRVLEENKRAIHVIY 176
The following BLAST results are available for this feature:
BLAST of NO07G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27253.11.100e-952.86hypothetical protein Naga_100038g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01190.1NO07G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01190.1NO07G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01190 ID=NO07G01190|Name=NO07G01190|organism=Nannochloropsis oceanica|type=gene|length=477bp
ATGTTGAATGGCCACATCACCCACCAGCAGGAGCAGCGGCGGGAGCGGCG
ACAGCAGGAGCAGCGGCGGGAGCGGCGGCAGCAAGAGCAGCAAGAGCACT
TTCACACCGTGGCATACGCAGGGGAAAACGCCAACAAAAGAGGAGAAGGA
GGAGGAGGAGGGATGATGCAGGTAGGGGAGGAAGAAGGGGGAGCTTCAGC
GGCCTTCCATGACACAGTTGGCATGGCCTTTAGCCGTATGTTCGATGCAT
GCACGAATGTGGTGCAGACAGCGGAGACACACACAATGCAAGCCTTACAA
CACATGAACCAGCAGCTCGCGTCGGCGACGAGGGAGAAGAAGGAGGTGGA
GGGGCAGCTGCAGGCGCTCCTCCGGGTATTGGAGGAGAATAAGAGGGCCG
TCCTGGTGATCTATGAGGGGATAGGGGGGGGTTTGGAGGAAGTAAATGAG
AGAGGAAGGGAAGGGGACTTGGAGTAA
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protein sequence of NO07G01190.1

>NO07G01190.1-protein ID=NO07G01190.1-protein|Name=NO07G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MLNGHITHQQEQRRERRQQEQRRERRQQEQQEHFHTVAYAGENANKRGEG
GGGGMMQVGEEEGGASAAFHDTVGMAFSRMFDACTNVVQTAETHTMQALQ
HMNQQLASATREKKEVEGQLQALLRVLEENKRAVLVIYEGIGGGLEEVNE
RGREGDLE*
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Synonyms
Publications