NO07G01090, NO07G01090 (gene) Nannochloropsis oceanica

Overview
NameNO07G01090
Unique NameNO07G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4521
Alignment locationchr7:355587..360107 -

Link to JBrowse

Properties
Property NameValue
DescriptionDead-box atp-dependent rna helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:355587..360107 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO07G01090 vs. NCBI_GenBank
Match: EWM27261.1 (dead-box atp-dependent rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 779.2 bits (2011), Expect = 8.400e-222
Identity = 385/400 (96.25%), Postives = 392/400 (98.00%), Query Frame = 0
Query:  168 VWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEESGNVVPAALRNM-GGGGYGRGRY 567
            V GHGIPKPVFTFEEASMPEYVLQEVMKQGFD PTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLE GDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDL+RGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQS+ARDFLKDPYQVTVGSLDL+ANKDIKQEVMVCEDRDKYGLLLRALKENNTGG++LVFVETKRGCDQLQRSL MDGF AVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYA+SFVTQKHARISREL+KILEESGN VPAALR M GGGGYGRGRY
Sbjct:   90 VQGHGIPKPVFTFEEASMPEYVLQEVMKQGFDRPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLESGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLKRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSLARDFLKDPYQVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAALRGMGGGGGYGRGRY 489          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: CBJ28373.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 610.1 bits (1572), Expect = 6.800e-171
Identity = 300/386 (77.72%), Postives = 333/386 (86.27%), Query Frame = 0
Query:  168 VWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEESGNVVPAAL 554
            + G GIPKP  TFEEASMPEYVL+EVMKQGF APTPIQSQGWPMALLGRDM+GISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLV+APTRELA+QIK+ECDKFGRSS IKNTCVYGGVPKR QV DL RG+EIV+ATPGRLID LESG TNLRRVTYLVLDEADRMLDMGFEPQ+R IVSQIRPDRQTLMWSATWPKEVQ++ARDFL   YQVTVGSL+L+ANKDIKQ +   ED +KY  L + L+++   G++LVFVETK+GCD L RSL  DG+QA  IHGDK+Q++RD+ L+ FK G   +LVATDVAARGLDVKDIQMV NFDFPNNMEDYIHR+GR GRAGAKG A+SF   K++R  REL KIL ES N VP  L
Sbjct:  116 IQGEGIPKPAMTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVNDLNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRELIKILTESENHVPPEL 501          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: CBN73878.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 599.4 bits (1544), Expect = 1.200e-167
Identity = 292/378 (77.25%), Postives = 332/378 (87.83%), Query Frame = 0
Query:  168 VWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEES 546
            + G GIPKPV TFEEASMPEYVL+EV+KQGF  PTPIQSQGWPMALLGRDM+GISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLV+APTRELA+QIK+ECDKFG SS IKNTCVYGGVPKR QVYDL RG+EIV+ATPGRLID LESG TNLRRVTYLVLDEADRMLDMGFEPQ+RSIVSQIRPDRQTLMWSATWPKEV+ +ARDFL++ YQVTVGSL+LSANKDI+Q V + ED  KY +L + L+E+N  GR+L+FVETK+GCD L RSL  +G+ A+AIHGDK+Q +RD  L  FKEGRS ILVATDVAARGLDVKDI+MV NFDFP  ME Y+HR+GR GRAG KG AISF   K+++ +REL +IL+++
Sbjct:   51 IQGDGIPKPVMTFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDRQTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCARELIRILKQA 428          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: XP_002294093.1 (atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] >EED88448.1 atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 588.6 bits (1516), Expect = 2.100e-164
Identity = 292/397 (73.55%), Postives = 334/397 (84.13%), Query Frame = 0
Query:  170 GHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTG-GRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAIS-FVTQKHARISRELSKILEESGNVVPAALRN---MGGGGY 562
            G GIPKP  TFEEASMPEYVL EV+K GFD PTPIQSQGWPMAL G++M+GISATGSGKTLAFLLPAMIHINAQ YL+ G+GPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGVPK +QV  LR G+EIV+ATPGRLIDHLE G TNL+RVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQ LMWSATWPKEVQ++ARD+L D YQVTVGSLDL+ NKD+ Q + VC D+DKY  LLR L+EN T   R+LVFVETK+GCD L RSL MDGFQA A+HGDKSQ++RDW LR+FK  ++ +LVATDVAARGLDV DI+MV NFDFPN+ E YIHR+GRTGRAG KG+A+S FVT+K+ R++R++ +IL  +   VP  L N    GGG Y
Sbjct:   61 GEGIPKPCMTFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAFLLPAMIHINAQQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRSLREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDKYRNLLRYLRENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATLLVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKNGRMARDIIEILNRTQQNVPPELLNAVQTGGGRY 457          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: XP_002176921.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51384.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 579.3 bits (1492), Expect = 1.300e-161
Identity = 289/399 (72.43%), Postives = 329/399 (82.46%), Query Frame = 0
Query:  168 VWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKEN-NTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAIS-FVTQKHARISRELSKILEESGNVVPAALRNMGGGGYGRG 565
            V GH +PKPV TF+EASMPEYVL EV+K GFD PTPIQSQGWPMAL GR+M+G+SATGSGKTLAFLLPAMIHINAQPYL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  Q+ +LR G EI +ATPGRLIDHLE G TNL+RVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQ LMWSATWPKEVQ++A D+L+D YQVTVGSLDLSANKD+ Q + VC D DKY  L R L+EN +   R+LVFVETK+GCD L RSL  DGFQA A+HGDKSQ++RDW LR+FK  +S +LVATDVAARGLDV DI++V NFDFP  M+ YIHRVGRTGRAG KG+A+S FV  K+AR++REL  IL  +   VP  L+ +     GRG
Sbjct:  120 VRGHDVPKPVMTFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAMIHINAQPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRELRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYLRENLSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLARELVDILNRTSQNVPQELQALTSFSGGRG 518          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: OEU22687.1 (DEAD-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 571.2 bits (1471), Expect = 3.500e-159
Identity = 279/399 (69.92%), Postives = 328/399 (82.21%), Query Frame = 0
Query:  168 VWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNT-GGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAIS-FVTQKHARISRELSKILEESGNVVPAALRNMGGGGYGRG 565
            V G  +PKP  TFEEASMPEY+L EV+K GF +PTPIQSQGWPMAL G++ +G+SATGSGKTLAFLLP MIHINAQPYL+ G+GPIVLV+APTRELA+QIK+ECDKFG+SS IKNT VYGGVPK +Q+ DL+ G EIV+ATPGRLIDHL+ G TNL+RVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQ LMWSATWPKE+Q +ARD+L + YQVTVGS DL+ NKD+ Q + VC+D DKY  LLR L+EN T   R+LVFVETK+GCD L RSL MDGFQA A+HGDKSQQ+RDW L +FK  +S +L ATDVAARGLDV DI+MV NFD PNNMEDY+HR+GRTGRAG KG A+S FV +K+ R+++EL  IL+ +   +P  L  +     GRG
Sbjct:   25 VVGKDVPKPCLTFEEASMPEYILSEVLKCGFQSPTPIQSQGWPMALKGQNTVGVSATGSGKTLAFLLPGMIHINAQPYLKPGEGPIVLVVAPTRELAVQIKEECDKFGKSSDIKNTVVYGGVPKSKQIRDLQSGTEIVIATPGRLIDHLDQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMWSATWPKEIQGLARDYLGEYYQVTVGSQDLTGNKDVTQIIEVCQDPDKYRSLLRYLRENLTPKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQQERDWALGEFKNCQSTLLCATDVAARGLDVDDIKMVVNFDMPNNMEDYVHRIGRTGRAGKKGTAVSFFVGEKNGRMAKELMDILKRTDQNIPPELNALASFSGGRG 423          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: GAX14556.1 (ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera solaris])

HSP 1 Score: 569.7 bits (1467), Expect = 1.000e-158
Identity = 285/412 (69.17%), Postives = 331/412 (80.34%), Query Frame = 0
Query:  167 AVWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKEN-NTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAIS-FVTQKHARISRELSKILEESGNVVPAALRNM----------GGGGYGRGRY 567
            +V G  +PKPV TF+EASMPEYVL EV+K GFD PTPIQSQGWPMAL GR+M+GISATGSGKTLAFLLPAM+HINAQ YL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  QV  LR G+EI++ATPGRLIDHLE G TNLRRVTYLV+DEADRMLDMGFEPQ+R I SQIRPDRQ LMWSATWPKEVQ++A D+L+D YQVTVGSLDLS NK+I Q + VC D+DKY  LLR L+EN +   R+LVFVETK+GCD L RSL  DG+ A A+HGDKSQ++RDWTLR+FK   S +LVATDVAARGLDV DI++V NFDFP  ME Y+HR+GRTGR G  G A+S FV +K+ R++REL +IL+ +  V+P  L+ M          GG G G  RY
Sbjct:  136 SVSGTDVPKPVMTFDEASMPEYVLTEVLKCGFDTPTPIQSQGWPMALKGRNMVGISATGSGKTLAFLLPAMVHINAQAYLKPGDGPIVLVLAPTRELAVQIKEECDKFGASSDIKNTVVYGGVKKGTQVQALRAGIEILIATPGRLIDHLEQGNTNLRRVTYLVMDEADRMLDMGFEPQIRKICSQIRPDRQVLMWSATWPKEVQALANDYLRDYYQVTVGSLDLSGNKNITQMIEVCTDQDKYRNLLRILRENYSAKDRVLVFVETKKGCDMLCRSLRADGYTARAMHGDKSQEERDWTLREFKNKNSTLLVATDVAARGLDVDDIRIVINFDFPKEMESYVHRIGRTGRGGKTGLAVSFFVAEKNGRLARELVEILKRTSQVIPPELQAMASFSSGAPKRGGRGGGGRRY 547          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: GAX22086.1 (ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera solaris])

HSP 1 Score: 567.4 bits (1461), Expect = 5.000e-158
Identity = 283/409 (69.19%), Postives = 330/409 (80.68%), Query Frame = 0
Query:  167 AVWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKEN-NTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAIS-FVTQKHARISRELSKILEESGNVVPAALRNMGG--------GGYGRGR 566
            +V G  +PKPV TF+EASMPEYVL EV+K GF+ PTPIQSQGWPMAL GR+M+GISATGSGKTLAFLLPAM+HINAQ YL+ GDGPIVLVLAPTRELA+QIK+ECDKFG SS IKNT VYGGV K  QV  LR G+EI++ATPGRLIDHLE G TNLRRVTYLV+DEADRMLDMGFEPQ+R I SQIRPDRQ LMWSATWPKEVQ++A D+L+D YQVTVGSLDLS NK+I Q + VC D+DKY  LLR L+EN +   R+LVFVETK+GCD L RSL  DG+ A A+HGDKSQ++RDWTLR+FK   S +LVATDVAARGLDV DI++V NFDFP  ME Y+HR+GRTGR G  G A+S FV +K+ R++REL +IL+ +  V+P  L+ M          GG G GR
Sbjct:  147 SVSGMDVPKPVMTFDEASMPEYVLTEVLKCGFNTPTPIQSQGWPMALKGRNMVGISATGSGKTLAFLLPAMVHINAQAYLKPGDGPIVLVLAPTRELAVQIKEECDKFGASSDIKNTVVYGGVKKGTQVQALRAGIEILIATPGRLIDHLEQGNTNLRRVTYLVMDEADRMLDMGFEPQIRKICSQIRPDRQVLMWSATWPKEVQALANDYLRDYYQVTVGSLDLSGNKNITQMIEVCTDQDKYRNLLRILRENYSAKDRVLVFVETKKGCDMLCRSLRADGYTARAMHGDKSQEERDWTLREFKNKNSTLLVATDVAARGLDVDDIRIVINFDFPKEMESYVHRIGRTGRGGKTGLAVSFFVAEKNGRLARELVEILKRTSQVIPPELQAMASFSSGAPKRGGRGGGR 555          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: XP_008867623.1 (hypothetical protein H310_04867 [Aphanomyces invadans] >ETW03394.1 hypothetical protein H310_04867 [Aphanomyces invadans])

HSP 1 Score: 556.6 bits (1433), Expect = 8.900e-155
Identity = 269/394 (68.27%), Postives = 321/394 (81.47%), Query Frame = 0
Query:  167 AVWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEESGNVVPAALRNMGGGG 561
            +V G G+PK V TFEEAS P+YVL EV++ GF +PTPIQ QGWPMAL GRDM+GISATGSGKTLAFLLPA++HINAQPYL+ GDGPIVLV+APTRELA+QIKQECDKFG SS IKNTCVYGGVPKR Q+ DL RG+EI + TPGR+ID L    TNLRRVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQTLMWSATWPKE+ S+A DFL D  QVTVGSL+L+ANK+I Q V V  D DKYG L+  L++   GGR+++F ETKRG D+L R+L    +   AIHG+KSQ++RDW L++FKEG++ ILVATDVA+RGLD+KDI+ V NFD P N+EDYIHR+GRT RAG KG A+S+ T ++ RI+ ++ +IL E+G  VP  L N+ G G
Sbjct:  121 SVNGKGVPKHVETFEEASFPQYVLDEVVRLGFASPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQPYLQPGDGPIVLVIAPTRELAVQIKQECDKFGSSSKIKNTCVYGGVPKRGQIEDLSRGVEICICTPGRMIDLLNINKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVSLAHDFLNDFIQVTVGSLELTANKNITQVVKVMTDMDKYGALMDLLRDVYEGGRIIIFCETKRGADELCRNLKGTRYATRAIHGNKSQEERDWVLKEFKEGKAQILVATDVASRGLDIKDIRYVINFDMPKNIEDYIHRIGRTARAGMKGTAVSYFTAENGRIAGDMIRILSEAGQEVPRELENLRGYG 514          
BLAST of NO07G01090 vs. NCBI_GenBank
Match: XP_009040608.1 (hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens] >EGB04694.1 hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens])

HSP 1 Score: 555.1 bits (1429), Expect = 2.600e-154
Identity = 282/404 (69.80%), Postives = 322/404 (79.70%), Query Frame = 0
Query:  170 GHGIPKPVFTFEEASMPEYVLQEVMKQGFDAPTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGDGPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRRGMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIVSQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQEVMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARG---LDVK-DIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEESGNVVPAALRNMGGGG------YGR 564
            G G+PKPV TFEEASMP+YVL EVMKQGF  P+PIQ+QGWPMALLGRDMIGIS TGSGKTLAFLLP MIHINAQPYL+ GDGPIVLVLAPTRELA+QIK ECDKFG SS IKNTCVYGG PKR Q  DL+RG+EIV+ATPGRLID LESG+TNLRRVTYLVLDEADRMLDMGFEPQLR IVSQIRPDRQTLMWSATWPKEV++MA DFLKD YQVTVGSL+LSANKDI Q V   +D  KY  +   LKE+    +M+VFVETKRGCDQL RSL+ +GF A  IHGDK+Q +RDW L +F+ G+  +LVATD A R    L  +   +MV NFDFP+N+EDY+HR+GR GRAG KG A+SF TQK ++ +  L KIL ++G  +P  L+ M   G      YGR
Sbjct:  141 GRGVPKPVSTFEEASMPDYVLTEVMKQGFKEPSPIQAQGWPMALLGRDMIGISRTGSGKTLAFLLPGMIHINAQPYLQPGDGPIVLVLAPTRELAVQIKVECDKFGASSQIKNTCVYGGAPKRTQTGDLQRGVEIVIATPGRLIDFLESGVTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEVRNMANDFLKDFYQVTVGSLELSANKDITQYVECVDDGAKYRRMTDFLKEHGV-DKMIVFVETKRGCDQLSRSLAHEGFPARCIHGDKAQDERDWVLNEFRSGKCPLLVATDRAPRARARLTARLRRRMVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFFTQKSSKWASGLCKILGDAGQKIPPELQQMQSYGXXXXXRYGR 543          
The following BLAST results are available for this feature:
BLAST of NO07G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27261.18.400e-22296.25dead-box atp-dependent rna helicase [Nannochlorops... [more]
CBJ28373.16.800e-17177.72DEAD box helicase [Ectocarpus siliculosus][more]
CBN73878.11.200e-16777.25DEAD box helicase [Ectocarpus siliculosus][more]
XP_002294093.12.100e-16473.55atp-dependent RNA helicase [Thalassiosira pseudona... [more]
XP_002176921.11.300e-16172.43predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU22687.13.500e-15969.92DEAD-domain-containing protein [Fragilariopsis cyl... [more]
GAX14556.11.000e-15869.17ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera ... [more]
GAX22086.15.000e-15869.19ATP-dependent RNA helicase DDX5/DBP2 [Fistulifera ... [more]
XP_008867623.18.900e-15568.27hypothetical protein H310_04867 [Aphanomyces invad... [more]
XP_009040608.12.600e-15469.80hypothetical protein AURANDRAFT_70381 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL099nonsL099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000765NSK000765Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01090.1NO07G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580331gene_2427Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100038g3gene3285Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01090.1NO07G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01090 ID=NO07G01090|Name=NO07G01090|organism=Nannochloropsis oceanica|type=gene|length=4521bp
ATGATTAAGGCGCCATCGGGATCATCCTTACGACTGGACGTGGCGGAAAG
CAACCATCTCTGTGCGAATGAGAATCAGGAGCCACGCGTGTTCTGCCACC
AGAGCAAGTGGCGCCACACATGTCTCGACTCATCCTTAAGCAGCTTATTT
TACCGACGGCGTCACATTGTGACCTCCATGTCGTCCTCGCCCAGCCTGGC
CTCCTCCTACCCCATCGACCATCGATCCTGTGTCCCACGTCGTCCTCATT
CCCATTCCTCCGCCCCCTCCTCGCCACGAATCACAGAAACTTACATCAAG
CGAATCCAAGCGAAACCAGTATGTCTTACGGCTCTTACGGCGGCGGCGGT
GGATCTCGGGGTGGTGGCGGgtacgtccaatgtcttgactttctttccct
cccattcgcagggttcttcgattccatggcccactcattttcctaaacac
gccctttttgttccccacacgcatatgcgtatgcacttgtgtcctcattc
ctttccgtttactcattagcaatgacggtggcagatgcatgggcggattt
gaattctgtatgtctatcacgatggtctctcgcggcatcacataaaccct
ctccaaacctcaaatctcatccaccctttcactttctctttacgcgcacg
tgtgacctttgctcattctctttctcttccttccagCTACGGCGGCGGCG
GCAGgtacgtttcattgcacttatctatctacctagctcaaggtagttgt
atgcgtgctcgtgtgccagcccgactgcctaccccaatcttgtatgcgtg
ctcgtgtgccagcccgactgcctaccccaatcttcttcctttgatcaacg
tcctcacctcccctcttccacgcgcacacacgctttgaatatgatcggca
tgccttttctcctctctctcacacattagCTATGGTGGTGGCGGCAGTGG
TTACGGCAGgtatggtgcgctctttcgcgtgtcttattgtgcttgtgcct
gtatgtgcattcatccgtgtcactgacaggaatcaaactacgtattgtat
gtgtcacctcacacaattttcttttcatcccacacacaacgccatatttc
aactctcattttcctctcctacactcgccctcatattcccttctctcttc
cttacgaaatcaatagCTACGGCGGGGGCGGCGGGGGCGGCTACGGTGGT
GGCGGCGGCGGCTTTGGTGGCGGCCGTGGGGGTGGTGATCGTATGGGCGG
TCTGGgtgcgggtctgagaagcatacactgggacctgaataaactccctc
ccttcgagaaaaacttttacatcgagcaccccgacgtgacgaaacgagag
gagaccgaggcggcacgctggaggacgaagcatggcattaccgtgcagGG
GCATGGGATCCCTAAGCCTGTGTTTACATTTGAAGAGGCGTCCATGCCCG
AATACGTGCTGCAGGAGGTTATGAAGCAGGGATTTGACGCGCCCACCCCT
ATCCAGAGCCAAGGATGGCCCATGGCGTTGTTGGGCCGGGACATGATTGG
GATCTCGGCGACAGGGTCGGGGAAGACATTGGCGTTCTTGCTGCCGGCCA
TGATTCACATTAATGCTCAGgtgcacattttttctttttctacatttgat
tttgaggaatacagtaatattaggtgtaggagtagtaggaaatgtagtgt
tactaagggcagaagaattacgtggtcgggagggggaggtggaggaggaa
gaggttagtggtttgagagttcggggggagagatacacgcgcgtgtgtat
gatgactggaaggcaagtcgttctctcattagggcacgcctctctctacc
cttccccttttgctggataagaagggagggacgggataccgcacgcggga
gaagcagtgcgaccgaaagcacgcgcattttaaaacgagaggcctcttcg
gtgaatccttccctctttttttactctctttgtgcatgagggctaaggga
aggacaggctcacacaaaaagcaggcacacgtcgtgggacaggagagagg
atcgaattgtggggggaacatgaggccaacggtaggggatggggttgggt
tggaaacttcctccctttcctctctcttccctatcatctcttttcctcct
ctccttccttcagggcagagccactgaaaatgaaattgaaggctctgtct
aggtcaaaggctggggcggcggcgacgcccacagcgccgcctccgccgct
tcctcctcctcttgttgttggagcccttgctgcgggtgccgttggcgaaa
gctggtggccacaagcattggcgtggctatctatcgcttcctccacatgc
aacccaagccacagaaacgccaatcatggtcatccttgtcctcttcctca
tcctgctctcctctctcacacagtacgtaccgcgtgattctgctcgttgc
tcgtccttttcttttcgttgttgaataatttgtctcttctcttcctccct
gtctctttcttgaagggcgggagaataaagaaaagacattgaaaaaatga
caaaaaggaaggataaaagacgaaaagttcacaccaacggtacaagctcc
gaaagagaaagatgagcttttaaggcgctggaaagagacgacgaaggagg
atgttgtggtgtttgggcctttcgtattttgaattggaatcgaagcgatg
cgcacgaatgatattcaaaggaagaatagaacctgtcgtcactcacagtg
tggtgaatgtatggcagtgacggtgctgacgcgcatatccatgtgttagt
gtgtgaggccacgagatgcattccctatgatcatttcgggaatgacatgc
gagacatgtgggcgtgtctaggatgtgcgtgaatgtggatagttaaataa
taaaggctttatatataagtgtgtgtgtgggtgtgtgcatatgtgtgtgt
gtatgtatgtgtgtgtatatgtgtgtatgtatgtatacatatatgtgtgt
gtgcaagtgctttggtcttcgctttgtgcgacaaaggatggcattatccc
tattaaccctaaccttaaccctatatctatatacgtatgtacctcgcttt
tcttcggatcttaagtctttttttccctctgcctccatcaaatacttctt
tacccccctccctccttcccgtgcgccgtcgaatcacctgacgacttact
cattgtcatcccctaccctcactgcgttaatatgatgggaaacgaaggta
cagaatcttgatacttttctaccgaatcttctcaactctctctccctccc
ttcttccctccctccctacccccgcttcccccagCCTTACCTTGAACAAG
GGGATGGACCCATCGTCCTCGTCCTGGCCCCGACCCGCGAGCTCGCCCTG
CAGATCAAGCAGGAATGTGACAAATTTGGAAGGAGTTCGTCGATCAAAAA
TACGTGTGTCTACGGTGGAGTGCCCAAGCGGGAGCAGGTCTATGATTTAC
GCCGGGGGATGGAGATCGTGGTGGCGACGCCGGGGCGATTGATCGACCAT
TTGGAATCAGgtaagctattgattcggcttttacctgcatccattcgcct
ccataaatcctcatcattccttaattcacggttccctcttctgaaagGCA
TGACCAACCTGCGCAGGGTCACCTACTTGGTGCTGGACGAGGCGGACCGG
ATGCTCGACATGGGTTTCGAACCCCAGCTTCGTTCCATCGTCTCCCAGAT
CCGCCCCGACCGACAAACACTCATGTGgtgagctacgccccatctccccc
tatccctctcctgcctaacctctccagccccagctatcttcatttcaccc
ttacctctcttctctcgtcccccctctctttttacctcccttcttcgcac
cctagGTCCGCCACCTGGCCCAAGGAAGTGCAGAGCATGGCCCGCGACTT
CCTCAAGGACCCTTATCAGGTGACCGTCGGCTCGCTGGACCTGAGTGCCA
ACAAAGACATCAAGCAAGAGGTGATGGTGTGTGAGGACCGGGACAAGTAC
GGCTTGCTGTTGCGGGCGCTCAAGGAGAACAATACGGGAGGCCGTATGCT
TGTATTCGTGGAGACCAAGCGCGGATGTGATCAGCTACAGCGTTCTTTGT
CGATGGACGGCTTCCAGGCGGTGGCGATCCACGGAGACAAAAGTCAGCAG
GACCGTGATTGGACACTCAGACAGTTTAAGGAAGGAAGGAGTAACATCCT
GGTGGCGACGGACGTAGCGGCCCGTGGGTTGGACGTGAAGGACATTCAGA
TGGTGGCCAATTTTGATTTCCCGAACAATATGGAGGATTATATTCATCGG
GTGGGGCGGACGGGGAGGGCGGGGGCGAAGGGGTATGCGATTTCGTTTGT
CACGCAAAAACATGCTCGGATCTCGCGGGAGTTGAGCAAGATTTTGGAGG
AGAGTGGCAATGTTGTCCCTGCGGCATTAAGGAACATGGGTGGAGGGGGA
TACGGTCGTGGGCGCTACTAA
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protein sequence of NO07G01090.1

>NO07G01090.1-protein ID=NO07G01090.1-protein|Name=NO07G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MIKAPSGSSLRLDVAESNHLCANENQEPRVFCHQSKWRHTCLDSSLSSLF
YRRRHIVTSMSSSPSLASSYPIDHRSCVPRRPHSHSSAPSSPRITETYIK
RIQAKPVCLTALTAAAVDLGVVAATAAAAAMVVAAVVTAATAGAAGAATV
VAAAALVAAVGVVIVWAVWGHGIPKPVFTFEEASMPEYVLQEVMKQGFDA
PTPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQPYLEQGD
GPIVLVLAPTRELALQIKQECDKFGRSSSIKNTCVYGGVPKREQVYDLRR
GMEIVVATPGRLIDHLESGMTNLRRVTYLVLDEADRMLDMGFEPQLRSIV
SQIRPDRQTLMWSATWPKEVQSMARDFLKDPYQVTVGSLDLSANKDIKQE
VMVCEDRDKYGLLLRALKENNTGGRMLVFVETKRGCDQLQRSLSMDGFQA
VAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDF
PNNMEDYIHRVGRTGRAGAKGYAISFVTQKHARISRELSKILEESGNVVP
AALRNMGGGGYGRGRY*
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Synonyms
Publications