NO07G00990, NO07G00990 (gene) Nannochloropsis oceanica

Overview
NameNO07G00990
Unique NameNO07G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1027
Alignment locationchr7:318054..319080 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:318054..319080 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G00990 vs. NCBI_GenBank
Match: EWM27293.1 (hypothetical protein Naga_100080g17 [Nannochloropsis gaditana])

HSP 1 Score: 137.9 bits (346), Expect = 5.300e-29
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 0 
Query:    1 MDDVEDADLCLAG-NASDEETVQFKNALVRQLNVLMEADDADATLVEYICVMVLGNRKKMKDVRSAIEDLLGASVATPLYEWLCEYVRDLCETHEVLRQDEEEM 104
            MDDV+DA L L G +  + ET QFK+ALVRQL+VL+  + AD +LVEYICVMVLGNR+KM +VRSAIEDLLGA++  PL +WLCEYVRDLCETHE L+ +EE +
Sbjct:    1 MDDVDDAALSLKGVDILEVETAQFKDALVRQLHVLLNNETADPSLVEYICVMVLGNRRKMGEVRSAIEDLLGATMTAPLQQWLCEYVRDLCETHESLQHEEERV 104
The following BLAST results are available for this feature:
BLAST of NO07G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27293.15.300e-2966.35hypothetical protein Naga_100080g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000781NSK000781Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00990.1NO07G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00990.1NO07G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00990 ID=NO07G00990|Name=NO07G00990|organism=Nannochloropsis oceanica|type=gene|length=1027bp
ATGGACGACGTGGAGGACGCAGATCTGTGCTTGGCGGGCAACGCCTCTGA
TGAGGAGACAGTTCAATTTAAGgtacgttcgagctcgtctccagcctccc
taccccccatccctgccataacacccactacaccacccctcgctcaacct
cctcaaccctatctccctaatcctcctgcctctatcacagAACGCTCTTG
TCCGACAACTCAATGTTCTTATGGAAGCCGACGACGCCGACGCCACGCTT
GTTGAATACATCTGCGTGATGGTGCTTGGCAACCGCAAGAAAATGAAAGA
CGTCAGATCGGCCATCGAGGACTTGTTGGGTGCTTCTGTGGCGACGCCGC
TTTATGAGTGGTTGTGTGAGTATGTCCGAGATTTATGCGAGACGCATGAG
GTGTTGCGGCAAGACGAGGAGGAGATGCAGGCGATGCTGGAGCAGCACCA
GCACCAGCGCCATGAGCACCACCAGCACCACCAGCACCACCAGCAGCAGC
AGCTCGAGCGTGGGCGGCAGCACCAGCAGCAACAGGAAGATACTGAATAT
GCAGAAATGTTTCAGGAGGAAGAGGAAGAGTGTGGGGAGCGTAATGGCAT
GGAGCAAGAGGAGGCGAAAGAGGAGGAGGAAAAGCTGCCTGAGCGAAGGA
TTGGCATTAGCAGCGTTGTTTCTCAGCATGATACGCCAGGTCTTTATGAA
CATCAGCAGCAGCAGCGGCATCGACACTCACTAAGGTTATCCTCCTCCTC
CTCTTCCTCCTTCTCCTCCTCCTCCAGTTCGAGTTCCAAGGGTGGCGATC
GACTGTTTTCTTCGGCCTTGCAGCAATCCGTGCGTTCTGTACGCATGCCC
GTCGCAACACCTGGAGCAGCCGCAGTACCATCAGAAGCTGAAAGAGAAAA
AAGAAGTGGCAGGGTTGTTCGGGGAAGCTTTGCAGAAGCCAAGTCTGCGC
GCGATGGTGGAGGATTTGGTGGAAGAAGAGGACGAGAAGGACGAGGAGGA
GGACGAGGAGGAGCAAGGGGGGGATGA
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protein sequence of NO07G00990.1

>NO07G00990.1-protein ID=NO07G00990.1-protein|Name=NO07G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MDDVEDADLCLAGNASDEETVQFKNALVRQLNVLMEADDADATLVEYICV
MVLGNRKKMKDVRSAIEDLLGASVATPLYEWLCEYVRDLCETHEVLRQDE
EEMQAMLEQHQHQRHEHHQHHQHHQQQQLERGRQHQQQQEDTEYAEMFQE
EEEECGERNGMEQEEAKEEEEKLPERRIGISSVVSQHDTPGLYEHQQQQR
HRHSLRLSSSSSSSFSSSSSSSSKGGDRLFSSALQQSVRSVRMPVATPGA
AAVPSEAEREKRSGRVVRGSFAEAKSARDGGGFGGRRGREGRGGGRGGAR
GG*
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Synonyms
Publications