NO07G00930, NO07G00930 (gene) Nannochloropsis oceanica

Overview
NameNO07G00930
Unique NameNO07G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5548
Alignment locationchr7:300439..305986 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:300439..305986 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G00930 vs. NCBI_GenBank
Match: XP_005705738.1 (hypothetical protein isoform 2 [Galdieria sulphuraria] >EME29218.1 hypothetical protein isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 75.1 bits (183), Expect = 5.500e-10
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 0 
Query:  227 PRFRVKVEPMTTLKLRKRFYPFK-TVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERLQPLNLKDGVTLRRRL 347
            P+   K  P T LKLRK FYP   T + LGAD + Q G W F ++W+DRIIGGRL VK  ++   K +LV   +  +I     ++ G     +R     G +T    P     G+ LRR++
Sbjct:    5 PKLVWKCNPSTKLKLRKHFYPLALTKLTLGADLDLQHGFWTFHTAWKDRIIGGRLAVKDNQVSLVKEFLVDQKNTFNIHISYDWKIGQTLFGFRFSPYRGIQTNTHPP-----GMALRRKV 120
[Close]
BLAST of NO07G00930 vs. NCBI_GenBank
Match: EJK74514.1 (hypothetical protein THAOC_03801 [Thalassiosira oceanica])

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-9
Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 0 
Query:  226 IPRFRVKVEPMTTLKLRK---RFYPFKTVIELGADYNTQ---IGVWQFKSSWEDRIIGGRLTVKGRE----------LQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERLQPLNL----KDGVTLRRRLPLDGTEGHAKLEVRANL 364
            IPR  V  +P+TTLKLRK      P+  +I +GAD  T     G W+ +   ED+IIGGR ++  R           + +SK+W +         TRL   A  D  T R   R+GF+ E +    L    + GV++   LPLD  +   +LEV++N+
Sbjct:  109 IPRISVGFDPITTLKLRKSWENILPW-AIIRVGADLETHRLGRGAWKLRGCLEDKIIGGRFSLNERYNRDTDQRALLVGYSKSWFIANDYGAGSGTRLNISADYDVKTRRGGIRMGFQQESVWQSYLLPGRRRGVSIVPTLPLD-VDRRVQLEVKSNI 264
The following BLAST results are available for this feature:
BLAST of NO07G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_005705738.15.500e-1037.19hypothetical protein isoform 2 [Galdieria sulphura... [more]
EJK74514.11.600e-933.54hypothetical protein THAOC_03801 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000789NSK000789Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00930.1NO07G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580260gene_2410Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100080g10gene3267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00930.1NO07G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00930 ID=NO07G00930|Name=NO07G00930|organism=Nannochloropsis oceanica|type=gene|length=5548bp
GGGGAAAGGCGCACTCGGCAGGAGGCGGCAGCGCAGCTGCTCTGGCATGG
ACACATGCATGTGGCCTGCGTTGCACAGGTTGTGACTGTGCTTATTTTTA
ATCCCAGACCACTAGAGGTGGTGAATACAAGGCAAGCCGCTCGATGGGGA
GATGAGACACCAAGATGACGATGACATACTGAAAGCCCATCTTGCTTGAC
CTTGCGAACGCGACCTTGCCTTAAGACCTCAATAACTTGACACTGTCAAG
CCATTTTTCTCTTGATTGGCGTACTCGACAACTACGCAAAAATGCTATAC
ACTCGATAGACAGACAAAAACATGAATATGTCTGCCGGGAGTGCTCACAT
TGAGCGAGGCTGCGCACGCCGATTTGGTCTCGAAAGCAGCGAAGAACCGG
ACTCCCCCTTGCGTTCGTCGTACCTGACAACGCTGCACGGGACACAAAAC
CTCAAACAGACGGTTGTCTGCTGCACAACTTTAGAGAGCGCGCGCCTACA
AGCTCGTAGTTTATACCAGCGCTACGGTGGCGCAGGGACCGAGCCCAGGC
CTTGATTCTTGTCAAAGCAGAACGCAGTTGACGCTAATGCGTTTTTCACA
GCGCGTCAGTCGACGACGTGTAGCGCTGTACTTGCTTTGCCATTTCATAG
ACTGCGGAGTCACCCTTGACAGTCTAATCCATCACACTCACACACATATT
CATACAACATAGCACAAGGAGGTGCGTGGATTATTGGCTTGGTGGAACGC
CTGGCCGTGGACGGAGAGAGGAGATCGAGGAATCACCCGACGATGCTGCC
TGGGCGAGGAGGAGGGCGAGGAGAAAGAGGAGTCAGCACAAACCATGAAG
GAGGAGAGGGAGGACATTCACCATTTTTGCCATCACACGGACAATACCCA
CCAGCAGAACAACGAGGGCCATGCTGGCGTGGTGGGGCATCGAGAAAAAG
AAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAAGGAGCTAA
AATCGATGACGACGAACATTCCAACGGCGCACTTATTGTCAATTAGCTTG
TTTACTCTCTACATCTTGTCCACATTGCTCCGTGCCGCGGATGCTGCACG
CACACTCGGGAATTTTGGCGAGCCACCGCCGCCGCCACCACCAGTGGGGG
CTAGgtacgtgggagagaggagggaggtggatagaaagaagggtctggac
acgggcatgcttccttctgaccagggaacatgacaatagagaaacgggtc
acgtagaaagaggaaggaaatacgaggaccaggatgccgggaagaaatgg
tgcgtggcttcaccgcataaactccgctccctccctctgtccctccctcc
ctccctcccgccctcccccactctctctccctcctccttttcagGTACGG
CCATGGCATCTTCGACCGGCGTCCGAGCAAAGATGGGAAGAAAGGGGGAA
GCAGTAGAGGAGTGGGAGGGGAAGGCCGGGAAGGAGGGAGCGGGGGAGGG
ATTGGCGGGAACGTGTTCTGGAAGCAGTGGTATTTCCCAGTCAAAACTCG
GGGGAGAAATATGGGGGAGGATGAGGACGATGGGATGGATGGAGCTGACG
GAGGGGATTACTTCAACCCTTTGTTTGATGGGGAAGGGGGAAGGGCGGAG
GCGGCGGCGGCGGAGAGGGAGTTTGAGTCGTCGGACAGGCGACCGTGGAC
TGATTTGATTCCACGGTTTCGCGTCAAGGTAGAGCCGATGACAACATTGA
AGCTGAGAAAGAGATTCTATCCCTTTAAGACCGTGATTGAGCTGGGGGCG
GACTACAACACGCAGgtagggagttagggatggagggagagagaggaggg
agggaggaataaatggagggagggagagagggagagaggaaaatcaggtg
tttgagacggaaaaatagtaagggttgaaccaacggcttcccgctcgctg
tctcgagaacagagcacactagtccatcacactcattactcactccttcc
ctcccttccttcctcagATCGGCGTGTGGCAGTTCAAGTCCTCATGGGAA
GATCGAATCATTGGCGGCCGTCTGACAGTGAAGGGACGAGAGCTTCAGTT
TAGCAAGACGTGGCTGGTGACGCTTGGGGACCAGGACGACATTGCCACGA
GGCTCAAGTTCAGGGCCGGGATAGACACAGGAACCTGGCGCTCATACGCA
CGGTTGGGCTTCAGGACGGAACGgtgagaaatcgatagttacacgatatt
ttcgttttaaaatttgttatgttttcctctggggttgcggcggttgattt
ctttggtaggggccgagagggggcctgctttggtgttttttttccccctc
cgttttgctatcccttgttcttcctccaccgacagatgcttcctttctta
ctcgcttgataatgaccacattaacttacccccctttcctccctttctca
ttctttccatccatccatccttcagGCTTCAACCCCTAAACCTGAAAGAC
GGTGTCACCCTCCGCCGGCGCCTCCCTCTGGATGGCACCGAGGGCCATGC
GAAGCTCGAAGTGAGGGCAAATCTGTGTTTGCCCGAGCCGGAGATTGAGT
ACTCAACGGACAAGAAACGGTTGATCATGGGGACTGGGGATATACAATTA
AGCATCGACGAGCTGAATTTGTGTTTGGAATATTAGATGTCCTCGCATTG
GGGATGGGGGGGAGAGACCGTTAAGCGAAGGGGGGAAAGGAGAAGGGTTG
AGGGGAGTCGGTAGAGAAGGAGAAACAGAAGCCTTGGGAGAAAAAGGAGA
GGCATGACACCAGTGCTGCCATTCGACTTTGTTTCGTTTCGTTTACATAC
ACAAGAAGAAGAATTGAGGAAAGGGAGAAAGGAAGCCACAAACCACCTAG
AGAGTGGGGAAAGGAGGAGAGGGGAATAAGGAAGAGGGCAGGCAGGAGAA
ACTGTTCAAAAGTAAGAGCAATGACGACACCAAAATCGAATCCGCTTTCT
GTCATGAGGACGACAAGGAAGAGGATGAGAATGAGGTTAAGAGATCCGTG
ACCCACAGGGTAAGGCAGGCCACAACGTTGATGACACGGAGAGAAATAGA
AAGAAGTAGAAGAAGATAGAAGAAGACTTACCACTGGTGAGGTTTCGAAG
AGTTTTCTTTCAGATTATCCTTGAATCCACCCTTTTGTGCTTGCAGAGTA
GAATGAAAAAAACCCAAGCCGCCCGCCTGCCCCCGTAACGACGAAAAAAA
TAGGCATGAAGTCAGCGACTGTACCTTTTTCAATTCTTGATCTCTGTCTC
TGTCTTCTCTTCCTCTCTCCAATATACTCGACGTAATCTATGCTTTACCC
TCCTCTCGTCTGTACTCCTCCTCGTCCTCGTCGTCTTCCTCCTTTTCTTC
AATCATGTCGCGTCTCTTCCTCCTACACGCCTGACGAAATATAAGACTAC
AACTGCTCTCTCTCCTCCCCTCCTTTCTCCTCTCTCCCTCTTCCCCTTTC
AATCTATTCAAAACACAAATGCGATGCCTTCCCTGATTTCATCCCTATCT
TCACAGGCGTTTATCATCTCCCCCGTAAGAGTAAAAGCTCTTCTCCTCAT
CTCTCTTGCCCCGCGGTGGTGGGGATGTAGACTGAGAAAAACACTTCAAC
AACCCTCCTCTCTTACGTCTCCACACCATCTCCAATGCATCTCCATCTCC
ACAAGGTCGGCTCCGTCGTATTTAGAACAGCACCAGAATCCTCACCTGTA
TTCATCATTATCCTGATACTCGCCACCACAAGCGGAGTCCTACATGACCG
AGTCCGTCCTCTATTCCCCTCCAGCCCGCAAATTACAAAATTTACGTCGC
TGGCTCCGTCGAGTCTGCATCAGCATCAGCATCCGTAGCCGCATCATCAC
TATCATCATCGCTGTCGTCGCTTCCACCACAGGCAGATGTGTCACAGCAT
GCCGTACAGGAGCCGGCCATACCAGCCGTTGCCCACGAGTCCTTTGTTCC
ACACCCACCCGCCGCAGCTCCCCCCGTGCACTGCACTGGCTCTGTGGCAC
CACACATGGACATAGATGCACATTGTTTTGTTGTGCATTTCGCACACGTC
AAGGCAGGTGCACACGTCTTCAGATCACAGCAAGTCTTGCAAATGCCATT
CAAAATCCCCTGAGGCCAATACGCCGACTCCGTAGAGCACCCTCCCGCGC
TCGGTCCCTCCACGCAAGCATATCGACGGTTAGCACCACAGACAGACTGA
ACCTTGTGACAGTCCTCCGGGCTGCATTGTCCGCAAGTGGGGGCCTGGCT
CGCGCATCCTGCAAGGGTACAGAAATCAGAGCAGCCGGGTTGTTCCCAGG
CGCTCTGTACCTTGGCACAACCCCCTTTGGCAAAGCCACCGACGCAAACA
AAGGGGAAGGCGGAAGGGTCACAGCCACTGTAGGTCTTACATTCGTCCAA
CGTGCAGTTTCGCGCAGGGCCTCCGACCTTCCTTCTGGCTGTGGTATGGT
TGCCCTTTGACGACGAGGAGGAGGAGGAGGAGGAGGCGGTGGAGGAAGAG
TTGGCTTTTAAGACGTCTTTCGGCACCATATCCTGCCACCCCGTGGAGGC
TTTGGGTGAGTTGCCGGCCACATCATTCCCGGTTGTGTTGGATATAGGGC
TGGGGGACATGAGACGCGCAGGGGATGTATTAGACGAGGCGGAGGAAGAA
GAGGTGTTCGAAGCAACAGCAACGGCGGTCAAGACCACCGCCACCAAACC
AGCAATAACCATGCCAATCTTCCCATGCGTCCCGCGTCTCCCCTCTTGAT
GCGGCTGGCGACGAAGAACGCTGATGGTTGCGCCTTCCTCGTCCTGGCCC
AGCTCGACTGCGCCATAACGCCCGTAGCTGCTCGGCCGAGCATTCTCCTC
AACAATGTCGACGTGCGGCATCTTGCGCTGAAAAGTTTGACGAGCCTGTG
TGTTGGTGCATTGGTGCACGAGTGTTTTTTTGTGTGTGGGTGAGTAGGGT
GTAGTGGTGTGCACAGCGTACGGGACAGATTCACCCGCCGCCGCTTGTAA
CAGAACTTCTTGGCGGAGCCTCCTGAACGAAGAAAGAGCGCCCTTTCTTC
TCCCTCGAGCCACCACCAATCTGACATTCCTGTCGCTTGGGAACGCAATT
CTACAGCACTGCACGCCTTAAGAAATTGAGGTTGAGATGATGGAGAGGAA
AAGGGGTGGCAAGCGTGTGGATGAGCCAAAAATTCTGAGATACAGGAAGG
AAGTGCGTGTGTTCTTGTTCAATGAGTTGTTGCCGTTGCCGTCGTTCGCC
GGCACATCCACGGGACGTGTCAAAAAATGTGCCAGGAGTCTCTATGGACA
TTCATCAATAGGTTGGTTATATTTTTCTTCTTGTCTCCTAACGTTCAACG
TCGTTCATACCCGTGCATGCAAAGGCGTCGGCCATCCACATACCTGGCTT
CCCCCACCAACCTCCCCGTCTCTCTCGGCCAACAGCCTTCGTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
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protein sequence of NO07G00930.1

>NO07G00930.1-protein ID=NO07G00930.1-protein|Name=NO07G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MLPGRGGGRGERGVSTNHEGGEGGHSPFLPSHGQYPPAEQRGPCWRGGAS
RKRRGGGGGGRGRGRGKELKSMTTNIPTAHLLSISLFTLYILSTLLRAAD
AARTLGNFGEPPPPPPPVGARYGHGIFDRRPSKDGKKGGSSRGVGGEGRE
GGSGGGIGGNVFWKQWYFPVKTRGRNMGEDEDDGMDGADGGDYFNPLFDG
EGGRAEAAAAEREFESSDRRPWTDLIPRFRVKVEPMTTLKLRKRFYPFKT
VIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQ
DDIATRLKFRAGIDTGTWRSYARLGFRTERLQPLNLKDGVTLRRRLPLDG
TEGHAKLEVRANLCLPEPEIEYSTDKKRLIMGTGDIQLSIDELNLCLEY*
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Synonyms
Publications