NO07G00900, NO07G00900 (gene) Nannochloropsis oceanica

Overview
NameNO07G00900
Unique NameNO07G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr7:290588..290920 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein S27/S33, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:290588..290920 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
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BLAST of NO07G00900 vs. NCBI_GenBank
Match: EWM27276.1 (Ribosomal protein S27/S33, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 1.500e-45
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0 
Query:    1 MSTGSKLGKIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIADKVVTYYPATINKIAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEGKRAQQAKKKK 111
            MSTG K+GKIVLGAAEV  LKEASRRIFG+LPQLN GKTGNKILRK LI DK+VTY+PATIN+IAH+EW+GYKTD+DIWRENRL RM+ RGNPPTKKGEGKRAQQAKKKK
Sbjct:   89 MSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
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BLAST of NO07G00900 vs. NCBI_GenBank
Match: EPS67987.1 (hypothetical protein M569_06784 [Genlisea aurea])

HSP 1 Score: 63.5 bits (153), Expect = 4.600e-7
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:    9 KIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIADKVVTYYPATINK-----IAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEGKRAQQAKK 109
            K VL  A + G+ EA  RIFG++       + +KILRK LI +KV ++YP  INK     IA KE           R NRL  +  RG  P KKG+GKRA++A +
Sbjct:    5 KKVLAKAAMDGVTEARARIFGHILNPEGTPSPHKILRKKLIGEKVASWYPYDINKNDPVVIARKEQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKANR 100
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BLAST of NO07G00900 vs. NCBI_GenBank
Match: XP_011080148.1 (uncharacterized protein LOC105163487 [Sesamum indicum])

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-7
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:    1 MSTGSKLG--KIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIADKVVTYYPATINK-----IAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEGKRAQQA 107
            MS  S LG  K VL  A   G+ EA  RIFG++      ++ +KILRK LI DKV  +YP  INK     +A +E           R NRL  +  RG  P KKG+GKRA+++
Sbjct:    1 MSVCSGLGSLKNVLAEAAKRGVTEARARIFGHVLNPTGQRSPHKILRKKLIGDKVAAWYPYDINKDDPLVMARREQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKS 104
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BLAST of NO07G00900 vs. NCBI_GenBank
Match: KZV49444.1 (Mitochondrial isoform 1 [Dorcoceras hygrometricum])

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-7
Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 0 
Query:    1 MSTGSKLG--KIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIADKVVTYYPATINK-----IAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEGKRAQQAKK 109
            MS G  LG  K VL  A + G+ EA  RIFG++      ++ +KILRK LI +KV  +YP  I K     IA +E           R N+L  +  RG  P KKG+GKRA+++ K
Sbjct:    2 MSCGGSLGSLKNVLADAALKGVTEARARIFGHILNPTGQRSPHKILRKKLIGEKVAAWYPYDIKKDDPLIIARQEQE---------RLNKLEMLKRRGKGPPKKGQGKRAKKSSK 107
The following BLAST results are available for this feature:
BLAST of NO07G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27276.11.500e-4584.55Ribosomal protein S27/S33, mitochondrial [Nannochl... [more]
EPS67987.14.600e-741.90hypothetical protein M569_06784 [Genlisea aurea][more]
XP_011080148.17.900e-741.59uncharacterized protein LOC105163487 [Sesamum indi... [more]
KZV49444.17.900e-740.00Mitochondrial isoform 1 [Dorcoceras hygrometricum][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000793NSK000793Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00900.1NO07G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00900.1NO07G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00900 ID=NO07G00900|Name=NO07G00900|organism=Nannochloropsis oceanica|type=gene|length=333bp
ATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAAGT
GACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCAAT
TAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTGCA
GACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCACAA
GGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAGAT
TGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGGGC
AAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAG
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protein sequence of NO07G00900.1

>NO07G00900.1-protein ID=NO07G00900.1-protein|Name=NO07G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MSTGSKLGKIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIA
DKVVTYYPATINKIAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEG
KRAQQAKKKK*
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Synonyms
Publications