NO07G00870, NO07G00870 (gene) Nannochloropsis oceanica

Overview
NameNO07G00870
Unique NameNO07G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1970
Alignment locationchr7:286936..288905 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna replication factor c subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:286936..288905 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C_dom
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
BLAST of NO07G00870 vs. NCBI_GenBank
Match: EWM27282.1 (dna replication factor c subunit [Nannochloropsis gaditana])

HSP 1 Score: 392.5 bits (1007), Expect = 1.700e-105
Identity = 206/258 (79.84%), Postives = 222/258 (86.05%), Query Frame = 0
Query:   61 MFGASSSGQTSKGLAAARAHQHKVQPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVP 319
            MFG + SGQ  K +A A+A Q KVQPWVEKYRPQGVDDI++QDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPL REVM+ +L +IG +EGASV+++MM+AILTVADG     V T   +  F        P +   +SGG P
Sbjct:    1 MFG-TGSGQGGKDVAVAKAQQTKVQPWVEKYRPQGVDDISYQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLSREVMEARLRAIGAAEGASVTQEMMDAILTVADG----CVLTFFPSPSF----PPCLPPSPSSLSGGFP 249          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: CBN75303.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 363.6 bits (932), Expect = 8.600e-97
Identity = 187/340 (55.00%), Postives = 240/340 (70.59%), Query Frame = 0
Query:   75 AAARAHQHKVQPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMRT 414
            AA +A   ++QPWVEKYRP+ VDD+AHQDEV  TLK AI TG LPHLLFYGPPGTGKTST LA+AR+LFGP+ YR RILELNASDERGIKVVREK+K FAQ  V      AGYPCPPFK+IILDEADTMT +AQ+ALRRTMETYS +TRFCL+CNYVTRIIEPLASRCAKFRF  L +  M  +L  I   E   ++   ++AI+ ++ GDMRKAVT +QSA QFY     +TP+ + +++G +P  V   LW AI+  +++ + A  ++    G+P   +L  + +  V D        + D +KA +   IA A++ +IDG +E LQLLD+ ++  R+
Sbjct:   18 AAQQAPPARLQPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYA-GAEVTPEVLVDIAGKIPAEVKEALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTT------IPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARS 350          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_024515475.1 (replication factor C subunit 2 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 351.3 bits (900), Expect = 4.400e-93
Identity = 177/329 (53.80%), Postives = 233/329 (70.82%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMR 413
            Q WVEKYRP+ V D+AHQDEVV+TL NA++TG LPHLLFYGPPGTGKTST LAV R LFGP+ Y++R+LELNASD+RGI VVR K+K FA   V      + YPCPPFK+IILDEAD+MT +AQ ALRRTMETYSK+TRFC +CNY++RIIEPLASRCAKFRF+ L ++VM  ++L I + EG  +  + +  +  V++GD+R+A+T LQSA + YG S  IT   I  +SG +PD V+  L +A     FD  + +   +   G+P   +  +++D VVE  E      + D +KA +   +A A+K ++DGA ESLQL+DVC+  MR
Sbjct:    5 QQWVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVG--RGVSDYPCPPFKVIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRIIEPLASRCAKFRFKSLNQDVMHGRILHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGSS--ITSKDILSVSGVIPDNVIQSLLQACTSGVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPE------ISDEQKAKICQRLAEADKCLLDGADESLQLMDVCSNTMR 323          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_023757035.1 (replication factor C subunit 2 [Lactuca sativa] >PLY90467.1 hypothetical protein LSAT_9X71120 [Lactuca sativa])

HSP 1 Score: 350.1 bits (897), Expect = 9.900e-93
Identity = 176/332 (53.01%), Postives = 234/332 (70.48%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTV-TGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMRTF 415
            QPWVEKYRP+ V D+AHQDEVV+ L N ++T   PH+LFYGPPGTGKT+T LA+A  L+GPE Y+SR+LELNASDERGI VVR K+K FA   V +G +   GYPCPPFKIIILDEAD+MT +AQ ALRRTMETYSK+TRF  +CNY++RIIEPLASRCAKFRF+PL  E+M T++L I   EG ++  + +  + +++ GD+R+A+T LQ A + +G S  I+   +  +SG VP  VV  L  + +  +FD+   Q   V   G+P   +L +LFDLVVE      S+ V D +KA +   +  ++K ++DGA E LQLLD C+ M++ F
Sbjct:    9 QPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDERGINVVRTKIKNFAAVAVGSGHQGGYGYPCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSTRVLHICNEEGLNLDSEALSTLSSISQGDLRRAITFLQGAARLFGSS--ISSKDLISVSGVVPQEVVGDLLASCKSGSFDSANKQVNNVIAEGYPVSQILSQLFDLVVE------SDDVSDEQKARICRKLGESDKCLVDGADEYLQLLDACSCMIKAF 332          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_006829310.2 (replication factor C subunit 2 isoform X1 [Amborella trichopoda] >XP_011629124.1 replication factor C subunit 2 isoform X2 [Amborella trichopoda] >XP_020517386.1 replication factor C subunit 2 isoform X1 [Amborella trichopoda] >XP_020517387.1 replication factor C subunit 2 isoform X2 [Amborella trichopoda] >XP_020517388.1 replication factor C subunit 2 isoform X2 [Amborella trichopoda])

HSP 1 Score: 347.8 bits (891), Expect = 4.900e-92
Identity = 174/328 (53.05%), Postives = 230/328 (70.12%), Query Frame = 0
Query:   86 PWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMR 413
            PWVEKYRP+ V D+AHQDEVV+ L N +QT  LPH+LFYGPPGTGKT+T LA+A  LFGPE Y+SR+LELNASD+RGI VVR K+K FA   V      +GYPCPP+KIIILDEAD+MT +AQ ALRRT+ETYSK+TRFC +CNYV+RIIEPLASRCAKFRF+PL  E+M +++  I   E  ++  + +  + +++DGD+R+A+T LQSA + +G S  I+   +  +SG +P  VV     A R  +F+    + E +   G+P   +L +LFD+VV      G+  + D +KA +   IA A+K +IDGA E LQLLDV +  MR
Sbjct:   10 PWVEKYRPKQVKDVAHQDEVVRVLSNTLQTANLPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKGFAAVAVGSGNPNSGYPCPPYKIIILDEADSMTEDAQNALRRTLETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRISHICRQESLNLDSEALATLSSISDGDLRRAITYLQSAARLFGSS--ISAKNLISVSGVIPQDVVESFLSACRSGSFEKANKEVENITAEGYPVSQLLSQLFDMVV------GTTDISDEQKARIFNRIAEADKYLIDGADEYLQLLDVASNTMR 329          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_004142636.1 (PREDICTED: replication factor C subunit 4 [Cucumis sativus] >KGN54543.1 hypothetical protein Csa_4G361280 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 6.400e-92
Identity = 172/329 (52.28%), Postives = 234/329 (71.12%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMR 413
            QPWVEKYRP+ V D+AHQDEVV+ L N ++T   PH+LFYGPPGTGKT+T LA+A  LFGPE Y+SR+LELNASD+RGI VVR K+K FA   V+  ++  GYPCPPFKIIILDEAD+MT +AQ ALRRTMET+SK+TRF  +CNY++RIIEPLASRCAKFRF+PL  EVM  ++L IG  EG S+  + +  + +++ GD+R+A+T LQSA + +G S  I+   +  +SG +P  VV  L+ A +   FD    +   V   G+P   +L ++F++V+ED +      ++D +KA +   +A A+K ++DGA E LQLLDV +  M+
Sbjct:    9 QPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSS--ISSKDLVNVSGIIPQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDND------LQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQ 329          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_021284141.1 (replication factor C subunit 4, partial [Herrania umbratica])

HSP 1 Score: 347.4 bits (890), Expect = 6.400e-92
Identity = 173/325 (53.23%), Postives = 229/325 (70.46%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCA 409
            QPWVEKYRP+ V D+AHQDEVV+ L N ++T   PH+LFYGPPGTGKT+T LA+A  LFGPE Y+SR+LELNASDERGI VVR K+K FA   V   +   GYPCPPFKIIILDEAD+MT +AQ ALRRTMETYSK+TRF  +CNY++RIIEPLASRCAKFRF+PL  E+M +++L I   EG  +  + +  +  ++ GD+R+A+T LQ A + +G  +TI+ + +  +SG +P  VV  L+ A +   FD    +   V   GFP   +L +LFD+VVE ++      + D +KA +  G+A A+K ++DGA E LQLLDV +
Sbjct:    9 QPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDERGINVVRTKIKDFAAVAVGSGQPQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICNEEGLHLDSEALSTLSFISQGDLRRAITYLQGAARLFG--STISSEDLLSVSGVIPQEVVEALYAACKSGNFDLANKEVNNVIAEGFPVSQMLSQLFDVVVEVDD------IPDEQKARICKGLAEADKRLVDGADEYLQLLDVAS 325          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: ABK23650.1 (unknown [Picea sitchensis] >ACN41047.1 unknown [Picea sitchensis])

HSP 1 Score: 347.1 bits (889), Expect = 8.400e-92
Identity = 173/329 (52.58%), Postives = 232/329 (70.52%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMRT 414
            Q WVEKYRP+ V D+AHQ+EVV+ L N ++TG LPHLLFYGPPGTGKT+T LA+A  LFGPEY+SR+LELNASD+RGI VVR K+K FA   V      +GY CPPFKIIILDEAD+MT +AQ ALRRTMETYSK+TRFC +CNYV+RIIEPLASRCAKFRF+PL  ++M  ++L I   EG  +    +  + ++++GD+R+A+T LQSA + YG S  I+ + +  +SG VP  VV  L++A +   FD  + +  ++   G P   +  +L+D+VV+      +  + D  KA ++  +A A+K +IDGA E LQLLDV +  MR+
Sbjct:    9 QQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSS--ISSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQ------ATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRS 329          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_021855587.1 (replication factor C subunit 2 [Spinacia oleracea] >KNA05205.1 hypothetical protein SOVF_192210 [Spinacia oleracea])

HSP 1 Score: 346.3 bits (887), Expect = 1.400e-91
Identity = 174/331 (52.57%), Postives = 229/331 (69.18%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMRTF 415
            Q WVEKYRP+ V D+AHQDEVVK L N ++T   PH+LFYGPPGTGKT+T LA+A  LFGPE Y+SR+LELNASD+RGI VVR K+K FA   V   ++  GYPCPP+KIIILDEAD+MT +AQ ALRRTMETYSK+TRF  +CNY++RIIEPLASRCAKFRF+PLP +VM T++L I   EG ++  Q +  + +++ GD+R+A+T LQ A + YG S  IT   +  +SG +P+ VV  L  A +   FD    +   V   G+P   ++ +LFD++VE      ++ + D +KA V   +   +K ++DGA E LQLLDV    MR F
Sbjct:    9 QQWVEKYRPKKVKDVAHQDEVVKVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSAQRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEDVMITRILHICGEEGLNLDSQALSTLSSISQGDLRRAITYLQGAARLYGSS--ITSKDLISVSGVIPEEVVQDLLAACKSGNFDLADKEVNNVISEGYPVSQMISQLFDIIVE------ADDLSDEQKARVFKKLGETDKCLVDGADEYLQLLDVAGNTMRAF 331          
BLAST of NO07G00870 vs. NCBI_GenBank
Match: XP_017644716.1 (PREDICTED: replication factor C subunit 4 [Gossypium arboreum])

HSP 1 Score: 345.9 bits (886), Expect = 1.900e-91
Identity = 173/329 (52.58%), Postives = 231/329 (70.21%), Query Frame = 0
Query:   85 QPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPE-YRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALMMR 413
            QPWVEKYRP+ V D+AHQDEVV+ L N ++T   PH+LFYGPPGTGKT+T LA+A  LFGPE Y+SR+LELNASD+RGI VVR K+K FA   V   ++  GYPCPPFKIIILDEAD+MT +AQ ALRRTMETYSK+TRF  +CNY++RIIEPLASRCAKFRF+PL  E+M +++L I   EG ++  + +  + +++ GD+R+A+T LQ A + +G S  I+   +  +SG +P  VV  L+ A +   FD    +   V   G+P   +L +LFD+VVE      ++ V D +KA +   +A A+K ++DGA E LQLLDV +  MR
Sbjct:    9 QPWVEKYRPKQVRDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSDEIMSSRILHICDQEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSS--ISSKDLLSVSGVIPVEVVEALYAACKSGNFDLANKEVNNVIAEGYPVSQMLSQLFDVVVE------ADDVPDEQKARICKSLAEADKRLVDGADEYLQLLDVASNTMR 329          
The following BLAST results are available for this feature:
BLAST of NO07G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27282.11.700e-10579.84dna replication factor c subunit [Nannochloropsis ... [more]
CBN75303.18.600e-9755.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_024515475.14.400e-9353.80replication factor C subunit 2 isoform X2 [Selagin... [more]
XP_023757035.19.900e-9353.01replication factor C subunit 2 [Lactuca sativa] >P... [more]
XP_006829310.24.900e-9253.05replication factor C subunit 2 isoform X1 [Amborel... [more]
XP_004142636.16.400e-9252.28PREDICTED: replication factor C subunit 4 [Cucumis... [more]
XP_021284141.16.400e-9253.23replication factor C subunit 4, partial [Herrania ... [more]
ABK23650.18.400e-9252.58unknown [Picea sitchensis] >ACN41047.1 unknown [Pi... [more]
XP_021855587.11.400e-9152.57replication factor C subunit 2 [Spinacia oleracea]... [more]
XP_017644716.11.900e-9152.58PREDICTED: replication factor C subunit 4 [Gossypi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000795NSK000795Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00870.1NO07G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624946gene_2403Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100080g2gene3261Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00870.1NO07G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00870 ID=NO07G00870|Name=NO07G00870|organism=Nannochloropsis oceanica|type=gene|length=1970bp
CTTTTCTGTCGCTCAAAACCAAGGCCTTCTTCACCCTAACTAATACTATG
CAATGCGACTCATTTGCACAAATGCTACGAATGGACACCAGAAAGTGAAA
CTGCAGATCCAGCATGTCGGGAAGCGTCGCAGGGTTACAGGAGAAGATGG
CGGTACTGGTGCACAAGAAGAGTTCCATAACAACGCATTTTTCTCAATCC
TCTCTACTCCCTACGCATTACACAGCCACACCATGTTTGGGGCAAGCAGC
AGTGGGCAGACTAGCAAGGGTCTCGCGGCTGCTCGGGCACATCAACACAA
Ggcaagtaacatgagcgcctacagcccacctttcctccctcctgtccccc
ccatcaataccacattttctacagcgattctccatgtgctgcgttgtcca
tgtgcctgcgatgccaagcaatttttctcccattgcatcttttatgtcat
gctctggaccgctgatctgatgtgcttaagtatcttgcgctgactattat
atcccttctctacctcctttccttcacagGTTCAACCTTGGGTGGAGAAG
TACCGTCCCCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAA
AACCCTCAAAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTT
ATGGCCCTCCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGC
TCCTTGTTCGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTC
GGACGAACGAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCC
AATTTACCGTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCC
TTCAAGATTATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCA
GGCAGCTCTAAGGCGGACGATGGAGgtgagatggggaggttaaaagagag
aatggaggggaggaacacagataagatgcatctaggaatgtcatatggct
ggcttgagtccctgactgactcctgtttcctctgcctccttccctccctc
ccccccttcttcctccatctcctcagACGTATTCCAAAATCACCCGCTTC
TGCCTCGTGTGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCG
TTGTGCCAAATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACAC
AACTCCTCTCCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATG
ATGGAAGCTATCTTGACAGTGGCGGACGGgtgcgtgctacccttccttct
tcccttccctccgtccctccctcccaccttcttcgtgcttcccctcattc
ccaccttcttggtcacatgaataagaggcagcacgtccaagttaatcttc
cttcattcttagactctctccctccctccccccctcccctccgtcacccc
cacgcccacagGGACATGCGTAAGGCCGTGACCACACTACAAAGCGCTCA
CCAGTTTTATGGCCAAAGTACCACCATTACACCCGATGCCATTCGAGAGA
TGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCTGTGGGAGGCGATT
CGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCGAGGAGGTGGATAT
GGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTGTTTGACCTCGTGG
TGGAGGATGAGGAGGAGGGAGGGAGTGAGGGGGTGAAGGACAGCGAGAAG
GCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGATGATAATCGATGG
AGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCCCTGATGATGAGGA
CATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATTGAAATACGGGGGT
GCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGGTGTTGTAAGGAGG
AGGGGGGGGGAAGAGATGGA
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protein sequence of NO07G00870.1

>NO07G00870.1-protein ID=NO07G00870.1-protein|Name=NO07G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MRLICTNATNGHQKVKLQIQHVGKRRRVTGEDGGTGAQEEFHNNAFFSIL
STPYALHSHTMFGASSSGQTSKGLAAARAHQHKVQPWVEKYRPQGVDDIA
HQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSR
ILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEAD
TMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLP
REVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYG
QSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFP
TMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASES
LQLLDVCALMMRTFGGRNGRREGGLKYGGADETGAEAGTPMVL*
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Synonyms
Publications