NO07G00850, NO07G00850 (gene) Nannochloropsis oceanica

Overview
NameNO07G00850
Unique NameNO07G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2272
Alignment locationchr7:282271..284542 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:282271..284542 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G00850 vs. NCBI_GenBank
Match: EWM27346.1 (hypothetical protein Naga_100226g11 [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 5.600e-79
Identity = 198/382 (51.83%), Postives = 238/382 (62.30%), Query Frame = 0 
Query:   13 RSRRPRKPNVTSST-----SVALPISTP-SLLLTQLNDDLLGRVFKMAGKWPETRTLCQATHLLTDRLVGGLIINPRVSLDVLKRLLARVGPGLRTLDLSGCAVLDDELLRHLIDHACPHLTHLSVNYCAQLTPAVTPFLFRVPHVALRGCWRLLSPSPSLPSDAVLELQLLALQQNDYHRHDGVAKHFEFASPANRAIEEEGMEGGSVEGGENVPADVXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----------------DRQPLMDLQAFAGMVYERLQPMLGCHSFSMRQFQYESPDRACFLVRTTQGRKVTAGAAVGGTVGXXXXXXXXXXXXLWLLSRQAEGQLKDCWMTDAIVSAEHGLLSFLNLPLCAEDRG 373
            R+RR R  +  SS      + A  ++ P SLLLT+LNDDLL RV     +W   R++  +T   +D LV  L I P   L VL R++ RVG  +  LDL+G   L+D  LRH+++  CP L HL +NYC QLTPAV P L RVP VA+RGCWRLL+PSPSL SD VLELQLLALQQND HRHDGVAK+FEFAS ANR +   G +G             XXXXXXXXXXXXXXXXXXX         V                 R PL+ L+AF  +VY+RLQP+LGC SFS+R+ QYES DRACFLVRTT  +  + G +   ++             LWLLSRQ EG+ K CW+TDAI+SAEHGLLS  NLPLC E RG
Sbjct:   45 RARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLV-GPGQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAF-HVVYDRLQPLLGCQSFSIRRLQYESVDRACFLVRTTVKKVASTGTSASVSMA-AGDGFSRQQHYLWLLSRQKEGEWKKCWLTDAIISAEHGLLSLWNLPLCEEGRG 423
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BLAST of NO07G00850 vs. NCBI_GenBank
Match: XP_005855065.1 (hypothetical protein NGA_0354000 [Nannochloropsis gaditana CCMP526] >EKU21301.1 hypothetical protein NGA_0354000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.7 bits (522), Expect = 2.700e-49
Identity = 110/199 (55.28%), Postives = 134/199 (67.34%), Query Frame = 0 
Query:   13 RSRRPRKPNVTSST-----SVALPISTP-SLLLTQLNDDLLGRVFKMAGKWPETRTLCQATHLLTDRLVGGLIINPRVSLDVLKRLLARVGPGLRTLDLSGCAVLDDELLRHLIDHACPHLTHLSVNYCAQLTPAVTPFLFRVPHVALRGCWRLLSPSPSLPSDAVLELQLLALQQNDYHRHDGVAKHFEFASPANRAI 206
            R+RR R  +  SS      + A  ++ P SLLLT+LNDDLL RV     +W   R++  +T   +D LV  L I P   L VL R++ RVG  +  LDL+G   L+D  LRH+++  CP L HL +NYC QLTPAV P L RVP VA+RGCWRLL+PSPSL SD VLELQLLALQQND HRHDGVAK+FEFAS ANR +
Sbjct:    4 RARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLV 202
The following BLAST results are available for this feature:
BLAST of NO07G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27346.15.600e-7951.83hypothetical protein Naga_100226g11 [Nannochlorops... [more]
XP_005855065.12.700e-4955.28hypothetical protein NGA_0354000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000847NSK000847Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00850.1NO07G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100226g11gene3218Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00850.1NO07G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00850 ID=NO07G00850|Name=NO07G00850|organism=Nannochloropsis oceanica|type=gene|length=2272bp
TCCTTGATTTACCCGTTTTGTATTCCTCTTTTCTGTCCTTTGCGGCAAAA
GGCAGGCATGATGAAAAGCTTTCAAAAGTGGATGTCTACTGCTGTTTCTT
CCTGGATTCCGTCGAGAGGTTCATGCTTCTGATGACGAAGCATACGTCGG
AGAGCGGAGAGATATCTCTTCCACTCTTTCTGACACGCACACACACATTC
AAGCCTGATTGGACAAAACAAAATGCACCAAAAAGCCTACCCCTACGGGC
ACCCCGTCGCTCTCACTCTCGCTAATTCAGTTTTGCGGCGGCGACGCGCG
TCGCGTCGATCCGAGAGCCTTCAGCGATCCTAACCCTAAAAGCGTGACGC
CGACATCACAACTACTTCCTGCTGTTTGCCGTGCATGCTTTCAAACAAAC
GAAAGCGCGGCGCCCCTTCCTTGTTCCACAGATTGGACGCCTACGTAGAA
GACGATGAGCTGGGAAGAAAGTTGTTGTCCGTCAATGCCTTGACCTGTCG
GCCTTTCAAACATCATGCACATATTTCCTGGCCTGGCAGACCTTGGCTCG
TCTGATAGCCGTCCTGCTGATGCTTGGCCCACAGCGTGTCAAGAGGATGG
CCAGGAAAAGAGAAAACACGAAACTTGTCTCCCTTGTTAGCTCTCCTGAC
ACTCACATAGCATGTCTCCTTACACATGTCTTCCACAGCTCACGCTCGTC
CTTTTTGGGGTGGTGTCTACATCTACATCAAAGAGGGGAAGAGGGGAGGA
GCAGCAGGCCCTCCCAAAAAAATAAATAGGACGGAGCAACAAACCGGCAG
CAGTACCCATCCTTACCGCACACTTTCGCCGCCATGTACAGCAGCAAGGT
GGCAGTGACGGCAAGGAAGCGTTCTCGCAGGCCACGCAAACCCAACGTCA
CCTCTTCTACCTCTGTCGCCCTCCCCATTTCCACACCCTCCCTTCTCCTG
ACGCAGCTCAATGACGACCTCTTGGGTCGCGTTTTCAAAATGGCAGGGAA
GTGGCCCGAAACGCGCACTCTTTGCCAAGCTACACACCTTCTCACAGATC
GTCTCGTGGGCGGGTTGATAATTAATCCTCGTGTTTCCCTCGATGTCCTT
AAGCGGCTCCTTGCACGTGTCGGGCCTGGTCTCCGCACACTCGATTTGTC
AGGATGTGCTGTTTTGGACGATGAACTCCTACGGCATCTTATCGACCACG
CCTGCCCGCATCTTACGCACCTCTCCGTTAATTACTGCGCCCAGTTGACC
CCGGCCGTGACTCCTTTCCTGTTCCGCGTGCCTCATGTGGCGCTAAGGGG
ATGTTGGCGTCTTTTAAGTCCCTCCCCTTCCCTCCCTTCCGACGCAGTAC
TAGAACTTCAATTGCTGGCATTGCAACAAAACGATTACCACCGTCACGAT
GGCGTGGCGAAGCATTTTGAATTTGCCTCGCCAGCAAACCGGGCGATTGA
GGAGGAGGGGATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCTG
CGGACGTGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATCG
ACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATGGTCTATGAGCGCC
TTCAACCAATGTTAGGGTGCCACTCCTTCTCCATGCGTCAATTCCAGTAC
GAGTCCCCCGATCGTGCCTGCTTTCTAGTCCGCACGACGCAAGGAAGAAA
AGTTACTGCTGGTGCTGCGGTTGGCGGCACTGTGGGGGGAGGCCATGGCA
ATCATCAGCATCACCAGCATTACCTGTGGTTGTTGTCGAGGCAAGCGGAA
GGTCAGTTGAAGGACTGCTGGATGACTGACGCCATCGTCTCGGCGGAGCA
CGGGTTGCTGAGTTTTTTAAACCTTCCCTTATGTGCTGAGGATAGGGGTG
GAAGAGGGATGGGGGGGCGGGGGGCACAGGCTGGTGGAGTGTGGTTGCAG
CAGTGCGCGGCCGGTGGGGCTGATGGCGTGGAGTAGGGGCAGCCGTAGAG
TAAATTGATTCGTGTGACGGAATCGTGAAAGAAAAATAGGGACGGTAGAG
AAGAAACGATTTCTATGAAATAAATTTTGATCGAATGAGGGGATGGTAGA
GTAAATTTTGACGAAGGGAGGGGAGGTCGGGGATCCGGTTGAGCGTACGT
TCCGCAATTTTGGAGAATTAGAAGCTAGCGGTTCAGGTGAAAACAAAGAA
AGACATGCCGTTGTAGCTATCT
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protein sequence of NO07G00850.1

>NO07G00850.1-protein ID=NO07G00850.1-protein|Name=NO07G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MYSSKVAVTARKRSRRPRKPNVTSSTSVALPISTPSLLLTQLNDDLLGRV
FKMAGKWPETRTLCQATHLLTDRLVGGLIINPRVSLDVLKRLLARVGPGL
RTLDLSGCAVLDDELLRHLIDHACPHLTHLSVNYCAQLTPAVTPFLFRVP
HVALRGCWRLLSPSPSLPSDAVLELQLLALQQNDYHRHDGVAKHFEFASP
ANRAIEEEGMEGGSVEGGENVPADVQQQQQQQQQQQQQQQQQEEEEEEER
EEDVDRQPLMDLQAFAGMVYERLQPMLGCHSFSMRQFQYESPDRACFLVR
TTQGRKVTAGAAVGGTVGGGHGNHQHHQHYLWLLSRQAEGQLKDCWMTDA
IVSAEHGLLSFLNLPLCAEDRGGRGMGGRGAQAGGVWLQQCAAGGADGVE
*
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Synonyms
Publications