NO07G00780, NO07G00780 (gene) Nannochloropsis oceanica

Overview
NameNO07G00780
Unique NameNO07G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2661
Alignment locationchr7:264756..267416 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidase aspartic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:264756..267416 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001995Peptidase_A2_cat
Homology
BLAST of NO07G00780 vs. NCBI_GenBank
Match: EWM27333.1 (Peptidase aspartic [Nannochloropsis gaditana])

HSP 1 Score: 620.5 bits (1599), Expect = 7.400e-174
Identity = 427/839 (50.89%), Postives = 534/839 (63.65%), Query Frame = 0
Query:   10 PRTIEEVGTATLPFSRADFPPTPDTQFPASVDYLLTLSVLIGGKSFEFTVDTTASVNLVTREVADALNSVSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEIALDILLPSTPGNVHVYTRAVVSDVWGGIGAGCLGLPFLRSFGAVEINLRTMEGRVKSPKGGPTVLKGIEELKKSEGGREGEREGSGGRKGWTVDFAPLTIKMDARMALEAYQKGEXXXXXXXXXXXXXXXXXXXXXPEVWIVDVHLDGSVAGIPAIVDLGCQSSILNWKAAKALGYRLEKKGGSEEGREGGEEGRVVTPTMAGEEEGVEGAGGIEVCFAEETRLSLGSGAPGSTSSKESGSSSSYIEIPSRRLAIADLPVFAYAGLGNTPAMVLGLDVLGSAADRLILDWAQRRMTLEGPLLPIRRAMATLELPLVKCVSEKVVLGTRETGGGKEMGSSIFGVPWQYGVPAVMEEGGGKGGKEVLFMLDTAAGGTLLRKEMWEMCA---AGKEXXXXXXXXXXXXXEIVRMAGPGAGGEVRARKVSINLYLGGTSVREGHEMSIGAAVLLGGGXXXXXXXXXXWSSSERFDGILGQSFFGAFEIVDFDWRHAMLRCYERGK-EGEAGKEGGLALEGLLDFWPVSSS---------PSSTPAGAARLRKGVAENLLGSNSLLSVTVILNNQINKPVVGLLDTGAQTSVLNWAAARALGIEK----GRGGRAKESQIVALGLDGKPVKLMYAKFDEVAFEGGRDG---GGLDVVPNHTGGKNLAIADVPGLAKLGLLETPAMVVGLDLLEGGRGGRLVFDM 829
            P +++E+G A++ F+RADFPPTPDT FPASVDYLLTL   IGG  FEFT+DTTASVNLVT+EV +A  S+  S              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +E +A ++ + S+P  + V  +AVVS+ W G+G GCLGLPFLRSFGAVEI+ R M+GR+   + GP V+ G++  ++SE G +G+ EG+     W +DFAPL IKM+A+MALEA  +GE                     PEVW+VDVHLDGS AGIPAIVDLGCQ+SILNWKAA+ALGYR                 +  +P  AG  E V+   GIEV FA++T LSLG                  + +P+R LAIADLPVFAYAGL   PAMVLGLDVLGS  D L+LDW+QR +T+ GPLLP++R +A +++PL++   E+ V   R   GG+          +QYGVPAV+    G   KEV+ M+DTAAG   + ++ WE  A    G+E             ++V MAG G G  ++AR+ S+ ++LGG+SVREG+E++   AVL GG               +RFDG LGQSFFGA+ +VDFDWRHAMLRCY   K EGE        L+GLLDFWP S                   ARL  GVA + LG N+L+SVTV++N + + P  GL+DTG  TSVLNWAAARALG+ K    G    A+ES +V +GLDG P ++  A+FDEVAFEG  +G   GG  VVP   GG  LA+AD+ GL +LGLLETPAMVVGLDLLEGGRGGRL+ D+
Sbjct:   80 PFSLQELGVASIRFNRADFPPTPDTLFPASVDYLLTLPATIGGVPFEFTLDTTASVNLVTKEVVEA--SLGTSPKASGKKGFGNEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGSLMEAEGVAFEMTVSSSPPGLLVPVKAVVSEEWTGVGGGCLGLPFLRSFGAVEIDWRRMQGRLWGGRDGPQVVDGLDNWRESEEGGKGQ-EGA----EWKIDFAPLRIKMNAQMALEALGQGE----------EEEDKNEEGTCPEVWVVDVHLDGSEAGIPAIVDLGCQASILNWKAAEALGYR-----------------KPTSPGTAGAVE-VQAVEGIEVAFADKTSLSLG--------------EPHGVRVPARPLAIADLPVFAYAGLEQVPAMVLGLDVLGSVQDTLVLDWSQRCLTVGGPLLPVKRNLAAVDMPLIR--REQAV--ERAPAGGQ---------AYQYGVPAVL----GGTEKEVVLMVDTAAGCMAVSQKAWEAYADAQGGRE-------GGPAEGQVVDMAGIGPGKGLKARRQSVTMHLGGSSVREGYELTTEVAVLEGGRE----------GGKDRFDGFLGQSFFGAYAVVDFDWRHAMLRCYSEEKTEGEK----ATTLDGLLDFWPPSPQXXXXXXXXXXXXXXXXXARLHTGVARDRLGPNALMSVTVVVNGRKDVPCCGLIDTGVFTSVLNWAAARALGVGKEGEIGVTVPARESGMVVVGLDGAPTEVTLARFDEVAFEGEAEGGREGGAVVVPTENGGVTLAVADLLGLQQLGLLETPAMVVGLDLLEGGRGGRLILDL 831          
BLAST of NO07G00780 vs. NCBI_GenBank
Match: EWM24538.1 (Peptidase aspartic [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-11
Identity = 63/222 (28.38%), Postives = 97/222 (43.69%), Query Frame = 0
Query:  617 DGILGQSFFGAFEIVDFDWRHAMLRCYERGKEGEAGKEGGLALEGLLDFWPVSSSPS-STPAGAARLRKGVAENLLGSNSLLSVTVILNNQINKPVVGLLDTGAQTSVLNWAAARALGIEKGRGGRAKESQIVALGLDGKPVKLMYAKFDEVAFEGGRDGGGLDVVPNHTGGKNLAIADVPGLAKLGLLETPAMVVGLDLLEG--GRGGRLVFDMKGGLLYI 836
            DG+LG  +   F +VDFDW    L  Y           G L L        V  +PS S  A    +R+     +   N  L+         + PV  ++D GA  S++NW AA+  G+E+    R   + +   G+DG  + +    F+ ++ E G       V  N    K + +AD+P  A +G    P  VVG+D+L G      R+VFD +  +LY+
Sbjct:  312 DGLLGVVWMRYFGLVDFDWASQSLTVYPYDVRDRTSGSGDLGL--------VLETPSPSLLARGVNMRQDPMSGIYFVNLFLTPP-----GASPPVPAIVDLGAGLSMVNWRAAKQAGVERESSSRVVRNAMSVWGIDGTTLPVDLCDFEALSLENG-------VTLNR---KRIGVADLPAFALIGYGSKPVGVVGMDVLGGTDPNNRRIVFDFRRSMLYM 510          
BLAST of NO07G00780 vs. NCBI_GenBank
Match: CEL94712.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 81.3 bits (199), Expect = 1.600e-11
Identity = 84/313 (26.84%), Postives = 131/313 (41.85%), Query Frame = 0
Query:  510 GKEVLFMLDTAAGGTLLRKE-MWEMCAAGKEXXXXXXXXXXXXXEIVRMAG-PGAGGEVRARKVSINLYLGGTSVREGHEMSIGAAVLLGGGXXXXXXXXXXWSSSERFDGILGQSFFGAFEIVDFDWRHAMLRCYERGKEGEAGKEGGLALEGLLDFWPVSSSPSSTPAGAARLRKGVAENLLGSNSLLSVTVILNNQINKPVVGLLDTGAQTSVLNWAAARALGIEKGRGGRAKESQIVALGLDGKPVKLMYAKFDEVAFEGGRDGGGLDVVPNHTGGKNLAIADVPGLAKLGLLETPAMVVGLDLLEGGR 821
            G+ + F++DT +  ++L  + +  + AA KE             E    AG P   G  R   V +     G     G E+S+ AAVL   G                  G+LG  F   F  +D D+    ++ Y +G+   A      A     D   +++  SS P                   LL++   L+ Q   PV  +LD G+  S++NW AAR++GI++   G  +   + A G+DG P+++  A F     +G    G L           L +AD P  A+ GL + PAM++GLD+L  GR
Sbjct:   20 GEYLRFLVDTGSTQSILTSDTVSSLGAALKE----------QDRETYTAAGLPVKTGVARVEGVRV-----GGGAEGGMEVSLDAAVLTQAGVLPAGVA-----------GLLGLDFLSQFGAIDVDFLEGKIKLYPKGQAAAAKAALQEAAADRKDLSLIATPVSSLP-----------------GPLLAIDGALSEQ-EAPVTAVLDLGSTYSIVNWPAARSVGIDREAEG-VQRGVMKATGIDGAPIEVDRAAFPLCGVKG--TDGALKAFKRDV---KLNVADFPWFARAGLADKPAMLLGLDVLGAGR 282          
BLAST of NO07G00780 vs. NCBI_GenBank
Match: KXZ54893.1 (hypothetical protein GPECTOR_4g965 [Gonium pectorale])

HSP 1 Score: 65.5 bits (158), Expect = 9.200e-7
Identity = 54/158 (34.18%), Postives = 72/158 (45.57%), Query Frame = 0
Query:  678 GAARLRKGVAENLLGSNSLLSVTVILNNQINKPVVGLLDTGAQTSVLNWAAARALGIEKGRGGRAKESQIVALGLDGKPVKLMYAKFDEVAFEGGRDGGGLDVVPNHTGGKNLAIADVPGLAKLGLLETPAMVVGLDLLEGGRGGRLVFDMKGGLLYI 836
            G ARL   V +       LLSV   LN     P +  LD GA  S+LNW AA   G+ +G  G     Q    G DG+    +   F +V    G +G     VP  T    L + D+P  A LG  E+P MV+G DLL      RLV D++   +++
Sbjct:  210 GMARLSCDVQK-----GGLLSVPASLNGSARFPAI--LDLGANFSILNWPAAELAGVRRGEDGADSLVQEQVAGTDGRRGDRVRRGFLDVVL--GEEGN--PFVP--TRPMALMVRDIPSFATLGFGESPVMVLGYDLLS---ADRLVLDLRNQRIFV 351          
The following BLAST results are available for this feature:
BLAST of NO07G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27333.17.400e-17450.89Peptidase aspartic [Nannochloropsis gaditana][more]
EWM24538.11.200e-1128.38Peptidase aspartic [Nannochloropsis gaditana][more]
CEL94712.11.600e-1126.84unnamed protein product [Vitrella brassicaformis C... [more]
KXZ54893.19.200e-734.18hypothetical protein GPECTOR_4g965 [Gonium pectora... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000840NSK000840Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00780.1NO07G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637335gene_2395Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100892g2gene3225Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00780.1NO07G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00780 ID=NO07G00780|Name=NO07G00780|organism=Nannochloropsis oceanica|type=gene|length=2661bp
ATGGACAACGATAATGCACCCTCCCGTCCCCGCACTATTGAGGAAGTGGG
CACGGCCACCCTACCATTCAGTCGAGCTGACTTTCCCCCAACGCCCGATA
CGCAATTCCCAGCCTCTGTCGACTACCTATTGACCCTCTCTGTTCTTATT
GGTGGAAAATCGTTTGAATTCACTGTGGATACAACAGCCTCAGTTAATCT
GGTGACGAGGGAGGTGGCGGATGCTCTAAATTCTGTATCTGAATCTTCTC
CAGCGGTGGCAGCAGCAGCGGCGGGGGGAAAGAAGGGATTTGGTGGTGGA
GGAGGGGGTGGAGGAGGAGGAAAGGTTAAGGGGAAGAAGGGTGACAAGAA
GAAGCAGAAGAAACAAAAGCGTAAGCAGGAGGAAGAAGAAAAAGGCGGGA
TGGGTTTGGACGAGGACGAAGAGGAATTGCTCAAGTCGGAGGAAATCGCG
TTGGACATCCTGTTACCGTCCACGCCGGGTAATGTGCATGTGTATACTCG
AGCCGTCGTCTCCGATGTCTGGGGGGGAATCGGCGCAGGGTGCTTAGGTC
TCCCCTTCTTGAGATCCTTTGGTGCGGTGGAGATTAATTTGAGGACGATG
GAAGGGAGGGTGAAGAGCCCTAAAGGAGGCCCGACGGTCTTGAAGGGAAT
AGAAGAGCTGAAGAAGAGTGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAT
CGGGGGGAAGGAAGGGGTGGACGGTAGATTTTGCACCGTTGACAATCAAG
ATGGATGCAAGGATGGCGTTGGAGGCGTATCAGAAGGGAGAGACGGAGGA
GGAGGATTCCGACGAGGAGGACGGGGAGGGAGGGGGGGAGAGGGGGGGGG
AACGGCCAGAGGTGTGGATTGTGGACGTGCATTTGGACGGAAGCGTGGCG
GGTATCCCGGCAATTGTTGACCTGGGCTGTCAGAGTAGCATTTTGAACTG
GAAGGCAGCCAAGGCCCTGGGATATCGATTGGAGAAGAAGGGAGGGAGCG
AGGAAGGGAGGGAGGGGGGGGAAGAAGGCCGGGTGGTGACCCCGACGATG
GCGGGGGAGGAGGAGGGGGTGGAGGGTGCTGGGGGTATTGAGGTTTGTTT
CGCAGAGGAGACGAGGTTGAGCTTGGGGAGTGGCGCGCCCGGGAGTACCA
GCAGCAAGGAGAGTGGCAGCAGCAGTAGTTATATTGAGATTCCGAGTCGG
CGACTGGCCATCGCGGATTTGCCCGTATTTGCTTACGCCGGATTGGGCAA
CACGCCCGCGATGGTCCTAGGTCTTGATGTCCTAGGAAGTGCCGCCGACC
GCCTGATTCTCGATTGGGCGCAACGTCGGATGACGTTGGAGGGACCGTTA
CTGCCCATCAGGCGGGCTATGGCCACCTTGGAGCTACCGCTCGTGAAGTG
TGTGTCGGAAAAAGTGGTGTTGGGAACGAGGGAGACGGGAGGAGGGAAGG
AGATGGGAAGTTCGATTTTTGGGGTTCCATGGCAGTATGGCGTGCCCGCG
GTGATGGAGGAGGGAGGGGGGAAGGGAGGGAAGGAGGTGCTGTTCATGCT
CGATACTGCGGCGGGAGGAACGTTGTTGAGGAAGGAGATGTGGGAGATGT
GTGCTGCAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAG
GAGGACGAAATTGTGCGGATGGCGGGGCCGGGGGCGGGTGGGGAGGTGAG
GGCGAGGAAAGTTTCCATTAATCTGTACTTGGGAGGAACGAGCGTGAGGG
AGGGACATGAGATGTCCATAGGTGCTGCCGTCCTGCTCGGAGGAGGAGAG
GAGGGAGGAAGGGAGGGAGGAGGGGAATGGTCGAGCAGTGAGAGATTCGA
TGGGATTCTGGGACAGAGTTTTTTCGGGGCCTTCGAGATTGTGGACTTCG
ATTGGAGACATGCCATGTTGCGGTGTTACGAGCGAGGGAAGGAGGGCGAG
GCAGGGAAGGAGGGAGGGTTGGCCTTGGAAGGGTTGTTGGATTTCTGGCC
TGTGTCTTCTTCCCCCTCCTCCACACCAGCCGGCGCAGCAAGGTTAAGGA
AAGGTGTGGCAGAGAACCTCCTCGGTTCGAATTCCCTCCTGTCCGTAACG
GTCATTTTAAACAACCAAATCAATAAACCGGTGGTGGGACTGCTTGACAC
AGGCGCACAAACCAGCGTGCTGAATTGGGCTGCAGCCCGGGCATTAGGCA
TTGAGAAAGGGAGGGGGGGGAGGGCGAAGGAGTCTCAGATCGTCGCCTTG
GGGCTGGATGGGAAGCCGGTCAAGCTTATGTACGCCAAATTTGATGAGGT
GGCATTTGAGGGAGGGAGGGATGGAGGGGGTTTGGACGTGGTGCCAAATC
ACACGGGGGGGAAGAATCTGGCCATTGCAGATGTACCAGGATTGGCAAAA
TTGGGCTTATTGGAGACGCCGGCCATGGTTGTAGGGTTGGATTTGTTGGA
GGGAGGGAGGGGGGGAAGACTGGTGTTTGACATGAAGGGGGGCCTGCTTT
ACATTGCTTAGGGACAGACGTGCGTGGTGGTGAGGAGGTGTATGCAGGAT
TTTATTCCTGTGACAGCTTGAGCATGAAGCTTTGGAAGATCGCTTTCGAT
CCTGATAGCGTCAGACTGGATTGCCTGGGAGGGAGGGGGGGAAGGCCAGA
AGGGGGGAAGG
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protein sequence of NO07G00780.1

>NO07G00780.1-protein ID=NO07G00780.1-protein|Name=NO07G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=837bp
MDNDNAPSRPRTIEEVGTATLPFSRADFPPTPDTQFPASVDYLLTLSVLI
GGKSFEFTVDTTASVNLVTREVADALNSVSESSPAVAAAAAGGKKGFGGG
GGGGGGGKVKGKKGDKKKQKKQKRKQEEEEKGGMGLDEDEEELLKSEEIA
LDILLPSTPGNVHVYTRAVVSDVWGGIGAGCLGLPFLRSFGAVEINLRTM
EGRVKSPKGGPTVLKGIEELKKSEGGREGEREGSGGRKGWTVDFAPLTIK
MDARMALEAYQKGETEEEDSDEEDGEGGGERGGERPEVWIVDVHLDGSVA
GIPAIVDLGCQSSILNWKAAKALGYRLEKKGGSEEGREGGEEGRVVTPTM
AGEEEGVEGAGGIEVCFAEETRLSLGSGAPGSTSSKESGSSSSYIEIPSR
RLAIADLPVFAYAGLGNTPAMVLGLDVLGSAADRLILDWAQRRMTLEGPL
LPIRRAMATLELPLVKCVSEKVVLGTRETGGGKEMGSSIFGVPWQYGVPA
VMEEGGGKGGKEVLFMLDTAAGGTLLRKEMWEMCAAGKEGGKEGGKEGGK
EDEIVRMAGPGAGGEVRARKVSINLYLGGTSVREGHEMSIGAAVLLGGGE
EGGREGGGEWSSSERFDGILGQSFFGAFEIVDFDWRHAMLRCYERGKEGE
AGKEGGLALEGLLDFWPVSSSPSSTPAGAARLRKGVAENLLGSNSLLSVT
VILNNQINKPVVGLLDTGAQTSVLNWAAARALGIEKGRGGRAKESQIVAL
GLDGKPVKLMYAKFDEVAFEGGRDGGGLDVVPNHTGGKNLAIADVPGLAK
LGLLETPAMVVGLDLLEGGRGGRLVFDMKGGLLYIA*
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Synonyms
Publications