NO07G00770, NO07G00770 (gene) Nannochloropsis oceanica

Overview
NameNO07G00770
Unique NameNO07G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr7:263141..264088 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription initiation factor tfiid subunit 12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:263141..264088 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0000124SAGA complex
GO:0046695SLIK (SAGA-like) complex
GO:0005669transcription factor TFIID complex
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR037794TAF12
IPR003228TFIID_sub
Homology
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: EWM27332.1 (transcription initiation factor tfiid subunit 12 [Nannochloropsis gaditana])

HSP 1 Score: 170.2 bits (430), Expect = 4.900e-39
Identity = 82/102 (80.39%), Postives = 93/102 (91.18%), Query Frame = 0 
Query:    1 MALPPNQTLDKWKQAHNTSGGPIASTKQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIG 103
            MALPPNQTL+KWK  HN +   + STKQRRLQ+LL+EVDP+G+FRLDGE EEIVLYLIE FMTSVATH+AQ+ARHRG+TAIEHSDVAFTLLKQWNMAVPA+G
Sbjct:    1 MALPPNQTLEKWKATHNAT-NRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: XP_014677164.1 (PREDICTED: transcription initiation factor TFIID subunit 12-like [Priapulus caudatus] >XP_014677165.1 PREDICTED: transcription initiation factor TFIID subunit 12-like [Priapulus caudatus] >XP_014677166.1 PREDICTED: transcription initiation factor TFIID subunit 12-like [Priapulus caudatus])

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 0 
Query:   15 AHNTSGGPIASTKQ----RRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            AH+ +G     T Q    RRLQ L+ E+DP+   +LD + EE++L + + F+ ++ THS QLA+HR A++IE  DV   L + WNM +P  G+
Sbjct:   89 AHSATGSGGGDTGQILNKRRLQELVREIDPNE--QLDDDVEEVLLQIADDFIENIVTHSCQLAKHRQASSIEVRDVQLHLERNWNMWIPGFGS 179
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: GAX12299.1 (transcription initiation factor TFIID subunit 12 [Fistulifera solaris])

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-8
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   13 KQAHNTSGGP-IASTKQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIG 103
            ++ H + GGP I      R+Q+LL+ +DP+  + LD  AE  VL L   F+T V   S +LA+HRG+ A++  DV + L KQW + +P +G
Sbjct:  305 EEGHLSLGGPHIVPPVGERIQSLLNTIDPN--YSLDSAAEAQVLQLANDFLTKVTQQSFELAQHRGSPALDVQDVQWILAKQWGIVIPGLG 393
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: GAX21095.1 (transcription initiation factor TFIID subunit 12 [Fistulifera solaris])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   13 KQAHNTSGGP-IASTKQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIG 103
            ++ H + GGP I      R+Q+LL+ +DP+  + LD  AE  +L L   F+T V   S +LA+HRG+ A++  DV + L KQW + +P +G
Sbjct:  305 EEGHLSLGGPQIVPPVGERIQSLLNTIDPN--YTLDSAAEAQILQLANDFLTKVTQQSFELAQHRGSPALDVQDVQWILAKQWGIVIPGLG 393
[Close]
BLAST of NO07G00770 vs. NCBI_GenBank
Match: EFX66506.1 (hypothetical protein DAPPUDRAFT_302673 [Daphnia pulex])

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:   30 RLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            RLQ L+ EVDP+   +LD E EE++L + + F+ S    S QLA+HR ATA++ +DV   L +QWNM +P  GT
Sbjct:   37 RLQDLVREVDPNE--QLDEEVEELLLQIADDFIESTVNASCQLAKHRQATALDVTDVQMHLERQWNMWIPGFGT 108
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: KZS10286.1 (Transcription initiation factor TFIID subunit 12 [Daphnia magna])

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:   30 RLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            RLQ L+ EVDP+   +LD E EE++L + + F+ S    S QLA+HR ATA++ +DV   L +QWNM +P  GT
Sbjct:   36 RLQDLVREVDPNE--QLDEEVEELLLQIADDFIESTVNASCQLAKHRQATALDVTDVQMHLERQWNMWIPGFGT 107
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: XP_019617306.1 (PREDICTED: transcription initiation factor TFIID subunit 12-like [Branchiostoma belcheri])

HSP 1 Score: 67.4 bits (163), Expect = 4.400e-8
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:   28 QRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            +RRLQ L+ E+DP  T +LD + EE++L + + F+ +V T S QLA+HR +  +E  DV   L + WNM +P  GT
Sbjct:  119 KRRLQDLVREIDP--TEQLDDDVEELLLQVADDFIENVVTSSCQLAKHRKSNTLETKDVQMYLERNWNMYIPGFGT 192
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: KPM04283.1 (Transcription initiation factor TFIID subunit 12-like protein [Sarcoptes scabiei])

HSP 1 Score: 67.0 bits (162), Expect = 5.800e-8
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:    5 PNQTLDKWKQAH------NTSGGPIASTKQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGTS 105
            PN  +    + H      + S  PIAS  ++RLQ L+ EVDP+   +L+G+ E+++L L + F+ ++ + +  LA+HR +  ++  DV F L   WNM +P  G +
Sbjct:   10 PNDNMHSGAEYHQKVLNTSKSSTPIASLDRQRLQELVSEVDPNE--QLEGDVEDVLLSLADDFIETLVSQACMLAKHRKSDQLDVKDVLFALEFNWNMWIPGFGVN 113
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BLAST of NO07G00770 vs. NCBI_GenBank
Match: NP_079855.2 (transcription initiation factor TFIID subunit 12 [Mus musculus] >XP_006539172.1 PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Mus musculus] >XP_006539173.1 PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Mus musculus] >XP_006539170.2 PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Mus musculus] >XP_017175839.1 PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Mus musculus] >XP_021055931.1 transcription initiation factor TFIID subunit 12 isoform X2 [Mus pahari] >Q8VE65.1 RecName: Full=Transcription initiation factor TFIID subunit 12; AltName: Full=Transcription initiation factor TFIID 20 kDa subunits; Short=TAFII-20; Short=TAFII20 >AAH19668.1 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Mus musculus] >BAE21426.1 unnamed protein product [Mus musculus] >EDL30115.1 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Mus musculus])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:    5 PNQTLDKWKQAHNTSGGPIAST---------------KQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            P  T  +   A++T+ G IA T                +++LQ L+ EVDP+   +LD + EE++L + + F+ SV T + QLARHR ++ +E  DV   L +QWNM +P  G+
Sbjct:   22 PASTPPQGSMANSTTVGKIAGTPGTGGRLSPENNQVLTKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGS 133
[Close]
BLAST of NO07G00770 vs. NCBI_GenBank
Match: XP_021055930.1 (transcription initiation factor TFIID subunit 12 isoform X1 [Mus pahari])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:    5 PNQTLDKWKQAHNTSGGPIAST---------------KQRRLQALLDEVDPSGTFRLDGEAEEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIGT 104
            P  T  +   A++T+ G IA T                +++LQ L+ EVDP+   +LD + EE++L + + F+ SV T + QLARHR ++ +E  DV   L +QWNM +P  G+
Sbjct:   75 PASTPPQGSMANSTTVGKIAGTPGTGGRLSPENNQVLTKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGS 186
The following BLAST results are available for this feature:
BLAST of NO07G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27332.14.900e-3980.39transcription initiation factor tfiid subunit 12 [... [more]
XP_014677164.11.100e-940.86PREDICTED: transcription initiation factor TFIID s... [more]
GAX12299.11.200e-839.56transcription initiation factor TFIID subunit 12 [... [more]
GAX21095.11.500e-838.46transcription initiation factor TFIID subunit 12 [... [more]
EFX66506.13.400e-847.30hypothetical protein DAPPUDRAFT_302673 [Daphnia pu... [more]
KZS10286.13.400e-847.30Transcription initiation factor TFIID subunit 12 [... [more]
XP_019617306.14.400e-843.42PREDICTED: transcription initiation factor TFIID s... [more]
KPM04283.15.800e-833.02Transcription initiation factor TFIID subunit 12-l... [more]
NP_079855.27.600e-835.09transcription initiation factor TFIID subunit 12 [... [more]
XP_021055930.17.600e-835.09transcription initiation factor TFIID subunit 12 i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000839NSK000839Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00770.1NO07G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580208gene_2394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100892g1gene3226Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00770.1NO07G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00770 ID=NO07G00770|Name=NO07G00770|organism=Nannochloropsis oceanica|type=gene|length=948bp
ATGGCCCTGCCCCCTAACCAAACGCTGGACAAATGGAAGCAAGCGCACAA
CACCTCCGGTGGCCCCATCGCCAGCACCAAGCAACGTAGGCTGCAGGCGT
TGCTGGATGAAGTCGACCCGTCCGGCACGTTTCGTCTGGACGGCGAGGCG
GAGGAGATAGTGTTGTATCTGATCGAGCAGTTCATGACTTCCGTGGCGAC
GCACTCGGCACAGCTCGCGAGGCATCGAGGGGCCACTGCGATAGAGCATA
GTGACGTGGCGTTTACGCTCTTGAAACAGTGGAATATGGCCGTACCTGCC
ATTGGAACGTCGGCGTCAAGGGGGGGAGGCGGGGGCGGAGGAGGAGGAAA
GAAGGGGGCGAAGAGAAAGTCGAGgtgagagagagagggagcatgtacaa
agaagacaaagaaaagggcaatagtggagtactcctttgttggaagggag
gcaggataaagtgtcctgcgttcatttgtgtgtcaacgaatccattgtta
acatcccttggttgttttttctgcttagttcgtctttctatttttttaca
cacatttcctgttatcgatatccctttgcttgctttttgcttgtgattct
tcccatgatcgattacttctcaaactttcgggggcggaggggagtctagg
atgccggacttaattgcacgtattctttctgacacacagaaacgaaggga
gggaatgagggaaggaaaaggcctgtttaattcatcctattgctctagtc
cttctccttctccatcgcccagctttgatcaagtgattcgatgagtgaag
agtaggtatgaatcttccattgacctcttcctctaacttttcctctcttt
cttgctctagCATCGCTGCTGCTGCTGCTACTCCTGTCACTGCGGCATGT
CTGAAGACGGGGTTCAAGAAATTGGGCGAGCATTTGACGCGGAGCTGA
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protein sequence of NO07G00770.1

>NO07G00770.1-protein ID=NO07G00770.1-protein|Name=NO07G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MALPPNQTLDKWKQAHNTSGGPIASTKQRRLQALLDEVDPSGTFRLDGEA
EEIVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPA
IGTSASRGGGGGGGGGKKGAKRKSSIAAAAATPVTAACLKTGFKKLGEHL
TRS*
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Synonyms
Publications