NO07G00720, NO07G00720 (gene) Nannochloropsis oceanica

Overview
NameNO07G00720
Unique NameNO07G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length402
Alignment locationchr7:252142..252543 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:252142..252543 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003678DNA helicase activity
GO:0016787hydrolase activity
GO:0005524ATP binding
GO:0004386helicase activity
GO:0003678DNA helicase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0042555MCM complex
GO:0042555MCM complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006270DNA replication initiation
GO:0032508DNA duplex unwinding
GO:0006270DNA replication initiation
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR031327MCM
IPR008047MCM_4
IPR027925MCM_N
Homology
BLAST of NO07G00720 vs. NCBI_GenBank
Match: CBJ48399.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 1.200e-17
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    9 EGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVINDEAARLRAMDGEEGGR 118
            E AVIWGT   ++  + RFRQF+  F L+       E+EP Y S L E+H T+E++I++NC+HL++ +P+RRLY  + HYPQE V  MD  +N+E  R+ + +   G R
Sbjct:  294 ERAVIWGTDVNVVESMERFRQFLLEFTLE------GEDEPLYKSQLEEIHRTQEFNISINCKHLYSFVPSRRLYQQLVHYPQEIVPIMDLAVNEEFTRMFSEEELMGSR 396          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: GAY04888.1 (DNA replication licensing factor mcm4, putative [Pythium insidiosum])

HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 0
Query:    7 DLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEE------EEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVINDEAARLRAMDGEE 115
            DL GAV+WGT   +   +  FR F+R F ++ DA            EP+Y  +LR +  T+    NL+ +HL  H P+R+LY+ +  +PQ  +  +D V+NDE  R+ A DG E
Sbjct:  216 DLTGAVVWGTNISVAESMALFRTFLREFHVRGDADERSHPALLSTREPYYXGVLRHLALTQSPVFNLDTQHLLQHRPSRKLYNQLILFPQVLIRILDMVVNDELRRVVAQDGGE 329          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: KXN89729.1 (DNA replication licensing factor mcm4 [Leucoagaricus sp. SymC.cos])

HSP 1 Score: 73.2 bits (178), Expect = 7.000e-10
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0
Query:    3 TGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND---EAARLRAMDGEEGGR 118
            T D   E   IWGTT  +   ++ FR F++ FK K+           Y +LLR +  T E ++N++ R+L  + PA++LY  +T YPQE +  MD+V+ D   E A L   +G EG R
Sbjct:  183 TSDEPDEIRAIWGTTVNLADTMKTFRDFLKGFKPKYRI---------YENLLRRMRQTGETNLNVDGRNLQAYPPAKKLYGQLTKYPQEVIPVMDQVLKDLMLETADLDQQEGREGMR 291          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: XP_016609079.1 (hypothetical protein SPPG_04133 [Spizellomyces punctatus DAOM BR117] >KND01040.1 hypothetical protein SPPG_04133 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 71.2 bits (173), Expect = 2.700e-9
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 0
Query:    3 TGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEEE--------EPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND 103
            T D      VIWGTT  I   ++ FR FI +F     A  G  E        EP Y   LR++  + +Y++NL+C +L  + PAR+LY+ +  YPQE +  MD  + +
Sbjct:  215 TSDPAAIRMVIWGTTVNIAESMQMFRDFITNFTQSQHAADGNNEEDMMDQDHEPFYPYYLRQLKESEDYNMNLDCSNLRVYQPARKLYNQLIRYPQEIIPLMDHTLTE 322          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: EIE86614.1 (hypothetical protein RO3G_11325 [Rhizopus delemar RA 99-880])

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-8
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 0
Query:    1 METGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKF------DAGAGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND 103
            ME  D  L   +IWGTT  I   + RFR F+  F L        +A + ++  P Y   L  +  T+  ++NLNC++L  +   R LY  +  YPQE +  MD  + +
Sbjct:  112 MEETDPSLGARLIWGTTVNIQEAIGRFRNFLSHFTLAHRKEQTGEAMSADDHSPFYPMYLAHLFNTKSTNVNLNCKNLLAYPETRGLYEQLVKYPQEIIPLMDHTVTE 219          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: XP_003675774.1 (hypothetical protein NCAS_0C04200 [Naumovozyma castellii CBS 4309] >CCC69410.1 hypothetical protein NCAS_0C04200 [Naumovozyma castellii CBS 4309])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 37/109 (33.94%), Postives = 54/109 (49.54%), Query Frame = 0
Query:    3 TGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGE---------EEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND 103
            T DA+    +IWGT   I     +FR F+ SFK KF     E         +EE +Y+  L E+      ++NL+ R+L        LY+ + +YPQE +S MD+ I D
Sbjct:  166 TSDANEPLRIIWGTNVSIQECATKFRNFLMSFKYKFRKTLDEREQFINSTTDEELYYVQQLNEMREVGNCNLNLDARNLLAFKQTEELYYQLLNYPQEVISIMDQTIKD 274          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: EIF49034.1 (cell division control protein 54 [Brettanomyces bruxellensis AWRI1499])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 0
Query:   12 VIWGTTYPILHFVRRFRQFIRSFKLKF-------DAGAGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND 103
            VIWGT   I      FR F+ SFK+K+            E+E+ +Y+ +L  +  T   ++NL+CR+L  +   ++LY+ + +YPQE V  MD+ I D
Sbjct:  193 VIWGTNVSIQECSDNFRTFLMSFKMKYRKKMDDTXEDPDEDEKLYYMDMLNMMKETNATNLNLDCRNLLAYSSTKKLYYQLINYPQEVVPIMDQTIKD 290          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: XP_011122947.1 (hypothetical protein AOL_s00080g270 [Arthrobotrys oligospora ATCC 24927] >EGX48641.1 hypothetical protein AOL_s00080g270 [Arthrobotrys oligospora ATCC 24927])

HSP 1 Score: 67.0 bits (162), Expect = 5.000e-8
Identity = 38/122 (31.15%), Postives = 62/122 (50.82%), Query Frame = 0
Query:    2 ETGDAD-LEGAVIWGTTYPILHFVRRFRQFIRSFKLKF---------DAGAGEE-EEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVINDEAARLRAMDG 113
            +T +AD      IWGT   I+  +R FR F+R+FK K+           GAGE+      L  ++++H T    +N++C++L      ++ YH + +YP E +  MD+V+ DE   L    G
Sbjct:  173 QTSEADEFTQRFIWGTNISIIDSMRNFRNFLRNFKRKYRMIYNGETVAPGAGEDLVYDEMLKAMKQLHVT---GLNVDCKNLLAFPQTKKFYHQLINYPAEIIPLMDQVVKDEMKELFVRSG 291          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: PSC67965.1 (DNA replication licensing factor MCM4 [Micractinium conductrix])

HSP 1 Score: 67.0 bits (162), Expect = 5.000e-8
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0
Query:    5 DADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVINDEAARLRAMDGEE 115
            D + +   IWGT   +     RF  F+R+FK      AG ++EP Y+ LL+E  A  E S N++ +H++     R LY+    YP ETV   D  +   +A L   D EE
Sbjct:  114 DGEADQTYIWGTNLSVSRVQARFNAFVRTFK-----EAGTDDEPKYMRLLQETRARAEVSFNIDGQHMYEF--DRTLYNWAVTYPAETVPIFDGQLAAISAELEGCDPEE 216          
BLAST of NO07G00720 vs. NCBI_GenBank
Match: XP_014179495.1 (DNA unwinding-related protein [Trichosporon asahii var. asahii CBS 2479] >EJT48225.1 DNA unwinding-related protein [Trichosporon asahii var. asahii CBS 2479])

HSP 1 Score: 66.6 bits (161), Expect = 6.600e-8
Identity = 38/127 (29.92%), Postives = 61/127 (48.03%), Query Frame = 0
Query:    3 TGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKF-------------DAG--------------AGEEEEPHYLSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVIND 103
            TGD ++    IWGTT P+   +  FR F+R FK K+             DAG                + ++P Y   +  +  T + ++NL+  +L  + P +RLYH + ++PQE V  MD+V+ D
Sbjct:  151 TGDDEITEKYIWGTTIPLQTTMNLFRDFLRGFKPKYRAKYNEAQAKAITDAGGIAPPPMPLYDNLSTRDADKPLYEGYIATMRQTGQTNLNLDALNLLAYPPTKRLYHQLVNFPQEMVPIMDQVLRD 277          
The following BLAST results are available for this feature:
BLAST of NO07G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ48399.11.200e-1743.12conserved unknown protein [Ectocarpus siliculosus][more]
GAY04888.12.300e-1336.84DNA replication licensing factor mcm4, putative [P... [more]
KXN89729.17.000e-1036.44DNA replication licensing factor mcm4 [Leucoagaric... [more]
XP_016609079.12.700e-935.19hypothetical protein SPPG_04133 [Spizellomyces pun... [more]
EIE86614.12.300e-832.41hypothetical protein RO3G_11325 [Rhizopus delemar ... [more]
XP_003675774.13.000e-833.94hypothetical protein NCAS_0C04200 [Naumovozyma cas... [more]
EIF49034.13.000e-834.69cell division control protein 54 [Brettanomyces br... [more]
XP_011122947.15.000e-831.15hypothetical protein AOL_s00080g270 [Arthrobotrys ... [more]
PSC67965.15.000e-834.55DNA replication licensing factor MCM4 [Micractiniu... [more]
XP_014179495.16.600e-829.92DNA unwinding-related protein [Trichosporon asahii... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000832NSK000832Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00720.1NO07G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00720.1NO07G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00720 ID=NO07G00720|Name=NO07G00720|organism=Nannochloropsis oceanica|type=gene|length=402bp
ATGGAGACGGGGGATGCGGATTTGGAAGGGGCAGTGATTTGGGGGACGAC
CTATCCGATCCTTCATTTTGTTCGACGGTTTCGTCAGTTTATTCGAAGTT
TTAAACTTAAATTTGACGCTGGTGCCGGCGAAGAGGAGGAACCGCATTAT
TTGAGTCTATTGCGAGAGGTGCATGCGACGAGGGAGTACAGCATTAACTT
AAACTGTCGGCACCTGTGGAATCACTTGCCGGCGCGGAGACTGTATCATG
TGATAACGCACTATCCTCAGGAGACAGTGTCGTTCATGGATAAGGTGATC
AATGATGAGGCGGCACGGTTGAGGGCGATGGACGGGGAAGAAGGGGGGAG
GACGAGTTGGAGGGGAGTGGGAAGAGGATCCAGGTGCGGCTGTTTAACTT
GA
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protein sequence of NO07G00720.1

>NO07G00720.1-protein ID=NO07G00720.1-protein|Name=NO07G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
METGDADLEGAVIWGTTYPILHFVRRFRQFIRSFKLKFDAGAGEEEEPHY
LSLLREVHATREYSINLNCRHLWNHLPARRLYHVITHYPQETVSFMDKVI
NDEAARLRAMDGEEGGRTSWRGVGRGSRCGCLT*
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Synonyms
Publications