NO07G00700, NO07G00700 (gene) Nannochloropsis oceanica

Overview
NameNO07G00700
Unique NameNO07G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1638
Alignment locationchr7:248972..250609 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:248972..250609 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G00700 vs. NCBI_GenBank
Match: EWM27323.1 (hypothetical protein Naga_100192g11 [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 3.600e-44
Identity = 220/345 (63.77%), Postives = 240/345 (69.57%), Query Frame = 0 
Query:  201 RLSEGLSLKYDAGGEHCPQYSQKQVDLLLETRLEEVKNTLLASHLAAQASEKTKWEARXXXXXXXXXXXXXXXXXXXXXLSAEVSSVEGAFAARLKETESDLMSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEQFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRKEEEMERQACVAEGKVVELKGALEKAHVEKALAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYVSLVPKAREHETMCEELLVMVEDLNQKLAGGGGK 546
            RLSEGLSLKYD GGEHCP+YSQ++VDLL+  R+EE K  L+A+   A   E   WEA+                     LSAE+ SVEGAFAARLKET+ +++SKEIQL+AVTAQLADMQ R   AE+  EE R+++E   XXXXXXXXXXXXXXXXXXXXXXXXXXX         QEQFA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                      DREQAYESLSRTAVSLQEHKRKAEEFEEKY +L PKA EH +MCEELLVMVE LNQKL    GK
Sbjct:  209 RLSEGLSLKYDFGGEHCPKYSQREVDLLVGKRVEEAKTALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXMKDRVAQRAQEQFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTLFPKAMEHASMCEELLVMVESLNQKLESQEGK 553
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BLAST of NO07G00700 vs. NCBI_GenBank
Match: XP_005854816.1 (hypothetical protein NGA_2042120, partial [Nannochloropsis gaditana CCMP526] >XP_005855285.1 hypothetical protein NGA_2042110, partial [Nannochloropsis gaditana CCMP526] >EKU21076.1 hypothetical protein NGA_2042110, partial [Nannochloropsis gaditana CCMP526] >EKU21544.1 hypothetical protein NGA_2042120, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-11
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:  240 LLASHLAAQASEKTKWEARXXXXXXXXXXXXXXXXXXXXXLSAEVSSVEGAFAARLKETESDLMSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVE 339
            L+A+   A   E   WEA+                     LSAE+ SVEGAFAARLKET+ +++SKEIQL+AVTAQLADMQ R   AE+  EE R+++E
Sbjct:    3 LVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLE 101
The following BLAST results are available for this feature:
BLAST of NO07G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27323.13.600e-4463.77hypothetical protein Naga_100192g11 [Nannochlorops... [more]
XP_005854816.11.400e-1147.47hypothetical protein NGA_2042120, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000831NSK000831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00700.1NO07G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525286gene_2388Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100192g11gene3231Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00700.1NO07G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00700 ID=NO07G00700|Name=NO07G00700|organism=Nannochloropsis oceanica|type=gene|length=1638bp
ATGGAGGAGACCACTGTCGCGGCGACCGTGCCCTTGAATCAGCGGCAGCA
ACCACATGACGACCACCTCGGCATAGTCCAACGGCTGAAAACCATCTCAC
CTACGCCTCAGCCGCCGTCCATGCACATGGAGGAGGAAGACGAGGAAGAG
ATTGTCACGTTCCGCATCGGGGGGCAGCACGTCCCCGCCGCCACGACCGC
CAACACCACAGCGGCTGCTGCCACAAGCAGCGCATTCGGTAAACAGCATG
AAAGCATTGTCGGCCTCTCGCAGCAGAAGCGTGCACCTTCTCCTTTGGCA
CCAGCGGTGTTCCCTCCCATGCCTTCCGCGGTCACCACTATGACAGCTCC
CTCCGACCCCATTGAACCCTCGTCTTCCAGTGCCGATGCAAGCCGACAGC
AGCAACCACAAACGACTGTGACGCGAACTTCAGCTGTCATGGCCGCCGCA
GCTGCCATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAG
TAAAGCTACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCC
TCAAAAAAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGC
CGGCTCTCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTG
CCCCCAGTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGG
AAGAAGTTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCA
GAGAAGACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGAC
TCGATGGAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGG
TGAGTAGTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCT
GATTTAATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGC
CGATATGCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTA
GAAGGAGGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGAC
GTCGCCGAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGAT
AGAGATGAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGG
CGCAGCAGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGG
GAGGCCTCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTAC
GGAGGCGCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAG
AAGCGGATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAA
ATGGAACGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGG
GGCTCTGGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAG
AGCAGGCATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCAT
AAGAGGAAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAA
GGCGAGGGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGG
ACCTGAATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
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protein sequence of NO07G00700.1

>NO07G00700.1-protein ID=NO07G00700.1-protein|Name=NO07G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MEETTVAATVPLNQRQQPHDDHLGIVQRLKTISPTPQPPSMHMEEEDEEE
IVTFRIGGQHVPAATTANTTAAAATSSAFGKQHESIVGLSQQKRAPSPLA
PAVFPPMPSAVTTMTAPSDPIEPSSSSADASRQQQPQTTVTRTSAVMAAA
AAMVSPLKAAAGSLSPSKATKSSAGTAANTSNTLKKDDTDEDEEIDELKR
RLSEGLSLKYDAGGEHCPQYSQKQVDLLLETRLEEVKNTLLASHLAAQAS
EKTKWEARVKASEEEATRWRVQCEIFEKELSAEVSSVEGAFAARLKETES
DLMSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVEEAGQKEERLLRD
VAEKLEREKARRVKDVIEMKERVAKRAQEQFAVAQQQFNSLEKALKEKEG
EASHLAGEVERAQAEATEALRQKEKAVSQLAAIEADMASVRAAAGRKEEE
MERQACVAEGKVVELKGALEKAHVEKALAIKDREQAYESLSRTAVSLQEH
KRKAEEFEEKYVSLVPKAREHETMCEELLVMVEDLNQKLAGGGGK*
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Synonyms
Publications