NO07G00570, NO07G00570 (gene) Nannochloropsis oceanica

Overview
NameNO07G00570
Unique NameNO07G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length537
Alignment locationchr7:211684..212220 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:211684..212220 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028260FAM177
Homology
The following BLAST results are available for this feature:
BLAST of NO07G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000817NSK000817Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00570.1NO07G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580136gene_2371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00570.1NO07G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00570 ID=NO07G00570|Name=NO07G00570|organism=Nannochloropsis oceanica|type=gene|length=537bp
ATGGCCTCGCCTCCTCCTCCTTCCCGTTCCCTGCCGCCCACTCGTTTGCT
GGATGTGGATCGTACGCAAGAAGAGGATCCACAACAACAACAACAACAGC
AGCAGCAGCACTTTCCCCAACCTCACTCCACGTCCGCGCATGCCCTCGAT
GATGGGGAAGGGGGGGGGAGGGGAGGGCGTCACGCTCCTTCTCCATCTCC
CCCTTCTCAAAAAGAGCAAGCACCACCACTCCTGACCCTCCCTGGCTTGT
TGTTTCGCGCTAAGTGGGCAAGTGAGAAGTGCCTTGATGGGGTGGATTAT
GTGGGGGCGGGGGTGGCAGGGTTATTGGGGATAACTGACTCGAGGTTCCA
GTATATTGTCGATAATATGTCGGAGAAGGACAAGGAGGCAGCGGAGGAGG
ATTTGAAGAGGATGAGAGATGGGATGGAGATGGGAGGGAGGGGCGGAGGA
AAGGGAATCTTGCTGATTGAGGAATTAGCGGCGGGGAGGGGGGAGGTAGG
GAGGAAGGGCCGAGGGGGGCCGGAAGACCACGTGTAG
back to top

protein sequence of NO07G00570.1

>NO07G00570.1-protein ID=NO07G00570.1-protein|Name=NO07G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MASPPPPSRSLPPTRLLDVDRTQEEDPQQQQQQQQQHFPQPHSTSAHALD
DGEGGGRGGRHAPSPSPPSQKEQAPPLLTLPGLLFRAKWASEKCLDGVDY
VGAGVAGLLGITDSRFQYIVDNMSEKDKEAAEEDLKRMRDGMEMGGRGGG
KGILLIEELAAGRGEVGRKGRGGPEDHV*
back to top
Synonyms
Publications