NO07G00460, NO07G00460 (gene) Nannochloropsis oceanica

Overview
NameNO07G00460
Unique NameNO07G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2504
Alignment locationchr7:169792..172295 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA polymerase delta small subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:169792..172295 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0071897DNA biosynthetic process
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR024826DNA_pol_delta/II_ssu
IPR007185DNA_pol_alpha/epsilon_bsu
Homology
BLAST of NO07G00460 vs. NCBI_GenBank
Match: CBJ32730.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 312.8 bits (800), Expect = 2.000e-81
Identity = 184/445 (41.35%), Postives = 263/445 (59.10%), Query Frame = 0
Query:   35 SAVGQEDEGEQKL--QRVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM--APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHV-EGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR----EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            +AVG +     +L   RV L+Y P +QRF  K ++FTQQ+SH+Y  RL  ++  +  +A+ +WG  G         +++++ +G   V V+GT +K M LRPS+L+E+R++   +G       P  ++ S +D+LVLEDESGRVS++GP +     V+GLV+AVKG V   G + V D C AG+P                         V  +   K+  + D L + +L+++V G++G    +    +RIGR+IV GD +A     LL      K + A+QQ   A P K LD +L  LA+A P+DVMPG  DP+N TLPQQP+HPCLL +A+R+  +   V NP+EA I G+R+FLG SGQ   DMARY TP +        A   LR +E+ L+WRH+APTAP+TL CYPF  +DPFV+   P ++F GNQP FATS+LEG
Sbjct:   22 TAVGADGARGDELGAPRVELAYEPRYQRFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWV-VIGTTYKAMKLRPSILNEFRED---RGISMAVVAPVGSFTSEDDSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKGTVTASGEMLVDDWCPAGIPPP-----------------------VPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRF-GALKRVTNPHEAKI-GERVFLGSSGQPLLDMARYTTPEAEADKDAKPA--CLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEG 435          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: XP_005847151.1 (hypothetical protein CHLNCDRAFT_35821 [Chlorella variabilis] >EFN55049.1 hypothetical protein CHLNCDRAFT_35821 [Chlorella variabilis])

HSP 1 Score: 291.6 bits (745), Expect = 4.800e-75
Identity = 174/423 (41.13%), Postives = 237/423 (56.03%), Query Frame = 0
Query:   49 RVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHV-EGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNE-KSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLE 470
            R+  S+TP   RF  K R + +QYS +Y  RL  MR   E +AQ  W      P +    I  V   G V + GTL+K+M L+PS+LDEY  +  +   L  A      +   +D L+LEDE  R++L G  L VGE VTG+V AV+GHV   G     D+C AGLP Q   P              G  +YV L SG  + + +S  L L++L++Y+ G +G +  +  VV RI R++VAG LL    D      + + +QQ     P + +D+ LT+LA+AVP+ +MPGA DP+N TLPQQP+H C+ P AA Y S+ H   NP+E  + G   FLG SGQ  +D+ RY           S     + ++EK L WRHLAPTAPDTLA YP+ ++DPF+L S PHV F G QP F T+L+E
Sbjct:   40 RMAASFTPKDNRFLLKNRDYDRQYSQLYYYRLEQMRKHAEEAAQRAW------PGIQVVHILSVPEEGEVAIAGTLYKEMALKPSILDEYVKDRTMSQQLGRA-----RFTQPDDRLILEDEGARLALCGDKLPVGECVTGVVAAVRGHVLPNGDFEALDLCYAGLPPQAPLP------------AVGEDKYVALVSGLGVGDGESSPLRLELLVDYLSGLLGGEQERGQVVGRIARVVVAGGLLKSNADLSQPTAYSSVRQQAAALGPVRDVDMALTELAAAVPLGIMPGAGDPANYTLPQQPLHRCMFPGAAAY-STLHRATNPHEFELDG-VTFLGTSGQNVDDVCRY-----------SELEDRVTILEKLLRWRHLAPTAPDTLAAYPYFNNDPFILRSTPHVLFAGGQPQFGTALVE 426          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: EWM27298.1 (polymerase (dna directed) delta regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 288.9 bits (738), Expect = 3.100e-74
Identity = 152/208 (73.08%), Postives = 171/208 (82.21%), Query Frame = 0
Query:    1 MAGGGDVVDVPSGSSIRITTAMLDNILRNGEENPSAVGQEDEGEQKLQRVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM-------APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEGG 202
            MAGGGD VD+ S SS+  + AMLD+IL+NGEE+P      +  E+KLQRV LSYTPT+QRFRAK RTFTQQYSHMYTNRLRLMRPMLEA+A AKWGTG         APTLC+K+IDLVDGA T MV+GT+FKDMPLRPSLLDEYRDEAALQGALQPA GP+TNY S EDTLVLEDESGRV+L+G +L VG+FVTGLVVA KG   GG
Sbjct:    1 MAGGGDFVDM-STSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGG 207          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: XP_005899474.1 (PREDICTED: DNA polymerase delta subunit 2 [Bos mutus] >XP_014334805.1 PREDICTED: DNA polymerase delta subunit 2 [Bos mutus] >ELR53777.1 DNA polymerase delta subunit 2 [Bos mutus])

HSP 1 Score: 281.2 bits (718), Expect = 6.500e-72
Identity = 180/425 (42.35%), Postives = 249/425 (58.59%), Query Frame = 0
Query:   52 LSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHV-EGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKL--NEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLA---PFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            ++YT + Q FR   R+F++QY+H+Y  RL  MRP L + AQ +WG+G     L KK+ +L  G     VVGTLFK MPL+PS+L E  +E  L    QP   P + Y+  +D L+LEDE  R+ L G ++ V + VTG V+AV G V + G   V D C AGL  Q+       A  ++ +      R+VLL SG  L       LL  Q+L++ V G +G D  ++   + + R+I+AG+LL+      DS+ + K++T K Q       K LD +L QL+++VP+DVMPG  DP+N TLPQQP+HPC+ P A  Y S+   V NPY+A I G R FLG SGQ   D+ RY           SS    L ++E TL+ RH++PTAPDTL CYPF   DPF+ P  PHVYF GN P+F + +++G
Sbjct:   30 VTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSG----VLVKKLCELQPGE-KCCVVGTLFKAMPLQPSILREVSEEHNL--LPQP---PRSKYIHPDDELILEDELQRIKLEG-TIDVSKLVTGTVLAVLGSVGDDGKFLVEDHCFAGLAPQK------PACPLDTD------RFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLG-DEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAY-STLQLVTNPYQATIDGVR-FLGTSGQNVSDIFRY-----------SSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQG 417          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: OVA13065.1 (DNA polymerase alpha/epsilon [Macleaya cordata])

HSP 1 Score: 281.2 bits (718), Expect = 6.500e-72
Identity = 178/434 (41.01%), Postives = 250/434 (57.60%), Query Frame = 0
Query:   40 EDEGEQKLQRVRLSYTPTFQRFRAKTRTFT-QQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKG-HVEGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKL-NEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            E +G   LQR +  Y    +RF  +   +T QQYS +Y  RL  MR +L  S   KW       T    V+ + +G   + +VGTL+K M L+P +LDEY  E +    ++P      N++  +D L+LEDESGRV L G  LA   +VTG+VVAV G     G   V D+   GLP Q E P +               +YV+L SG  + N KS+ L LQ+L++++ GH+G +  +R + S+I R+++AG+ +      LL  + + AK Q   + P K LD++LTQLA+AVP+D+MPG+ DP+N +LPQQP+H CL P A+ Y ++F +  NP+   +   R FLG SGQ  +D+ +Y           S A   L  ME+TL W HLAPTAP+TL CYPF D DPF++ S PHVYFVGNQ  + T LL+G
Sbjct:    5 EVDGASNLQRKQSLYQSKDERFEIRMEKYTGQQYSQIYFARLHKMRTLL-YSLVDKWKPHVPVCT----VLGIEEGKECI-IVGTLYKHMKLKPCILDEYSKERSAVPVVKP-----HNFMHPDDQLILEDESGRVKLGGTVLAASNYVTGVVVAVHGKETVSGEFFVQDILERGLPHQIELPLDSR-----------EDKYVVLVSGLSVGNGKSNPLNLQLLVDHITGHLGDEKEQR-IASQIVRVVIAGNSV-EIPHGLLNGQTLAAKDQSKLSEPIKELDILLTQLAAAVPLDIMPGSSDPANFSLPQQPLHRCLFPGASVY-NTFMSCTNPHSFELDSVR-FLGTSGQNIDDLEKY-----------SEAKDKLDFMERTLRWIHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQIKYETRLLKG 401          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: XP_020260121.1 (DNA polymerase delta small subunit [Asparagus officinalis])

HSP 1 Score: 280.4 bits (716), Expect = 1.100e-71
Identity = 170/429 (39.63%), Postives = 253/429 (58.97%), Query Frame = 0
Query:   47 LQRVRLSYTPTFQRFRAKTRTFT-QQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKG-HVEGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSDL---LPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            L+R + +Y    +R+      +  QQYS +Y  RL  MR +L +S   KW      P +    +  ++     +++GT++K M L+P +LDEY  E ++   ++P      N++  +D LVLED+SGRV L G  ++   FVTG+V+A+ G    GG   V D+  AGLP Q E P +               +YV+  SG  LN  SD    L  Q+L+++V GH+G D +++++ S+I RL++AG+ +      LL  +++ +K     + P K LD++LTQLA+A+P+D+MPG++DP+N +LPQQP+H CL P A+ Y ++F +  NP+E  + G R FLG SGQ  ED+ +Y           S A   L  ME+TL WRHLAPTAP+TL CYP+ D DPF+L S PHVYFVGNQ  + TS+L+G
Sbjct:   15 LERKQATYRSLDERYEIHGERYKGQQYSQIYFTRLHHMRNLL-SSVTPKW-----KPHVPVNTVLELEAGKECIIIGTIYKHMKLKPCVLDEYSKERSVVPLVRP-----HNFMHPDDYLVLEDDSGRVKLTGELVSPSTFVTGIVLALHGKETGGGEFLVQDILEAGLPPQIERPHDSR-----------EDKYVVFVSG--LNVGSDTFNPLQFQLLVDHVTGHLG-DENEQEIASQIVRLVIAGNSV-EISQCLLTGQNIASKDHAKLSEPIKELDILLTQLAAAMPVDIMPGSNDPANFSLPQQPLHRCLFPGASVY-NTFLSCTNPHEFELDGAR-FLGTSGQNIEDLDKY-----------SDAKSKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFLLESCPHVYFVGNQHKYETSVLQG 404          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: NP_776853.2 (DNA polymerase delta subunit 2 [Bos taurus] >XP_015325451.1 PREDICTED: DNA polymerase delta subunit 2 isoform X1 [Bos taurus] >XP_015325452.1 PREDICTED: DNA polymerase delta subunit 2 isoform X1 [Bos taurus] >XP_019814511.1 PREDICTED: DNA polymerase delta subunit 2 [Bos indicus] >XP_019814512.1 PREDICTED: DNA polymerase delta subunit 2 [Bos indicus] >XP_019814513.1 PREDICTED: DNA polymerase delta subunit 2 [Bos indicus] >P49004.2 RecName: Full=DNA polymerase delta subunit 2; AltName: Full=DNA polymerase delta subunit p50 >AAI13316.1 Polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Bos taurus] >DAA30470.1 TPA: DNA polymerase delta subunit 2 [Bos taurus])

HSP 1 Score: 279.6 bits (714), Expect = 1.900e-71
Identity = 179/425 (42.12%), Postives = 248/425 (58.35%), Query Frame = 0
Query:   52 LSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHV-EGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKL--NEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLA---PFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            ++YT + Q FR   R+F++QY+H+Y  RL  MRP L + AQ +WG+G     L KK+ +L  G     VVGTLFK MPL+PS+L E  +E  L    QP   P + Y+  +D L+LEDE  R+ L G ++ V + VTG V+AV G   + G   V D C AGL  Q+       A  ++ +      R+VLL SG  L       LL  Q+L++ V G +G D  ++   + + R+I+AG+LL+      DS+ + K++T K Q       K LD +L QL+++VP+DVMPG  DP+N TLPQQP+HPC+ P A  Y S+   V NPY+A I G R FLG SGQ   D+ RY           SS    L ++E TL+ RH++PTAPDTL CYPF   DPF+ P  PHVYF GN P+F + +++G
Sbjct:   30 VTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSG----VLVKKLCELQPGE-KCCVVGTLFKAMPLQPSILREVSEEHNL--LPQP---PRSKYIHPDDELILEDELQRIKLEG-TIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQK------PACPLDTD------RFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLG-DEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAY-STLQLVTNPYQATIDGVR-FLGTSGQNVSDIFRY-----------SSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQG 417          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: XP_002607199.1 (hypothetical protein BRAFLDRAFT_68004 [Branchiostoma floridae] >EEN63209.1 hypothetical protein BRAFLDRAFT_68004 [Branchiostoma floridae])

HSP 1 Score: 279.3 bits (713), Expect = 2.500e-71
Identity = 185/431 (42.92%), Postives = 243/431 (56.38%), Query Frame = 0
Query:   48 QRVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGAL-QPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKG-HVEGGVLTVADVCVAGLPSQE--EGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSD-LLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPF---DDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            +R + SY    QRF  K R F +QY+H+Y  RL  M+  L+ +A+ KWG         KK+ ++  G  T +V+GTLFK M L+PS+L E  +E   +GA+ QP   P   Y    D L+LEDE  RVSLAG  L V   VTG +VAV G   E G   V D C   +P Q+  + PEE               R+V+L SG  +    D LL LQ+L++ V G +G D   +   + I R+I+AG+ L+      DSL + K+++ K         K LD  L QL+S V +DVMPG  DP+N  LPQQP+H C+ P A +Y  + HTVPNPYEA +GG R FLG SGQ  ED+ +Y           SS   +L ++EKTL   HLAPTAPDTL  YPF + DPF+L S PHVYF GNQ  F + +LEG
Sbjct:   13 ERAQCSYENLSQRFMLKQRNFGRQYAHIYAVRLWEMKDRLKKAAKRKWGVD------AKKLSEMETGE-TCVVIGTLFKHMELKPSILKEISEE---EGAMPQP---PRAKYTEDADNLILEDEVQRVSLAG-KLDVQSSVTGTIVAVYGAEDESGKFQVKDFCYVDMPVQDSLQTPEE--------------DRFVVLVSGLGIGSSQDNLLELQLLVDLVTGQLG-DVGDQKSAANIVRVIMAGNSLSESTQDKDSLTKAKYLSRKTAAGSVEAMKVLDDFLVQLSSCVDVDVMPGDFDPANHVLPQQPLHRCMFPRAMKY-PTMHTVPNPYEADVGGVR-FLGTSGQNIEDIYKY-----------SSLENSLEILEKTLTVGHLAPTAPDTLGSYPFHESDPFILKSCPHVYFAGNQAKFQSKVLEG 401          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: ONK71042.1 (uncharacterized protein A4U43_C04F4110 [Asparagus officinalis])

HSP 1 Score: 279.3 bits (713), Expect = 2.500e-71
Identity = 166/405 (40.99%), Postives = 243/405 (60.00%), Query Frame = 0
Query:   70 QQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKG-HVEGGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSDL---LPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            QQYS +Y  RL  MR +L +S   KW      P +    +  ++     +++GT++K M L+P +LDEY  E ++   ++P      N++  +D LVLED+SGRV L G  ++   FVTG+V+A+ G    GG   V D+  AGLP Q E P +               +YV+  SG  LN  SD    L  Q+L+++V GH+G D +++++ S+I RL++AG+ +      LL  +++ +K     + P K LD++LTQLA+A+P+D+MPG++DP+N +LPQQP+H CL P A+ Y ++F +  NP+E  + G R FLG SGQ  ED+ +Y           S A   L  ME+TL WRHLAPTAP+TL CYP+ D DPF+L S PHVYFVGNQ  + TS+L+G
Sbjct:  104 QQYSQIYFTRLHHMRNLL-SSVTPKW-----KPHVPVNTVLELEAGKECIIIGTIYKHMKLKPCVLDEYSKERSVVPLVRP-----HNFMHPDDYLVLEDDSGRVKLTGELVSPSTFVTGIVLALHGKETGGGEFLVQDILEAGLPPQIERPHDSR-----------EDKYVVFVSG--LNVGSDTFNPLQFQLLVDHVTGHLG-DENEQEIASQIVRLVIAGNSV-EISQCLLTGQNIASKDHAKLSEPIKELDILLTQLAAAMPVDIMPGSNDPANFSLPQQPLHRCLFPGASVY-NTFLSCTNPHEFELDGAR-FLGTSGQNIEDLDKY-----------SDAKSKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFLLESCPHVYFVGNQHKYETSVLQG 469          
BLAST of NO07G00460 vs. NCBI_GenBank
Match: XP_024369612.1 (DNA polymerase delta small subunit-like isoform X1 [Physcomitrella patens] >PNR58077.1 hypothetical protein PHYPA_005072 [Physcomitrella patens])

HSP 1 Score: 279.3 bits (713), Expect = 2.500e-71
Identity = 172/427 (40.28%), Postives = 251/427 (58.78%), Query Frame = 0
Query:   47 LQRVRLSYTPTFQRFRAKTRTFT-QQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVE-GGVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKL-NEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLREKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEG 471
            + R+   Y    Q++    + +  QQYS +Y  R+  +R  L    Q +W      P+L    I  ++     +V+GTL+K M L+PS+LDEY  E     ++ P A PN  +   +D L+LEDESGRV L G ++    +VTG+VVA+ G  E  G   V DV VAGLP Q+  P + + V+          ++VL  SG K+    ++ L LQ+L++++ GH+G +  ++ + S+I R+++AG  L     S+   + M+AK Q     P K LDL LTQ+++A+P+D+MPGA+DP+N +LPQQP+H CL P A  Y ++F +  NP++  +  D LFLG SGQ  +D+++Y           S A   L  ME+TL WRHLAPTAPDTL CYPF D DPF+L + PHVYF GNQP +A+ LL G
Sbjct:   13 IPRLHAPYVSQDQKYGLSMQRYKGQQYSQLYFIRIVTIRQHLTPCIQERW------PSLPVCNILALEEDKACVVIGTLYKQMQLKPSVLDEYSKER----SVVPLASPN-KFTHKDDYLILEDESGRVKLTGSAVLSSMYVTGVVVAIVGREEKDGEFFVEDVMVAGLPPQK--PLKNSDVD----------KFVLFVSGLKIGGHGTNPLDLQLLVDHLTGHLG-EVQEQSLSSQIVRMVIAGGSL-DLQTSISNGQPMSAKNQSKLVEPVKELDLALTQISAAMPVDIMPGANDPANFSLPQQPLHKCLFPGATMY-NTFVSATNPHQFEL-DDVLFLGTSGQNIDDLSKY-----------SEAEDRLDFMERTLMWRHLAPTAPDTLGCYPFIDRDPFILETCPHVYFCGNQPHYASRLLTG 401          
The following BLAST results are available for this feature:
BLAST of NO07G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ32730.12.000e-8141.35conserved unknown protein [Ectocarpus siliculosus][more]
XP_005847151.14.800e-7541.13hypothetical protein CHLNCDRAFT_35821 [Chlorella v... [more]
EWM27298.13.100e-7473.08polymerase (dna directed) delta regulatory subunit... [more]
XP_005899474.16.500e-7242.35PREDICTED: DNA polymerase delta subunit 2 [Bos mut... [more]
OVA13065.16.500e-7241.01DNA polymerase alpha/epsilon [Macleaya cordata][more]
XP_020260121.11.100e-7139.63DNA polymerase delta small subunit [Asparagus offi... [more]
NP_776853.21.900e-7142.12DNA polymerase delta subunit 2 [Bos taurus] >XP_01... [more]
XP_002607199.12.500e-7142.92hypothetical protein BRAFLDRAFT_68004 [Branchiosto... [more]
ONK71042.12.500e-7140.99uncharacterized protein A4U43_C04F4110 [Asparagus ... [more]
XP_024369612.12.500e-7140.28DNA polymerase delta small subunit-like isoform X1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000801NSK000801Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00460.1NO07G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326832gene_2356Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100824g1gene3258Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00460.1NO07G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00460 ID=NO07G00460|Name=NO07G00460|organism=Nannochloropsis oceanica|type=gene|length=2504bp
ACAACAGAGAGGAGCAAGCAACTTTCCATCTACGTAGAACGCTGCCTGTA
AGAACCATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAG
CATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAG
AAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAG
CGGGTGCGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAAC
CCGAACATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGAC
TGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGA
GGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGC
GGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGC
CGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGgtgagtag
agggaaggctggtagggagagagggaggaaggggagaaggagcgtcatga
agagacaagtgcgatacgtgctactttttgttattgactgaaaaagcaat
ccacgtgtacaagcggatcaaagcgagtgtaattgaaaatgaataagaag
acaccccgtcacacccgccttcattccgtcactcacacttcgataccagc
taccttaaactcctcccctcccacaccctccctccctccctccctccctc
cctccctccctccatccctccctccctccctccctccctgcagGTGCCTT
GCAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCC
TTGTCCTGGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTG
GCCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGT
GGAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTT
CCCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAA
GGAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGgtgagtgctt
gcagaggagggagggaagggtggcaggagggagggagggagggagggagg
cagggaggaagagagggaaggagggaagggattatgttatgtttcatttc
tgtgtttttcaaccatctttcccgcatttactcgtttatgcagGGTTTAA
GCTGAATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATG
TGCAAGGCCACGTGGGCTCAGATGCCCACAAGCGGGATgtaagttaatga
acaaaccctccctctctccctccctccctcctttcctccctaattgttgg
tcttttctttcttttcctgagttttctcttcctccctccctccctccctc
cctccctcagGTCGTCTCCCGCATCGGCCGCCTCATTGTCGCGGGCGACC
TCCTCGCGCCCTTCGACGACTCCCTCCTCCGGGAGAAGCACATGACTGCC
AAGCAACAGGAGGATTTCGCCCTCCCTTTCAAGCACCTCGACCTCGTCCT
CACGCAGgtccggcgccaggagaggagggaggcagtgagggagggaggga
ggggaaaacgaggatgtacgatgttttttgttttggcttgttcacattgc
atgaaacacacatagacccgaccctccatccctcccccctcctcctccca
cctcttgatccatttaacctcccgcgcattaccatcctcccaacctccct
cctccttcagCTCGCCTCTGCAGTGCCTATGGACGTTATGCCAGGCGCCG
ACGACCCCTCGAACAGCACGCTCCCGCAGCAGgtacggtgtgactgtatc
cttcctccctccctcccttcctcactccctcacgttctatccccaccccc
ctccttcttccctcaccttccccccttcccctccctacccccctccctcc
ctccctcgcccccagCCCATCCATCCCTGCCTCCTCCCCCACGCCGCGCG
CTACGCCTCCTCCTTCCATACTGTGCCAAACCCCTATGAGGCATGGATAG
GAGGCGATCGTCTCTTCCTCGGAGGCTCGGGGCAAGTGCCCGAGGACATG
GCCAGGTACATGACCCCTCCCTCCCTCCCGCCCTCCCCCACCTCCTCCGC
CGCGCGGGCGTTGCGGTTGATGGAAAAGACCCTCGAGTGGCGTCATCTGG
CTCCCACTGCCCCGGACACGCTGGCTTGCTACCCCTTTTGTGACGACGAT
CCATTCGTCCTACCCTCCCTCCCTCACGTGTACTTTGTGGGCAATCAGCC
GGCGTTTGCGACGTCCTTGCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGG
CGGGGGGGAGGGCGGGGGGGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGG
TTGTGTGCGTGCCATCATTCGCAGAGACCGGGACGGTGGTATTACTGGAG
TTGA
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protein sequence of NO07G00460.1

>NO07G00460.1-protein ID=NO07G00460.1-protein|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MAGGGDVVDVPSGSSIRITTAMLDNILRNGEENPSAVGQEDEGEQKLQRV
RLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM
APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQP
AAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEG
GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNE
KSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR
EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQP
IHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTP
PSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPS
LPHVYFVGNQPAFATSLLEGGGEGGGRAGGRAGGRAGGREGVCGLCACHH
SQRPGRWYYWS*
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Synonyms
Publications