NO07G00430, NO07G00430 (gene) Nannochloropsis oceanica

Overview
NameNO07G00430
Unique NameNO07G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr7:159882..161012 -

Link to JBrowse

Properties
Property NameValue
DescriptionThioesterase superfamily
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:159882..161012 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
IPR006683Thioestr_supf
Vocabulary: Molecular Function
TermDefinition
GO:0047617acyl-CoA hydrolase activity
Homology
BLAST of NO07G00430 vs. NCBI_GenBank
Match: EWM27338.1 (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 434.5 bits (1116), Expect = 3.400e-118
Identity = 227/372 (61.02%), Postives = 268/372 (72.04%), Query Frame = 0
Query:    6 PRLFAAIKNHSKHADALEFTQLFHSINFAHTLRVSEAELVRYDIKEGLETTHAITPYLCRTDSRGTYLSVGVITALFDEISTAACILQDKTHRPGVSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAVGKHCKMLPMAGVPFWDAAFAPFLYPFLKRPLMGLTRNHVAQGERVDWHGAASLYDYFPLDDLVLSGNGGGVGGVDDGRDGGKVEGKATTTASLHVQPRHCNGLFKMHGGALAVVAEDVAVRDVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSMHYLQANSKMVDVAAW-VNDAPHIKG--KGGEEVPCMSLGLSSQIEVRRGGKLCNHGTILWQ 375
            P L AA+K  S+H DALEFTQLFHSINFAHTLRVS+A L RYD K+GLETTH IT YLCRTD  GTYLS GVITA+FDEISTAACILQD+THRPGVSV+L VEV+AN+ PGR+L LKTWADK+GKSLAFLRLDLRDA + QLVAVGKHCK LPMAGVPFWD AF P LYP +++ L+GLTR HVA GERV+ H A+S++D+FPLD+L L          D G +  +++    T ASLHV+PRHCNGLFKMHGGALAV AE++A+ DVAAR                                     LS+HYLQAN ++VD+AAW + DA    G  +GG++      GL +QIEVRRGGKLCN G+I+WQ
Sbjct:    5 PSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKKGLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENES------DKGDERQRLQ---ATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAAR------------------------KKESTSQAPRARALSLHYLQANDRVVDLAAWTLQDACEKSGGEEGGDD------GLLTQIEVRRGGKLCNSGSIIWQ 337          
BLAST of NO07G00430 vs. NCBI_GenBank
Match: EWM28873.1 (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 4.700e-11
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0
Query:   73 LSVGVITALFDEISTAACILQDKTHRPGVSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAVGKHCKMLPMAGVPFWDAAF----APFLYPFLKRPLMGLTRNHVAQGE-------------RVDWHGAASLYDYFPLDDLVLSGNGGGVGGVDDGRDGGKVEGKATTTASLHVQPRHCNGLFKMHGGALAVVAEDVAV 271
            L  G +TA FDE+S+ A +  D  HRPGVSVSL   VL+ V  G  + +++   K+G++L F  + L D  TG+ +A G+H K L M     W  A      P  Y      L+   R    +               R +   A ++     LD+  +    G             V      +AS  V P+ CN    +HGGA A++AE  A+
Sbjct:   88 LDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAAS--PPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAAL 298          
BLAST of NO07G00430 vs. NCBI_GenBank
Match: XP_005853925.1 (thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526] >EKU22436.1 thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.8 bits (177), Expect = 2.600e-9
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0
Query:   59 ITPYLC-RTDSRGTYLSVGVITALFDEISTAACILQDKTHRPGVSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAVGKHCKMLPMAGVPFWDAAFAPFLYP 176
            +  +LC   D+    L  G +TA FDE+S+ A +  D  HRPGVSVSL   VL+ V  G  + +++   K+G++L F  + L D  TG+ +A G+H K L M     W  A   + +P
Sbjct:   73 VPSHLCDNYDNNHCLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFP 188          
The following BLAST results are available for this feature:
BLAST of NO07G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27338.13.400e-11861.02Thioesterase superfamily [Nannochloropsis gaditana... [more]
EWM28873.14.700e-1129.30acyl-coenzyme a thioesterase 13 [Nannochloropsis g... [more]
XP_005853925.12.600e-936.44thioesterase superfamily member 2 [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000850NSK000850Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00430.1NO07G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100226g6gene3216Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00430.1NO07G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00430 ID=NO07G00430|Name=NO07G00430|organism=Nannochloropsis oceanica|type=gene|length=1131bp
ATGAGGATCAAGTGTCCCAGGCTGTTCGCGGCTATCAAGAACCACTCGAA
GCATGCCGATGCCTTGGAGTTCACGCAGCTCTTCCACAGCATCAATTTTG
CCCACACTCTGCGCGTCTCAGAAGCGGAGCTCGTGCGGTACGACATCAAG
GAGGGCTTGGAAACCACCCACGCTATCACACCTTACCTCTGTCGAACAGA
CAGTCGCGGCACCTACCTCTCTGTCGGAGTGATCACGGCCTTATTCGACG
AAATCTCCACGGCCGCATGCATCTTGCAAGATAAGACACATCGTCCCGGT
GTCAGTGTCAGCCTTGTCGTCGAAGTGCTTGCAAACGTCGCACCGGGCCG
CACCCTCCTCCTCAAAACATGGGCCGACAAGCTAGGGAAGAGCTTGGCCT
TTCTCCGCCTTGACTTGCGTGATGCTGTCACAGGGCAACTGGTTGCAGTG
GGGAAACATTGCAAGATGTTACCGATGGCAGGGGTACCGTTTTGGGACGC
TGCCTTTGCGCCCTTTCTCTATCCCTTCCTCAAGCGGCCATTGATGGGGT
TGACAAGAAATCATGTAGCCCAGGGAGAGAGGGTGGATTGGCATGGGGCG
GCGTCTTTGTACGATTATTTTCCGTTGGATGATTTGGTGTTGAGTGGAAA
TGGTGGTGGAGTGGGAGGGGTTGATGACGGAAGGGATGGAGGGAAGGTTG
AAGGGAAAGCGACGACGACGGCAAGTCTGCACGTCCAACCGCGGCATTGC
AATGGTCTCTTTAAAATGCACGGTGGGGCCTTGGCAGTCGTGGCAGAAGA
TGTCGCTGTGCGGGACGTGGCGGCGCGATTACAATCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCT
TCCTCGGCAGAGGCTGCGACTGCGCCACGGGCACGTTCGCTGAGCATGCA
TTATTTACAAGCCAATAGTAAGATGGTGGACGTGGCGGCCTGGGTGAATG
ACGCCCCCCATATTAAGGGAAAGGGAGGAGAGGAAGTACCGTGTATGTCC
TTGGGGCTGTCGTCGCAGATAGAGGTGCGGCGTGGGGGTAAACTCTGCAA
CCATGGCACCATTTTGTGGCAGGAGAAGTGA
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protein sequence of NO07G00430.1

>NO07G00430.1-protein ID=NO07G00430.1-protein|Name=NO07G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRIKCPRLFAAIKNHSKHADALEFTQLFHSINFAHTLRVSEAELVRYDIK
EGLETTHAITPYLCRTDSRGTYLSVGVITALFDEISTAACILQDKTHRPG
VSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAV
GKHCKMLPMAGVPFWDAAFAPFLYPFLKRPLMGLTRNHVAQGERVDWHGA
ASLYDYFPLDDLVLSGNGGGVGGVDDGRDGGKVEGKATTTASLHVQPRHC
NGLFKMHGGALAVVAEDVAVRDVAARLQSSSSSSSSSFSSSSSFSSSSSS
SSAEAATAPRARSLSMHYLQANSKMVDVAAWVNDAPHIKGKGGEEVPCMS
LGLSSQIEVRRGGKLCNHGTILWQEK*
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Synonyms
Publications