NO07G00400, NO07G00400 (gene) Nannochloropsis oceanica

Overview
NameNO07G00400
Unique NameNO07G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2909
Alignment locationchr7:150606..153514 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:150606..153514 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
The following BLAST results are available for this feature:
BLAST of NO07G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000859NSK000859Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00400.1NO07G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00400.1NO07G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00400 ID=NO07G00400|Name=NO07G00400|organism=Nannochloropsis oceanica|type=gene|length=2909bp
GCCAGGGAGCTGGGGCACCCTTGTAGTAGTAGTGCTTGCTTTGTTGCCCA
CTACGGGCTCTCCACACCGCCCTTCAGCCTTTACACTTGTGCACTTTTCC
CTCAACTGGATTCGTTTTTTGCATACCAACGGCCCGATCCTGCTGCCGTG
TTTTTCGATGTCCTATTTTGCGTCCAACTTGCCTCTCCCTGTCTGTTGAA
GCAGCCACCTGAGTAAAGTATCCTCATTTTCCTGACACATACACGTGTAA
AACTCTCCCCCCACGACAGTTGTGGGCACTCATGCCGTTATGCTGCCTAC
GAGATTGCCTCTTCCTGGGTGGTCCCTTCTTGAAATGTAGCAAGCAGGGT
GGTGGCGGTGGCAGTAAGGAGGAGGAAGATGAGGACGTGGACGAGGAGGC
GAAAATCGAGGGACAGGAGGTCTACCCCTTTAACGACGAGCTCCAATACC
ATCAGCATCGCCAGGCTCTTACAAGCACTACCAGAAGTCGTTCCTCTAGG
ACGTCGCAGCCACACCACGGACTGCATCCGCCAACCTTGTCCTCCTTGTC
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGTCCCGCGGCAAACGTTA
GTGGGTGGGAAACCCTCTTCAATACACTCACAACTACTCAGCCTCCCTCT
CAGCCTCAATCCCAGCCTCGCTCTCGGCCACCCCGCCACCCTTCCTTGTC
ATCTTCCTCTCGTCCTTCCTCTCGCTCTTCCTCTCCCTTCCCCGGTCCTT
CCCCTTCACCCCCTCCCTCCTCCTCCTTTCTCGGTCTATCGATCGATCCT
CATTGTCAGCAACACCAATATCGACTTTACCCCTCCGGTGGCTCCGGATT
AGCCTCGACACCTCGGCACGGCAGCGCGGAAGCACGGGCGTGTCCCTACA
TGTGCCCCGTTTGCTTCCACTACTTCCCCTCCATTCTGGTTGCGTCGTCG
TGCTGTAGTCACTACGTGTGCTACGGATGTCTGTTGGGgtaagcaaaagg
ggaggaagtagatggagagaaggaaggagggagggtgcttgtgtctgttt
tgcttccatttctccctggtaaggcgacggtaggcgaatacagcaatttc
ctcactctcacccttccctccctccctccctccctccctccctccctccc
tccctccagATACGTTGCCTCCCGCTATGAAGTATCTCCCTCCGACCTTC
CCTATCTTGATGTGCCCTTTCTTTTGCCCATCCCTTGCCCTCTCTGTGCC
TCCCCCTCTTTTGCCCCTGCTCCCGTCTCTCGTTTTGCGCCCGTCAGGTC
GTACGAGGACGAGGGGAGGGAGGGAGGATTGGAGGGGGGGACGGAGGGAG
GGATGGACGGAGAAATGTCTGTCTCCGTGGTCGGGGGGGAGGAGAGAATG
GATGGGGAGGATTGCAAGGGAGGGAAGGACACAGGGAAGGAGTCAGAGAA
AGAGGAAGGGAAGGAGGTGGGTGAGAAGCAGTGGCAGCAGGAAAGGGAGC
ATGATGAAAAGCTGAATCCGGGGCACTCGGCGGCGATGCTGTAGGGAGAG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACAAGGAGGGATGGGGGCGT
TGGGGTGTGTGTGCAGATCAATAGATGGAAAGATATGTTTATACGGTGGT
GGTGTTCCAGGGAGGGAGGGAGGGAGGAAAGGAGGGATTTTTGGACAGTC
CGATAGATGGAGATCAATTTGTGTATGGAGGAAGAGGAAGTGTTGCACAT
ACAGAGAGAAATATGTTGAAGACGAAGGGACCTATGATGACAAAGGTACC
CACACGATCAGACGGTTTATGTAAGAGGAAGGAAATCGTTGGGAAGAAGA
CGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAGATGCAAGGGCAAGAAGCA
GGCGGAATACTGGATGCTCTCTTTGTTCATTTTGTGTGTCCTTTCGGTCA
TGCTGTGCTTTTCGCCTTCGTCCCTCCCCTCTGCAGAACCTCTTCCTGAA
TTCCCTTTCATTTGAATCGCCTTCATTCCTGCCAACTACCTCTGCAGCTT
CCTCCGAGTCTCCCTCCACCCACTATAGGTAATCTCCCTCCATCCACTCA
GTGTGGGACATGTTTTTAAAAAGGTCTCTCCTGCCTTCTTCGTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTA
CTTCTTCTTCTTCTTCCTCTTCTTCCTTCTTTCTTCCATTTTACTTTCCC
TCGTCCTCCTTCTTCTTTATCCTTTTCTCCAACATTTTCTTCTTCGTTTC
CCCGCTTTGTCTTCTCCTTCTCCTCCTTTTCCTCTCAATTTCCCACCTCT
CGTCCAATGCATGCACAATTCTTTATCCCTCCCACCCTGCTCCTCCCTCC
TGAACCCTATCTGTCCTTTCCTCCCTCCCCCCCTCCTCTCCGCCCTCTCG
TGGACCGCATCTTCTGATTCAGACTTAAGGTTCTTATCCCTAGCGCCTCT
TCGTCCTCTTCCCCGCCCTCTCCGGCGTGGCCGTCCTAAGAGACGCCCTT
TCCCTTGTCATTCCAGCTGCTGATGCTGTTGTCGCTGCTGCTGCGGGTGC
TCCTCTCTTCTTCACGACCCGAGTAGACAGAGCCCGTGTCTCCCTCTCCT
CTCCGTCCTCCTTCTCACCGTTCTTCCCTCCCCCTCTCTTCTTCTCGATG
GCGGCGGCAGTAGCAGCAGCACGCGTGGTGCGACGAGTAGGAGGAGGAGG
AGCAGCAGCAGCAGCAGCAGAAGCAGCAGAAATAGTTGTAGTAGTGGCAA
TGGTACCTGCAGCAATAGCCTTCTTCGCTGTTGTATTTAATGTCGATGCT
GCTGGCACTGCTGGTGCTGCTGGCCCTGCTGCTGTTACGGCCTTGGTCAC
GGTGGGAGT
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protein sequence of NO07G00400.1

>NO07G00400.1-protein ID=NO07G00400.1-protein|Name=NO07G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MPLCCLRDCLFLGGPFLKCSKQGGGGGSKEEEDEDVDEEAKIEGQEVYPF
NDELQYHQHRQALTSTTRSRSSRTSQPHHGLHPPTLSSLSSSSSSSSSSS
RPAANVSGWETLFNTLTTTQPPSQPQSQPRSRPPRHPSLSSSSRPSSRSS
SPFPGPSPSPPPSSSFLGLSIDPHCQQHQYRLYPSGGSGLASTPRHGSAE
ARACPYMCPVCFHYFPSILVASSCCSHYVCYGCLLGYVASRYEVSPSDLP
YLDVPFLLPIPCPLCASPSFAPAPVSRFAPVRSYEDEGREGGLEGGTEGG
MDGEMSVSVVGGEERMDGEDCKGGKDTGKESEKEEGKEVGEKQWQQEREH
DEKLNPGHSAAML*
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Synonyms
Publications