NO07G00360, NO07G00360 (gene) Nannochloropsis oceanica

Overview
NameNO07G00360
Unique NameNO07G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1795
Alignment locationchr7:139271..141065 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:139271..141065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025256DUF4203
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G00360 vs. NCBI_GenBank
Match: XP_005855892.1 (hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526] >EKU20468.1 hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 290.4 bits (742), Expect = 6.900e-75
Identity = 164/283 (57.95%), Postives = 202/283 (71.38%), Query Frame = 0 
Query:   52 RRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGIILTLGLILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKDLIELVSALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGT---RSRLPSWALALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGLNEELSMVLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRAGNGSDGEEARKMRASRRDRAFEEEEEKMERGAVAHVY 332
            RR P    ++F +LL LL+  +  AQ   S  LSPS+EV+GGI + LGLILAFGGK++M LYCAAAGFLFG +  ++ L R+Q  +D+GPN++LIEL+  L+ G+IGAALGLCLS+FA FLVAVLFGLVVT+A+L IPGT   R+RLP W LALIV+A+S+V Y LLE++LVV FTALVGS AFA GLD ILKTG NEEL+  LT    S   PF+GTEDMLPI+YAF  C VLG ITQVCVSR+    +DGEE                ++    GAVA +Y
Sbjct:    7 RRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEXXXXXXXXXXXXXXXXKDMESGGAVARLY 289
[Close]
BLAST of NO07G00360 vs. NCBI_GenBank
Match: EWM27352.1 (protein of unknown function DUF4203 [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 6.900e-75
Identity = 164/283 (57.95%), Postives = 202/283 (71.38%), Query Frame = 0 
Query:   52 RRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGIILTLGLILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKDLIELVSALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGT---RSRLPSWALALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGLNEELSMVLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRAGNGSDGEEARKMRASRRDRAFEEEEEKMERGAVAHVY 332
            RR P    ++F +LL LL+  +  AQ   S  LSPS+EV+GGI + LGLILAFGGK++M LYCAAAGFLFG +  ++ L R+Q  +D+GPN++LIEL+  L+ G+IGAALGLCLS+FA FLVAVLFGLVVT+A+L IPGT   R+RLP W LALIV+A+S+V Y LLE++LVV FTALVGS AFA GLD ILKTG NEEL+  LT    S   PF+GTEDMLPI+YAF  C VLG ITQVCVSR+    +DGEE                ++    GAVA +Y
Sbjct:   57 RRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEXXXXXXXXXXXXXXXXKDMESGGAVARLY 339
The following BLAST results are available for this feature:
BLAST of NO07G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855892.16.900e-7557.95hypothetical protein NGA_0557100 [Nannochloropsis ... [more]
EWM27352.16.900e-7557.95protein of unknown function DUF4203 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000865NSK000865Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00360.1NO07G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580037gene_2343Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100394g4gene3208Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00360.1NO07G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00360 ID=NO07G00360|Name=NO07G00360|organism=Nannochloropsis oceanica|type=gene|length=1795bp
TCGTTATGCTTCAGACCATAATGCTCCTCCTTGTCAGGTTTGTGCTTGCA
GAGAAGGACAACCTATTCAAGCGCATATATCCTGTCAGGTTCGACTCTCA
GAGCCGGTGGTTGGTGGCTTTCGAGAGAACAGAGTTATCCAAGCCAGAAG
CGGTTGTTCTGATGCCCGATGCCTTCAAACAGAGGCAAACTCAACAGCAG
TGTGAAGCGCACTCATCCCCCCCTTCATCCTTTCTACACACAGCACACAG
GCCTCCTCCAAGCTCCCGCTACCCTTCGAACACAAATTCTGACCCTCGTA
ATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCGACCAGCTTGCT
TTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATACCTATGCCCAAC
AGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGTTGGGGGGAATC
ATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAGAACGTCATGTC
TCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTATCATCTCGTACG
TAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGCCGAACAAGGAC
CTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATTGGAGCGGCCCT
AGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGCGGTATTGTTTG
GCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCACTCGTTCCCGC
CTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATTTCTATCGTCAT
ATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCACGGCTTTGGTCG
GTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGAAGACGGGGCTC
AACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAGTCTGCCCCGAT
TCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATACGCTTTTTGCG
CTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAAGCAGGAGGGCG
GGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGGGCAAGCAGGAG
GGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACGTGGCGCAGTGG
CACATGTGTACTAAGAGAAAAGTTGGTGGGGAGATGTGGAGAAGAGAGGG
AGGGAAAGAGGGAGGAGTTGGAGGTATGGGTTTGCATACATAAATATACA
TTGATGTGACAGCAGACGTAGCAGCAGCGGCAGGAGCAGGAGCAGCAGTA
GGAGCAAGAGCAGGAGCAGCAGTAGGAGCAAGAGCAGCAGTAGCAGCAGC
ATAATGATGAAACTTGGAGCGACTGAACCGCACCACGCCCAGCAGCGGGA
GCAGCACAGGGGCAGGAACAACTCAGAGGGGACGTAGAATGTATTACGGG
CATAAGCCACCGCCTTATTGGAACACAAGGGAGAGAAGCCGCCTCAGCTC
TGTGTTATGAAAGAGGAAAAGGGAGCAGTATGTGAATGTGAGAACACGTG
GAATAAAAGCGTTGATAAAGGAATGGAAAGGTTCACGTGCTGACTGTAGC
GGTCGACTAGCCTCATCTACATGGGCAAGGGAAAATGAAATTTGAACAGC
GCAGGTTTGTTCGATATTGTTTGTTCGAGAAGGGAAAAGAACGAGGGAGG
TTTCATAGCGTATCACACACGCGTAAAGAGAGAAAAAGAGAAAAGAAGAA
CGACCTCCATGGTAAGCCCCCCAAATGAAGGCCAGAAACATTATC
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protein sequence of NO07G00360.1

>NO07G00360.1-protein ID=NO07G00360.1-protein|Name=NO07G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPSNRGKLNSSVKRTHPPLHPFYTQHTGLLQAPATLRTQILTLVMASKLA
PRRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGIILTLGL
ILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKDLIELVS
ALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGTRSRLPSWAL
ALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGLNEELSM
VLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRAGNGSDG
EEARKMRASRRDRAFEEEEEKMERGAVAHVY*
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Synonyms
Publications