NO07G00340, NO07G00340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO07G00340 vs. NCBI_GenBank
Match: EWM27350.1 (protein of unknown function DUF218 [Nannochloropsis gaditana]) HSP 1 Score: 149.4 bits (376), Expect = 1.500e-32 Identity = 89/185 (48.11%), Postives = 105/185 (56.76%), Query Frame = 0 Query: 76 FHADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQH--KSRIHIDYTRTPLILSSGTIGPDDL-PSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVHPTRKAEE 258 F AD +LVLGGDRHRELTAVRLF + S P H IH+DY + PL +SSG + PD+L P+ L P I DRRA+CTLTNFTSL +F+A +R VLV+TS SHL RAL VGS+V RD +RAW WV GWE R VV W HP RK E+ Sbjct: 70 FRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIV----XXXXXXXXXXXXXXXXXXXXXXXXXXRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250
BLAST of NO07G00340 vs. NCBI_GenBank
Match: CEM28362.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 86.7 bits (213), Expect = 1.200e-13 Identity = 64/180 (35.56%), Postives = 94/180 (52.22%), Query Frame = 0 Query: 78 ADVILVLGGDRHRELTAVRLFHE-KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRG--RDYVRAWVWVVFGWEWRGVVAWVHPTRK 255 +D +LVLGGDR RE A+ L + ++S A+ +I+SSG + +D+ + + + FDRRA+ T+TNF + F+ VR+V+V TS H R +AV +VLG+ + V L I S Q E G R RD +RAW+WV G + V W+HPTR+ Sbjct: 73 SDALLVLGGDRAREAAALTLLKDGHLLLSPSAM-----------------VIISSGALSHEDITALGLSTDHVIFDRRAVDTVTNFVTTGPLFREHRVRQVMVATSDYHARRGIAVARIVLGSFRMRVVPLVIASSEKMRQ-ERGETRGRVIRDCLRAWLWVWAGLDLSSVTVWLHPTRQ 234
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_017296674.1 (YdcF family protein [Nodosilinea nodulosa]) HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12 Identity = 63/168 (37.50%), Postives = 86/168 (51.19%), Query Frame = 0 Query: 77 HADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPD-DLPSYLPPSLC---ITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGW 241 H D ILVLGG HRE TA R LA+ H Q +H I SS +GPD P + + IT D +A+ T+TNFT+L +F+ Q V + ++TS H+PRA A+ ++VLG+ I + S Q E R GRD VR+W+W+ GW Sbjct: 51 HPDGILVLGGQPHREATAAR----------LAMLHPQ----LH--------IWSSSGLGPDMAYPIFDALRVSRDRITLDYQAVDTVTNFTTLVKTFRQQHVHHLYLVTSDYHMPRARAIATIVLGSHHIAFTPVVAPSS----QATESPFRIGRDMVRSWIWLTTGW 192
BLAST of NO07G00340 vs. NCBI_GenBank
Match: ABM79388.1 (Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303]) HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10 Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL NFTSL Q +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELQLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGVRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_063396732.1 (YdcF family protein [Prochlorococcus sp. MIT 1306] >KZR61464.1 hypothetical protein PMIT1306_02245 [Prochlorococcus sp. MIT 1306]) HSP 1 Score: 75.9 bits (185), Expect = 2.100e-10 Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL+NFTSL + +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLSNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGVRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_036911516.1 (MULTISPECIES: YdcF family protein [Prochlorococcus]) HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10 Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL NFTSL + +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_063398784.1 (YdcF family protein [Prochlorococcus sp. MIT 1303] >KZR62205.1 hypothetical protein PMIT1303_02408 [Prochlorococcus sp. MIT 1303]) HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10 Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL NFTSL + +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: KZR68618.1 (hypothetical protein PMIT1313_02242 [Prochlorococcus marinus str. MIT 1313] >KZR71145.1 hypothetical protein PMIT1318_02287 [Prochlorococcus marinus str. MIT 1318]) HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10 Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL NFTSL + +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: OUW89206.1 (hypothetical protein CBD83_05940 [Prochlorococcus sp. TMED223]) HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10 Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHEKAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFG 240 +ILVLGGD RE +RL + + ++ +++Y + L+ G +PPS + D RA TL NFTSL + +G++ VL++TS HLPR++AVG VV AG+ +R GI S EEG +R D+VRAW WV G Sbjct: 40 LILVLGGDVDREHLGIRLARDLNLPLVVS-------GGSNLEYAQW-LVREVG----------IPPSQ-VQLDYRAKDTLGNFTSLVDELRLKGIQHVLLVTSEDHLPRSMAVGHVV--AGSRGIRLTGISVSCANQCREEGLRKRISDWVRAWAWVATG 178
BLAST of NO07G00340 vs. NCBI_GenBank
Match: WP_038552761.1 (YdcF family protein [Synechococcus sp. KORDI-52] >AII48348.1 hypothetical protein KR52_04145 [Synechococcus sp. KORDI-52]) HSP 1 Score: 73.9 bits (180), Expect = 8.000e-10 Identity = 60/167 (35.93%), Postives = 83/167 (49.70%), Query Frame = 0 Query: 80 VILVLGGDRHRELTAVRLFHE---KAIVSALALPHHQHKSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTSLSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGGGGQGEEGWLRRGRDYVRAWVWVVFGWEWR 244 ++LVLGGD RE RL + +VS + P + +LS PD +T D RA TL+NFTS+ QA GVR VL++TS HLPR++AVG VV G+ I + G+ + Q EG L++ D+VRA WV+ G + R Sbjct: 39 LVLVLGGDVDRERMGARLARQLDLPLLVSGGSNPEY------------AEWMLSEERFNPDR----------VTLDYRARDTLSNFTSVVDELQADGVRHVLLVTSEDHLPRSMAVGQVVAGSRGIQLTGVPVACREDCTQ--EGPLKQWSDWVRAVAWVMTGRDLR 181 The following BLAST results are available for this feature:
BLAST of NO07G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G00340 ID=NO07G00340|Name=NO07G00340|organism=Nannochloropsis oceanica|type=gene|length=777bpback to top protein sequence of NO07G00340.1 >NO07G00340.1-protein ID=NO07G00340.1-protein|Name=NO07G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bpback to top Synonyms
Publications
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