NO07G00250, NO07G00250 (gene) Nannochloropsis oceanica

Overview
NameNO07G00250
Unique NameNO07G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr7:103438..105031 -

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Properties
Property NameValue
DescriptionPeroxiredoxin q
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:103438..105031 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0055114oxidation-reduction process
GO:0042221response to chemical
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016209antioxidant activity
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR000866AhpC/TSA
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: CDP03042.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 161.8 bits (408), Expect = 2.000e-36
Identity = 83/149 (55.70%), Postives = 101/149 (67.79%), Query Frame = 0 
Query:   32 LSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            L+ V  G VAP FSLKDQ+ K V LS FKG KPVV++FYP D+TPGCTK+A AF  +   FKK GAEV GIS D    H AF +KY L   LLSD G   RK + VP  LFG L GR TYV+ K+  V+L+Y+NQF PE H++++L  L
Sbjct:   64 LAKVSKGSVAPSFSLKDQDGKTVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDPSSHKAFAKKYRLPFTLLSDEGNKVRKDWGVPADLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 211
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: OAY76432.1 (Peroxiredoxin Q, chloroplastic, partial [Ananas comosus])

HSP 1 Score: 161.8 bits (408), Expect = 2.000e-36
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 
Query:   35 VKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            V  GDV P+F+LKDQ+ K V LS FKG KPVV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D    H AF  KY L   LLSD G   RK + VP+ LFG L GR TYV+ ++  V+L+Y+NQF PE HVE++L  L
Sbjct:    1 VSKGDVPPNFTLKDQDGKTVSLSKFKG-KPVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFATKYRLPFTLLSDEGNKVRKGWGVPSDLFGTLPGRQTYVLDRNGVVQLVYNNQFQPEKHVEETLKLL 145
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_010917427.1 (PREDICTED: peroxiredoxin Q, chloroplastic [Elaeis guineensis])

HSP 1 Score: 161.4 bits (407), Expect = 2.600e-36
Identity = 93/186 (50.00%), Postives = 116/186 (62.37%), Query Frame = 0 
Query:    2 RVISVLAIS----FLAAAQAFMPTAT---PVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQ--DHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            ++IS+L+ S    F       +PTA+   P +      + V  GDV P F+LKDQN + V L+ FKG KPVV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D    H AF  KYGL   LLSD G   RK + VP+ LFG L GR TYVI +   V+L+Y+NQF PE HVE++L  L
Sbjct:   25 QIISILSKSSNSQFYGLRLPNLPTASPPRPFSPRTPIHAKVSKGDVPPPFTLKDQNGRNVSLTRFKG-KPVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPASHKAFATKYGLPFTLLSDEGNTVRKEWGVPSDLFGVLPGRQTYVIDRKGVVQLVYNNQFQPEKHVEETLKLL 209
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: ABK23115.1 (unknown [Picea sitchensis])

HSP 1 Score: 161.0 bits (406), Expect = 3.400e-36
Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 0 
Query:   19 MPTATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MP  T  TR   A++ V  G V P F+LKDQ+ ++V LS FKG KPVVL+FYP D++PGCTKEA AF  +   FKK GAEV GIS D  + H  F +KY L   LLSD G   RK + VP   FG+L GR TYVI K   V+L+Y+NQF PE H++++L  L
Sbjct:   56 MPARTFQTRRMIAVAKVSKGSVPPSFNLKDQDGRLVSLSKFKG-KPVVLYFYPADESPGCTKEACAFRDSYEKFKKAGAEVIGISGDSPESHKDFAKKYRLPFTLLSDDGNKLRKEWGVPGDFFGSLPGRETYVIDKKGVVQLVYNNQFQPEKHIDETLNVL 216
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: ABK23968.1 (unknown [Picea sitchensis])

HSP 1 Score: 161.0 bits (406), Expect = 3.400e-36
Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 0 
Query:   19 MPTATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MP  T  TR   A++ V  G V P F+LKDQ+ ++V LS FKG KPVVL+FYP D++PGCTKEA AF  +   FKK GAEV GIS D  + H  F +KY L   LLSD G   RK + VP   FG+L GR TYVI K   V+L+Y+NQF PE H++++L  L
Sbjct:   56 MPARTFQTRRMIAVAKVSKGSVPPSFNLKDQDGRLVSLSKFKG-KPVVLYFYPADESPGCTKEACAFRDSYEKFKKAGAEVIGISGDSPESHKDFAKKYRLPFTLLSDDGNKLRKEWGVPGDFFGSLPGRETYVIDKKGVVQLVYNNQFQPEKHIDETLNVL 216
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_021852405.1 (peroxiredoxin Q, chloroplastic-like [Spinacia oleracea] >KNA06994.1 hypothetical protein SOVF_175970 [Spinacia oleracea])

HSP 1 Score: 161.0 bits (406), Expect = 3.400e-36
Identity = 83/149 (55.70%), Postives = 104/149 (69.80%), Query Frame = 0 
Query:   32 LSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            +S VK G +AP FSLKDQ+ + V LS FKG KPVV++FYP D+TPGCTK+A AF  +   FKK GAEV GIS D    H AF +KY L   LLSD G   RK + VP+ LFGAL GR TYV+ K+  V+L+Y+NQF PE H++++L  L
Sbjct:   64 VSKVKEGTLAPAFSLKDQDGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFKQKYKLPYTLLSDEGNNVRKEWGVPSDLFGALPGRQTYVLDKNGVVRLVYNNQFQPEKHIDETLKFL 211
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_006843857.1 (peroxiredoxin Q, chloroplastic [Amborella trichopoda] >ERN05532.1 hypothetical protein AMTR_s00007p00263960 [Amborella trichopoda])

HSP 1 Score: 160.6 bits (405), Expect = 4.500e-36
Identity = 84/159 (52.83%), Postives = 108/159 (67.92%), Query Frame = 0 
Query:   22 ATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            ++P+ R+    + V  G VAP F+LKDQ+ + V LS FKG KPVV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D    H AF +KY L   LLSD G   RK + VP+ LFGAL GR TYV+ +D  ++L+Y+NQF PE HV+++L  L
Sbjct:   51 SSPLPRTT-IFAKVSKGGVAPSFTLKDQDGRNVSLSKFKG-KPVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDEGDKVRKEWGVPSDLFGALPGRQTYVLDRDGVIQLVYNNQFQPEKHVDETLKLL 207
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_008803394.1 (PREDICTED: peroxiredoxin Q, chloroplastic-like [Phoenix dactylifera])

HSP 1 Score: 160.6 bits (405), Expect = 4.500e-36
Identity = 83/146 (56.85%), Postives = 98/146 (67.12%), Query Frame = 0 
Query:   35 VKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQ--DHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            V  GDV P F+LKDQN + V L+ FKG KP V++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D    H AF  KYGL   LLSD G   RK + VP+ LFG L GR TYVI +   V+L+Y+NQF PE HVE++L  L
Sbjct:   66 VSKGDVPPPFTLKDQNGRNVSLTRFKG-KPAVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPASHKAFATKYGLPFTLLSDEGNKVRKEWGVPSDLFGVLPGRQTYVIDRKGAVQLVYNNQFQPEKHVEETLKLL 210
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_020088630.1 (peroxiredoxin Q, chloroplastic [Ananas comosus])

HSP 1 Score: 160.6 bits (405), Expect = 4.500e-36
Identity = 88/171 (51.46%), Postives = 111/171 (64.91%), Query Frame = 0 
Query:   12 LAAAQAFMPTATP-VTRSRGALS-MVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            L+   +  P++ P +   R  +S  V  GDV P+F+LKDQ+ K V LS FKG KPVV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D    H AF  KY L   LLSD G   RK + VP+ LFG L GR TYV+ ++  V+L+Y+NQF PE HVE++L  L
Sbjct:   47 LSTPSSSFPSSPPSLPHHRSPISAKVSKGDVPPNFTLKDQDGKTVSLSKFKG-KPVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFATKYRLPFTLLSDEGNKVRKGWGVPSDLFGTLPGRQTYVLDRNGVVQLVYNNQFQPEKHVEETLKLL 216
[Close]
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_006406769.1 (peroxiredoxin Q, chloroplastic [Eutrema salsugineum] >ESQ48222.1 hypothetical protein EUTSA_v10021501mg [Eutrema salsugineum])

HSP 1 Score: 160.2 bits (404), Expect = 5.900e-36
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 0 
Query:   12 LAAAQAFMPTATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQ--DHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            L+ + +F P ++   +S    + V  G  APDF+LKDQN K V L  FKG KPVVL+FYP DD+PGCTK+A +F  +   FKK GAEV GIS D    H AF  KY L   LLSD G   RK + VP  LFGAL GR TYV+ K+  V+L+Y+NQF PE H++++L  L
Sbjct:   46 LSHSSSFSPLSSSSLKS-SIFAKVNKGQAAPDFTLKDQNGKPVSLKKFKG-KPVVLYFYPADDSPGCTKQACSFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLRFL 212
The following BLAST results are available for this feature:
BLAST of NO07G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CDP03042.12.000e-3655.70unnamed protein product [Coffea canephora][more]
OAY76432.12.000e-3656.85Peroxiredoxin Q, chloroplastic, partial [Ananas co... [more]
XP_010917427.12.600e-3650.00PREDICTED: peroxiredoxin Q, chloroplastic [Elaeis ... [more]
ABK23115.13.400e-3652.47unknown [Picea sitchensis][more]
ABK23968.13.400e-3652.47unknown [Picea sitchensis][more]
XP_021852405.13.400e-3655.70peroxiredoxin Q, chloroplastic-like [Spinacia oler... [more]
XP_006843857.14.500e-3652.83peroxiredoxin Q, chloroplastic [Amborella trichopo... [more]
XP_008803394.14.500e-3656.85PREDICTED: peroxiredoxin Q, chloroplastic-like [Ph... [more]
XP_020088630.14.500e-3651.46peroxiredoxin Q, chloroplastic [Ananas comosus][more]
XP_006406769.15.900e-3650.89peroxiredoxin Q, chloroplastic [Eutrema salsugineu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000877NSK000877Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00250.1NO07G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579988gene_2331Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100584g4gene3195Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00250.1NO07G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00250 ID=NO07G00250|Name=NO07G00250|organism=Nannochloropsis oceanica|type=gene|length=1594bp
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAgtaagtttaa
ttgaccggtgatggttgtcgccaatgattattttttaatgagaccgtgga
gtggggaagggatcgttactcacttacatgatgaggaaaaatcggtgctg
gcgcctgcacacgtaggaaaaggggtatccaccctctagccccgtatgac
tgcttacatgagtcattatgctcgttcttgcaagtgtctttcctccctcc
ctttcctccctccgtcccaccagaatcagcttccactcctgaatcactct
cacgtcctcgcggcgatacccttcatatcccttctgaccttcaaattccc
ttctccttctctttttccaaacaccattcacgaaaacgtatgtagGTGGG
TGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGA
AGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCC
AAGGACGACACGCCCGGGTGCACCAAGGgtaagtcacgaaataaaaggga
gaaaggagatagctgttaagcgtggattggagtaggtgtgcgagtgcaag
ggaggtggagtgtgtgacacacgaggcgtttggtcgagttctgtcacctc
cccacacggacacacacccacacttaaagaagacaatctgtattacccat
tcacattcctttctctgcacctctctccccatccccaccatgactacagA
GGCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCG
AGGTGTTTGGCATCTCCAGTgtacgtacttctgctgccataacggcaaag
aaccagagggggtcgcgaggggacgagaaaagtagagagatttctttcgt
caagtctagagtcaattcaatgattaaagtcgcagagtcgtcaaggaatg
tcgtcaagggtgacctgaattcaaaatctgtgtattcatttcaaaaccgt
gtgcatccattctctctcctcattcgccctcccatcctccgtttcccccc
ctcccccatcgcagGACCAGGATCACTCCGCCTTCGTCGAGAAATACGGC
CTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTA
CAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACG
TGATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAATTCGCC
CCTGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAAACGTTCCA
TTTAAAATTTTGAATTATGTGTGTTAGTGAATGTTGGAGGTGTGGGGTGT
GGGAGAGCGGGAAGTGTTGATCAGTGGTACTTGATTTGATTTGCGTGAGC
GGACAGGAGGAACAAAAGATGTCCCGTGAAAGGGCAAAGAGAGAAGATGA
GAAATACATCTATAGAAACAAGCTAGCAGCCAATGCGAGCGCCA
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protein sequence of NO07G00250.1

>NO07G00250.1-protein ID=NO07G00250.1-protein|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRVISVLAISFLAAAQAFMPTATPVTRSRGALSMVKVGDVAPDFSLKDQN
NKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVF
GISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYV
IGKDQTVKLMYDNQFAPESHVEKSLMALV*
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Synonyms
Publications