NO07G00250, NO07G00250 (gene) Nannochloropsis oceanica

Overview
NameNO07G00250
Unique NameNO07G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr7:103438..105031 -

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Properties
Property NameValue
DescriptionPeroxiredoxin q
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:103438..105031 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0055114oxidation-reduction process
GO:0042221response to chemical
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016209antioxidant activity
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR000866AhpC/TSA
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_005855889.1 (peroxiredoxin q [Nannochloropsis gaditana CCMP526] >EKU20465.1 peroxiredoxin q [Nannochloropsis gaditana CCMP526] >EWM27365.1 peroxiredoxin q [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 7.600e-76
Identity = 145/179 (81.01%), Postives = 166/179 (92.74%), Query Frame = 0
Query:    1 MRVISVLAISFLAAAQAFMPTATP-VTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MR+ISVLA+S + AAQAFMP+  P + RSRG ++M+KVGD APDF+LKDQNNK+VKLS+FKGKK VVLFFYPKDDTPGCTKEAKAF+AAL DFKKKGAEVFGISSD+DH+AFV+KYGLQMQLLSDVGGATRKAY+VP+SLFGAL+GRVTYVIGKDQ ++L+YDNQFAPESHVEKSL  L
Sbjct:    1 MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: CEM19577.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 203.0 bits (515), Expect = 7.900e-49
Identity = 106/182 (58.24%), Postives = 131/182 (71.98%), Query Frame = 0
Query:    6 VLAISFLAAAQAFMPT--ATPVTRSR-------GALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            + A + L    +F+P+  A P+   R         LSMVKVG++APDFSLKDQ+ K+VKLSSFK KK VV+FFYP D TPGCTK+A+AFN AL DFKK GAEV G+SSD DHS F+  YGL+M LLSD+GG  RK ++VP ++FGAL GRVTYVIGKD  VK +YDN    ESH+ ++  AL
Sbjct:   13 ICAANALKETASFVPSPQALPIRFRRPSLSHRYAPLSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSESHIPQARAAL 194          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_005708785.1 (peroxiredoxin Q/BCP [Galdieria sulphuraria] >EME32265.1 peroxiredoxin Q/BCP [Galdieria sulphuraria])

HSP 1 Score: 181.8 bits (460), Expect = 1.900e-42
Identity = 91/147 (61.90%), Postives = 108/147 (73.47%), Query Frame = 0
Query:   32 LSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            L+MVK G+ APDFSLKDQ+   V+LS FKGKK V+L+FYPKDDTPGCTK+A  F  A+ DF + GAEV G+SSDQDH  FVEKY L  +LLSD G   RK Y+VP S FG L GRVTYVI +   VK +Y+NQF  E HVE++  AL
Sbjct:   54 LNMVKEGEAAPDFSLKDQDGNNVRLSDFKGKKAVILYFYPKDDTPGCTKQALCFREAIEDFAQLGAEVIGVSSDQDHRKFVEKYKLPFKLLSDEGSKVRKLYEVP-STFGILPGRVTYVIDRQGIVKKIYNNQFRSELHVEEAKKAL 199          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: CBN79489.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 174.5 bits (441), Expect = 3.000e-40
Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 0
Query:   34 MVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MV VG  APDF L +QN K V LSSFK KK VV+FFYPKD TPGCTKEA+ F + LA FKK GAEV GISSD DH+ FV++  L M LLSD+GG  RKA+KV  ++FG ++GRVTYV+ K+  V  MYDN     +H +++L AL
Sbjct:    1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKAL 145          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_005649012.1 (alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen [Coccomyxa subellipsoidea C-169] >EIE24468.1 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 170.2 bits (430), Expect = 5.700e-39
Identity = 87/152 (57.24%), Postives = 107/152 (70.39%), Query Frame = 0
Query:   31 ALSMVKVGDVAPDFSLKDQNNKIVKLSSFKG--KKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            AL   KVGD APDFSLKDQ+ K VKLSS++G   KPVVL+FYP D +PGCTK+AKAF  A+ +FKK GA V G+S D  + H  F  + G+  QLL+D G   RK Y V   L G LEGR TYVIGKD  VKL+++NQ+ PE HV+++L AL
Sbjct:    3 ALHATKVGDKAPDFSLKDQSGKTVKLSSYQGIFGKPVVLYFYPADASPGCTKQAKAFTDAIGEFKKAGATVVGVSGDDVESHQKFKSELGIPFQLLADEGNEVRKTYGVKKDLLGLLEGRQTYVIGKDGIVKLVFNNQWEPEKHVDEALKAL 154          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: ABK23972.1 (unknown [Picea sitchensis])

HSP 1 Score: 163.7 bits (413), Expect = 5.300e-37
Identity = 87/162 (53.70%), Postives = 107/162 (66.05%), Query Frame = 0
Query:   19 MPTATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MP  T  TR   A++ V  G V P F+LK+Q+ ++V LS FKG KPVVL+FYP D+TPGCTKEA AF  +   FKK GAEV GIS D  + H AF +KY L   LLSD G   RK + VP   FG+L GR TYVI K   V+L+Y+NQF PE HV+++L  L
Sbjct:   56 MPARTLQTRKMIAVAKVSKGSVPPTFNLKNQDGRMVNLSKFKG-KPVVLYFYPADETPGCTKEACAFRDSYEKFKKAGAEVIGISGDSPESHKAFAKKYRLPFTLLSDEGNKLRKEWGVPGDFFGSLPGRETYVIDKKGVVQLVYNNQFQPEKHVDETLKML 216          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: GAQ78506.1 (peroxiredoxin [Klebsormidium nitens])

HSP 1 Score: 163.7 bits (413), Expect = 5.300e-37
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 0
Query:   35 VKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            V +GD AP FSL DQN + V LS FKG KPVVL+FYPKDDTPGCTK+A +F  + ADFKK GAEV GIS+D  + H AF EKY L   LLSD   + R+A+ +    FGAL GR TYV+ K   V+L+++NQF+PE HV +++  +
Sbjct:   92 VSIGDEAPSFSLADQNGRTVSLSKFKG-KPVVLYFYPKDDTPGCTKQACSFRDSYADFKKAGAEVVGISADSPESHKAFAEKYDLPFTLLSDEDNSVRQAFGIKGDFFGALPGRETYVLDKKGVVQLVFNNQFSPEKHVAETIKVI 236          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: ABK21333.1 (unknown [Picea sitchensis])

HSP 1 Score: 162.9 bits (411), Expect = 9.100e-37
Identity = 86/162 (53.09%), Postives = 107/162 (66.05%), Query Frame = 0
Query:   19 MPTATPVTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MP  T  TR   A++ V  G V P F+LK+Q+ ++V LS FKG KPVVL+FYP D+TPGCTKEA AF  +   FK+ GAEV GIS D  + H AF +KY L   LLSD G   RK + VP   FG+L GR TYVI K   V+L+Y+NQF PE HV+++L  L
Sbjct:   56 MPARTLQTRKMIAVAKVSKGSVPPSFNLKNQDGRMVNLSKFKG-KPVVLYFYPADETPGCTKEACAFRDSYEKFKRAGAEVIGISGDSPESHKAFAKKYRLPFTLLSDEGNKLRKEWGVPGDFFGSLPGRETYVIDKKGVVQLVYNNQFQPEKHVDETLKML 216          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: XP_020680031.1 (peroxiredoxin Q, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 162.2 bits (409), Expect = 1.500e-36
Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 0
Query:   35 VKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            V  GDV P+F+LKDQN K V LS++KG KPVV++FYP D++PGCTKEA AF  +   FKK GAEV GIS D    H AF  KY L   LLSD G   RK + VP+ LFG L GR TYVI K   VKL+Y+NQF PE HV+++L  L
Sbjct:   65 VSKGDVPPNFNLKDQNGKNVSLSNYKG-KPVVVYFYPADESPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFASKYKLPFTLLSDEGNKVRKQWGVPSDLFGTLAGRETYVIDKKGVVKLVYNNQFQPEKHVDETLKLL 209          
BLAST of NO07G00250 vs. NCBI_GenBank
Match: PKU74791.1 (Peroxiredoxin Q, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 162.2 bits (409), Expect = 1.500e-36
Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 0
Query:   35 VKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSD--QDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            V  GDV P+F+LKDQN K V LS++KG KPVV++FYP D++PGCTKEA AF  +   FKK GAEV GIS D    H AF  KY L   LLSD G   RK + VP+ LFG L GR TYVI K   VKL+Y+NQF PE HV+++L  L
Sbjct:   74 VSKGDVPPNFNLKDQNGKNVSLSNYKG-KPVVVYFYPADESPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFASKYKLPFTLLSDEGNKVRKQWGVPSDLFGTLAGRETYVIDKKGVVKLVYNNQFQPEKHVDETLKLL 218          
The following BLAST results are available for this feature:
BLAST of NO07G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855889.17.600e-7681.01peroxiredoxin q [Nannochloropsis gaditana CCMP526]... [more]
CEM19577.17.900e-4958.24unnamed protein product [Vitrella brassicaformis C... [more]
XP_005708785.11.900e-4261.90peroxiredoxin Q/BCP [Galdieria sulphuraria] >EME32... [more]
CBN79489.13.000e-4059.31conserved unknown protein [Ectocarpus siliculosus][more]
XP_005649012.15.700e-3957.24alkyl hydroperoxide reductase/ thiol specific anti... [more]
ABK23972.15.300e-3753.70unknown [Picea sitchensis][more]
GAQ78506.15.300e-3755.48peroxiredoxin [Klebsormidium nitens][more]
ABK21333.19.100e-3753.09unknown [Picea sitchensis][more]
XP_020680031.11.500e-3657.53peroxiredoxin Q, chloroplastic [Dendrobium catenat... [more]
PKU74791.11.500e-3657.53Peroxiredoxin Q, chloroplastic [Dendrobium catenat... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000877NSK000877Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00250.1NO07G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579988gene_2331Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100584g4gene3195Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00250.1NO07G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00250 ID=NO07G00250|Name=NO07G00250|organism=Nannochloropsis oceanica|type=gene|length=1594bp
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAgtaagtttaa
ttgaccggtgatggttgtcgccaatgattattttttaatgagaccgtgga
gtggggaagggatcgttactcacttacatgatgaggaaaaatcggtgctg
gcgcctgcacacgtaggaaaaggggtatccaccctctagccccgtatgac
tgcttacatgagtcattatgctcgttcttgcaagtgtctttcctccctcc
ctttcctccctccgtcccaccagaatcagcttccactcctgaatcactct
cacgtcctcgcggcgatacccttcatatcccttctgaccttcaaattccc
ttctccttctctttttccaaacaccattcacgaaaacgtatgtagGTGGG
TGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGA
AGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCC
AAGGACGACACGCCCGGGTGCACCAAGGgtaagtcacgaaataaaaggga
gaaaggagatagctgttaagcgtggattggagtaggtgtgcgagtgcaag
ggaggtggagtgtgtgacacacgaggcgtttggtcgagttctgtcacctc
cccacacggacacacacccacacttaaagaagacaatctgtattacccat
tcacattcctttctctgcacctctctccccatccccaccatgactacagA
GGCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCG
AGGTGTTTGGCATCTCCAGTgtacgtacttctgctgccataacggcaaag
aaccagagggggtcgcgaggggacgagaaaagtagagagatttctttcgt
caagtctagagtcaattcaatgattaaagtcgcagagtcgtcaaggaatg
tcgtcaagggtgacctgaattcaaaatctgtgtattcatttcaaaaccgt
gtgcatccattctctctcctcattcgccctcccatcctccgtttcccccc
ctcccccatcgcagGACCAGGATCACTCCGCCTTCGTCGAGAAATACGGC
CTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTA
CAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACG
TGATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAATTCGCC
CCTGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAAACGTTCCA
TTTAAAATTTTGAATTATGTGTGTTAGTGAATGTTGGAGGTGTGGGGTGT
GGGAGAGCGGGAAGTGTTGATCAGTGGTACTTGATTTGATTTGCGTGAGC
GGACAGGAGGAACAAAAGATGTCCCGTGAAAGGGCAAAGAGAGAAGATGA
GAAATACATCTATAGAAACAAGCTAGCAGCCAATGCGAGCGCCA
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protein sequence of NO07G00250.1

>NO07G00250.1-protein ID=NO07G00250.1-protein|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRVISVLAISFLAAAQAFMPTATPVTRSRGALSMVKVGDVAPDFSLKDQN
NKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVF
GISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYV
IGKDQTVKLMYDNQFAPESHVEKSLMALV*
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Synonyms
Publications