NO07G00160, NO07G00160 (gene) Nannochloropsis oceanica

Overview
NameNO07G00160
Unique NameNO07G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3004
Alignment locationchr7:58578..61581 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:58578..61581 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009247glycolipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0001733galactosylceramide sulfotransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR009729Gal-3-0_sulfotransfrase
Homology
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BLAST of NO07G00160 vs. NCBI_GenBank
Match: EWM22256.1 (hypothetical protein Naga_100195g15 [Nannochloropsis gaditana])

HSP 1 Score: 408.3 bits (1048), Expect = 4.200e-110
Identity = 198/360 (55.00%), Postives = 259/360 (71.94%), Query Frame = 0 
Query:  250 PLVCPYYDDIPSPFPASFWYVKNPKTASSTLGGVFRSVAAHHGVEMLNSDEIHMDLPQLKRTIAEVLAAFGSAVAPDPPLGLANHMPFDISARDIFRKTAPVMLFTSVREPVAQFHSHFVEVCKQGKKRRESSKCFGPAVQERTAMANAMEPDAQFAYIRGDASDAESAAAQYDFVFLRERLEESLVAFMIMYGLDFADIAHVAAKVRTELYPGPRELPEELNELIRTKTTEDAKLWAKANVMLDEKITAINGHCGGKAYFSSMLTVFRKLQKVVMQECTDFRGWYKKHGFSTVLRYWGDNGQAPRCRDFVVRREMRAWQKHHVTEMLRAAMAKSRGGNTA-PILESKGPA-VNGWGLPK 608
            PL C  YDD PS FP++FWYVK+ KTASSTL GVFRSVAAH GV MLN++E+ MD+ QLK    +V++A  S     P LGLANHMP +  +  + +   P++LFTSVREPV  FHS F+  C+  + ++ +  C+G  V ++ AMA  MEP+ Q  YIRGDA D ESAAAQY  +F+RERLEESLV FMI+YGLDFADI H+++KVRT++YP   ++P ELNEL+  K+ EDA+L+A+AN +LD+KI  IN +C G+AYF+SML VF +LQ  V+ EC  +  WY++HGFSTVL YW DNG APRCRDFVVRREMRAWQ+      +R A+A++    +A    E  G + ++GWG+PK
Sbjct:  136 PLACTAYDDRPSQFPSNFWYVKSHKTASSTLAGVFRSVAAHRGVTMLNAEEVRMDVEQLKSAKQKVISAMNSVFGEVPRLGLANHMPLNTESYALLKSDGPLLLFTSVREPVGYFHSIFLHKCRNSEMKK-NVDCYGAVVDKKVAMATTMEPNPQLNYIRGDAVDVESAAAQYGLIFVRERLEESLVVFMILYGLDFADIVHLSSKVRTDMYPDSEKMPVELNELVERKSQEDARLYARANALLDDKIATINKNCKGEAYFASMLAVFSRLQATVVAECEKYNRWYEEHGFSTVLTYWNDNGVAPRCRDFVVRREMRAWQEEDKAIAIRVAVAEALAAESARSSSEGSGASELDGWGMPK 494
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BLAST of NO07G00160 vs. NCBI_GenBank
Match: EWM29597.1 (Sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 373.2 bits (957), Expect = 1.500e-99
Identity = 189/378 (50.00%), Postives = 251/378 (66.40%), Query Frame = 0 
Query:  218 DSTLADIEKKDNATSETVTTTASMAEAATTAFPLVCPYYDDIPSPFPASFWYVKNPKTASSTLGGVFRSVAAHHGVEMLNSDEIHMDLPQLKRTIAEVLAAFGSAVAPDPPLGLANHMPFDISARDIFRKTAPVMLFTSVREPVAQFHSHFVEVCKQGKKRRESSKCFGPAVQERTAMANAMEPDAQFAYIRGDASDAESAAAQYDFVFLRERLEESLVAFMIMYGLDFADIAHVAAKVRTELYPGPRELPEELNELIRTKTTEDAKLWAKANVMLDEKITAINGHCGGKAYFSSMLTVFRKLQKVVMQECTDFRGWYKKHGFSTVLRYWGDNGQAPRCRDFVVRREMRAWQ---KHHVTEM--LRAAMAKSRGGNTA 591
            D + +D+    NA+    ++  +   +      L CP +DD PS FP++FWYVKNPKT+SSTL GVFRSVAAHH V MLN  + HM + +++ T  +V++A  S  +  P LGL+NH+ F+   RD      P++LFTSVREP+ +F+S F+E C Q  K  ++  CFG AV E+  MA  MEP++Q A IRG+A+D +SA AQYDF+F+RER +ESLV FMI+YGLDFADI H+++KVRT  YPG  ++P  LN LIRT + ED KLW  AN +LDEKI  IN  CGG+AY +S L  F +LQ  V   C + + WY  HGFSTV  YWGDNGQAPRC DFVVRRE+  WQ   ++H  ++     A + S GG+ +
Sbjct:   47 DLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQC-QNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQDTVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEGRNHAIQVGGTAGASSNSSGGDVS 423
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BLAST of NO07G00160 vs. NCBI_GenBank
Match: XP_005855341.1 (hypothetical protein NGA_0093800 [Nannochloropsis gaditana CCMP526] >EKU21016.1 hypothetical protein NGA_0093800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 299.7 bits (766), Expect = 2.100e-77
Identity = 152/302 (50.33%), Postives = 205/302 (67.88%), Query Frame = 0 
Query:  218 DSTLADIEKKDNATSETVTTTASMAEAATTAFPLVCPYYDDIPSPFPASFWYVKNPKTASSTLGGVFRSVAAHHGVEMLNSDEIHMDLPQLKRTIAEVLAAFGSAVAPDPPLGLANHMPFDISARDIFRKTAPVMLFTSVREPVAQFHSHFVEVCKQGKKRRESSKCFGPAVQERTAMANAMEPDAQFAYIRGDASDAESAAAQYDFVFLRERLEESLVAFMIMYGLDFADIAHVAAKVRTELYPGPRELPEELNELIRTKTTEDAKLWAKANVMLDEKITAINGHCGGKAYFSSMLTVFRK 520
            D + +D+    NA+    ++  +   +      L CP +DD PS FP++FWYVKNPKT+SSTL GVFRSVAAHH V MLN  + HM + +++ T  +V++A  S  +  P LGL+NH+ F+   RD      P++LFTSVREP+ +F+S F+E C Q  K  ++  CFG AV E+  MA  MEP++Q A IRG+A+D +SA AQYDF+F+RER +ESLV FMI+YGLDFADI H+++KVRT  YPG  ++P  LN+LIRT + ED KLW  AN +LDEKI  IN  CGG+AY +S L  F +
Sbjct:   47 DLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQC-QNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNDLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNR 347
The following BLAST results are available for this feature:
BLAST of NO07G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22256.14.200e-11055.00hypothetical protein Naga_100195g15 [Nannochlorops... [more]
EWM29597.11.500e-9950.00Sulfotransferase [Nannochloropsis gaditana][more]
XP_005855341.12.100e-7750.33hypothetical protein NGA_0093800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL102nonsL102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00160.1NO07G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579931gene_2321Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00160.1NO07G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00160 ID=NO07G00160|Name=NO07G00160|organism=Nannochloropsis oceanica|type=gene|length=3004bp
CGTCCTCATCGCCGTTCCCGATATGGGCTCATACACCACTTCCCCACCCA
TGCCACGAACAGACAGGCCTAAATCAATTTGTTTTCACTCCCACGTCCAA
GCCAAGTGTCTATATCTGCCTCCCACTACTGTCCACAGgtacgcgacttc
tcgtaccgtaccctgcacaccacaatctcctcctcccatcatcgctggca
gggtcgcgtggcgtgagcatgtctgagccccatgcgtgttagtcaatctt
agcagtatctctgccttattaaacataccttcaaaagtgtgcccttcccg
tcgattgatgcccactatccacctttcaacatcgcatgcccatatacatc
atcgggccatccctccctccagtcctttaggccgaccttaaagtatgagg
gcaaggcaccgcatagagcttcatccgccattttttcattgctccaaaat
tcattctcgtttgttcctgctggccaaatacgcaggcaggataccgtctg
ccatttcatacatccgtctctccgtgaatactccaccgctccttctttcc
ctccctcccttttcatctgatcgacaaggcaccaataccgttctctctcc
tctttatctcctatcctcgagtttgtccacatattcatccaaatttgccc
ccttctggtctctgacaaatagtattgcggacgaaggctcaaactctacg
ccactaggcatgatgacgttttcagccacagcatgtagtcatgctcatgc
ccgattctcatcccaacgccgtcaatttgctctgaatattttctcctacg
aaggtcaacaaaaacaacatcccctcttccttattttcatgatcacccat
cgaacgatgctcattaaaattttgtcgccctctcctcctctccccttcct
ttccagCAGGATGGCTCGAGATGAGGATGACAAGCGACCCCGTGGCGCTC
GAGCCATCATCTCTTGGTGCATGGCCTCTTCTTGGAGACGGGCTTTATTG
GGTTGTACACTGGGGATATTTGCAATGGTCTGGTTTGTGACCCACCTGGC
AAGCAACATGGACGGGGGCAGTAGCGGAAGCAGCATGCTGAGTACGTCCA
CAATCACCAACAGCAGAGACAAGAATGCCAACTTTACCCCTTTCACGGCT
TCATCTTTACCCCCTCACATCGAGGGCAATACCATCATGGCGGAGATGCC
CTCAGTCGCTGCTATCCCTCTAAAGAGCGTGAAGAGCGAAGATGACGTCT
CTACCCTCGAGCACGCCTCCCCTTTGCTCCGCACCACGAAAGAGGGGGGA
GACACCCCCCAGCTACCATTTGTATCTGCGAAAAAAAATAATAATGAAGG
TGAAAGTCTCGGGAACAACGCCGTCATCACGACCATCACATCCATCGACA
GCGGCGGCATCAGCAAGGGCAACGAGGACAACGGTGACACGGACTCCACT
CTTGCGGACATTGAGAAGAAAGACAATGCGACCTCTGAGACCGTAACCAC
TACTGCTAGCATGGCTGAGGCTGCTACAACAGCTTTCCCCCTCGTCTGTC
CCTATTACGACGACATACCTAGCCCGTTTCCCGCCTCTTTTTGGTACGTC
AAGAACCCCAAGACAGCCAGCAGCACACTTGGCGGCGTCTTCCGCAGTGT
AGCAGCCCACCACGGCGTGGAAATGCTCAACTCGGACGAAATACACATGG
ACTTACCCCAGCTTAAGCGTACCATCGCCGAGGTGCTGGCGGCCTTCGGC
AGTGCCGTGGCTCCCGATCCGCCTCTCGGGCTGGCCAACCACATGCCATT
CGATATTAGTGCCCGCGACATTTTCAGAAAGACTGCGCCTGTGATGCTGT
TTACCTCGGTTCGTGAGCCTGTTGCTCAATTTCATTCGCACTTCGTGGAG
GTTTGCAAACAAGGGAAGAAGAGAAGAGAAAGTAGTAAATGTTTTGGCCC
GGCGGTACAGGAGCGGACGGCGATGGCGAATGCCATGGAACCCGACGCTC
AGTTTGCCTATATTCGCGGGGACGCATCTGATGCCGAGTCTGCTGCGGCA
CAGTATGATTTTGTGTTTCTGCGGGAGCGCCTGGAGGAATCGTTGGTGGC
CTTTATGATCATGTACGGCCTGGACTTTGCCGACATTGCACATGTTGCCG
CCAAGGTGCGCACGGAATTATACCCTGGGCCGAGAGAGCTGCCCGAAGAA
TTGAATGAACTGATTCGCACCAAGACAACCGAGGACGCTAAGCTTTGGGC
CAAGGCAAACGTGATGCTGGATGAGAAAATTACTGCCATAAATGGCCACT
GTGGTGGTAAGGCGTACTTTTCGTCAATGCTAACAGTTTTTCGGAAATTG
CAAAAAGTGGTGATGCAGGAATGCACAGATTTTCGTGGTTGGTACAAGAA
GCATGGTTTTTCGACCGTGCTCCGGTATTGGGGCGACAATGGCCAGGCAC
CCCGATGTCGAGACTTTGTGGTACGCCGTGAGATGCGTGCTTGGCAAAAG
CATCATGTGACGGAAATGCTCAGGGCCGCGATGGCTAAATCAAGAGGAGG
AAATACAGCGCCGATCTTGGAATCAAAAGGACCAGCAGTAAATGGCTGGG
GTCTACCAAAAGATGCATGATTGCCTTGACGATTTCGATGAAATTAGAAA
AAGGAAGGCAGTACGCAGGACAGTATGATAGCGTTTGTATATATTTATTT
TAAATGTGGCGCGATTGGTACTCTTTCTCCATTTGATTGGAAAGTGAAGT
GTACAGATTTAAACTTTAATAGAACCTCCAGATTCTTCAATTTTTTCCGA
GGAGGATTCACGGGGTCATCAAAACGGCTTCTCCAAGGCAGATAACCGTG
CGTTGGCCGGTCGTGGGGGCTTCAAGCGAATAAAAGACTATGGTCTGGCA
TGTATATGACCATAGCCTACCAGGTGACCCATGCTGATAACTATAAAGCA
TTACCGCCAAGATTATAAATTTGTTGTCATAACATAAGCATCAAAGTAAG
CCCG
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protein sequence of NO07G00160.1

>NO07G00160.1-protein ID=NO07G00160.1-protein|Name=NO07G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MGSYTTSPPMPRTDRPKSICFHSHVQAKCLYLPPTTVHSRMARDEDDKRP
RGARAIISWCMASSWRRALLGCTLGIFAMVWFVTHLASNMDGGSSGSSML
STSTITNSRDKNANFTPFTASSLPPHIEGNTIMAEMPSVAAIPLKSVKSE
DDVSTLEHASPLLRTTKEGGDTPQLPFVSAKKNNNEGESLGNNAVITTIT
SIDSGGISKGNEDNGDTDSTLADIEKKDNATSETVTTTASMAEAATTAFP
LVCPYYDDIPSPFPASFWYVKNPKTASSTLGGVFRSVAAHHGVEMLNSDE
IHMDLPQLKRTIAEVLAAFGSAVAPDPPLGLANHMPFDISARDIFRKTAP
VMLFTSVREPVAQFHSHFVEVCKQGKKRRESSKCFGPAVQERTAMANAME
PDAQFAYIRGDASDAESAAAQYDFVFLRERLEESLVAFMIMYGLDFADIA
HVAAKVRTELYPGPRELPEELNELIRTKTTEDAKLWAKANVMLDEKITAI
NGHCGGKAYFSSMLTVFRKLQKVVMQECTDFRGWYKKHGFSTVLRYWGDN
GQAPRCRDFVVRREMRAWQKHHVTEMLRAAMAKSRGGNTAPILESKGPAV
NGWGLPKDA*
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Synonyms
Publications