NO06G04680, NO06G04680 (gene) Nannochloropsis oceanica

Overview
NameNO06G04680
Unique NameNO06G04680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr6:1344760..1345734 -

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Properties
Property NameValue
DescriptionExtl3 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1344760..1345734 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR027555mo5U34_MeTrfas-like
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
Homology
BLAST of NO06G04680 vs. NCBI_GenBank
Match: EWM20167.1 (extl3 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 136.3 bits (342), Expect = 1.600e-28
Identity = 86/245 (35.10%), Postives = 127/245 (51.84%), Query Frame = 0
Query:   66 SCGIF---CYWQEDAGIIQVPKSSWERVSDIEYAIWKNLEKMGPDDRNPEHAEGLGAFAALP--SDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYL-ALDNCIYKDNTIHGQRVNLLSLPVEELPATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSAL---LHPIRVKRVFLQHFLRMFDTLYIGDHHTSFAKARGFEESGYYFIGRKK 302
            SCG +   C++  D G+ +V K  W+     E   W  LE+    DRN EHA     +AAL     +G+ +E GAGP+TQ+  I   +  ++ K++ L EP    Y+ A+D C YK+ ++ G    ++ +P+E       +DTV+AIN +EHV  A      V +AL PGGILVF ER++  PD D + + +     LHPIR+   F       FD LY  +    +         GYY+IGRK+
Sbjct:   10 SCGAYNDKCFFHPDYGVAKVSKERWQGAQKAENNTW--LEQR-TSDRNEEHARNFNNYAALTMYGKMGDVIEFGAGPFTQSLTIFK-KTGLKPKSVTLVEPLAHTYVDAVDACRYKNGSLPGLNTTIMPVPIENFAQDRQYDTVIAINFVEHVQDAFLAYDKVLNALNPGGILVFHERFW--PDYDGIEVANRREFDLHPIRLSNRFGHWMSTEFDLLYEQEQRERWGNI------GYYWIGRKR 242          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: KOO21241.1 (extl3 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 136.0 bits (341), Expect = 2.100e-28
Identity = 99/318 (31.13%), Postives = 143/318 (44.97%), Query Frame = 0
Query:    4 CFLGKCFCLPGRTGSGCQNIRTADWLLTGDHCPVFHTLKEVQEKPVQEYPVEACHIAEK----DPLSCGIFCYWQEDA--------GIIQVPKSSWERVSDIEYAIWKNLEKMGPDDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYL-ALDNCIYKDNTIHGQRVNLLSLPVEELPATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSA----LLHPIRVKRVFLQHFLRMFDTL----YIGDHHTSFAKARGFEESGYYFIGRK 301
            C LG C C  G  G  C                         E+  Q     +CH AE+       S G+  + Q D         GI++V +  W+     E ++W         DRN  HA     + ALP  LG+ LEIG+GPYTQT ++L +R      +I L +P    ++     C YK+  +HG+ V +L++P E L  T   DT+V ++V++ V      L A Y+ALKPGG LVF +R F D   DA   G+A    + HP  VK   L HFL +F+ +    +  +      +    ++   YFIGRK
Sbjct:  119 CLLGVCICGDGSGGETC-------------------------ERGGQRIFNRSCHAAEELAYGGAQSDGLTRHAQHDVCAFYEPAYGILRVDERRWKFAQLWEASLWSAAPASQTTDRNAHHALQFDQYRALPDALGHVLEIGSGPYTQTQSLL-LRPGSSTSSITLVDPLARVFMDRTKGCTYKEQRLHGRPVRVLNVPAESLSLTHVADTLVMVSVLQSVRDVPAVLQAAYNALKPGGWLVFADRVF-DARWDAFRAGAAPFWDVGHPCAVKETLLDHFLSVFEEVQRRRWAKEPRAGDGRHPALQDEQIYFIGRK 409          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: OGZ18363.1 (hypothetical protein A2V72_01160 [Candidatus Nealsonbacteria bacterium RBG_13_37_56])

HSP 1 Score: 101.3 bits (251), Expect = 5.800e-18
Identity = 75/254 (29.53%), Postives = 115/254 (45.28%), Query Frame = 0
Query:   67 CGIFCYWQEDAGIIQVPKSSWERVSDIEYAIWKNLEKMGPDDRNPEHAEGLGAFAALPS-DLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKD-----------NTIHGQR--VNLLSLPVEELPATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGS-ALLHPIRVKRVFLQHFL-RMFDTLYIGDHHTSFAKARGFEE---SGYYFIGRKK 302
            C    Y+  + GI  + ++ W      E  +W    K    D N    E    +  L +    N +E+G GP+T    IL +   V+ +NI+L +P +  YL   NC YK            N++ G++  VN  S P+EE    E FD +V I+V+EH +        +    K G   VF +++FD  +    VL      HP+RV++  L +FL   F TL     +  FA +RG  +    G+Y+IG KK
Sbjct:   40 CNDSKYYNPEKGITSIDRTRWLDAQQAEKNVWLRDFKRLNQDNNKLKKENFDNYDLLKNLKFNNVIELGCGPFTNIRYILKI---VQAENIHLLDPLLKDYLKKTNCTYKSGKLVLGDNNFLNSVFGKKRSVNFYSCPIEEFNCPEKFDLIVMIDVLEHCYDFNKIANKILETSKKGTYFVFQDKFFDINNISGEVLTKYDAAHPLRVRKELLLNFLEENFITLLSKTKY--FACSRGERDLSFYGFYYIGYKK 288          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: KOO23358.1 (hypothetical protein Ctob_005151 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 84.7 bits (208), Expect = 5.700e-13
Identity = 58/162 (35.80%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  144 ILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELP--ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALLHPIRVKRVFLQHFL-RMFDTLY--IGDHHTSFAKARGFEESGYYFIGRK 301
            +LN R ++   +I L +P I  YL   N +YK+  ++G  V+L S+  EE+P    E FD VV IN IEH F+A   L   Y  L+P G+ +F ER     + D       + HP+R+   F   +L  ++D +Y   G H T     + F E   YFIGRK
Sbjct:    1 MLNARPDINATSITLVDPGINGYLRSGNTLYKNGFLNGVPVDLHSIGAEEVPYSENETFDVVVMINCIEHTFNAFATLETAYRLLRPRGLFIFQERAVRLSEND------QIYHPVRLPLHFYDWWLGLLYDEIYRFRGKHPT----LKRFLEGEVYFIGRK 152          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: WP_086425288.1 (class I SAM-dependent methyltransferase [Nitrospira cf. moscoviensis SBR1015] >OQW31646.1 hypothetical protein A4C66_04875 [Nitrospira sp. HN-bin3])

HSP 1 Score: 75.1 bits (183), Expect = 4.500e-10
Identity = 70/253 (27.67%), Postives = 107/253 (42.29%), Query Frame = 0
Query:   82 VPKSSWERVSDIEYAIW--------------------KNLEKMGP--------DDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELP-ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALLHPIRVKRVFL-QHFLRMFDTLYIGDHHTSFAKARGFEESGYY----FIGRK 301
            V +  W++  + E A W                    K L K GP        DD N   AE    +  LPS   N +E+GAGPYT    IL  R+     ++  ++P I  YL      + +       V +   P+E+ P A+++FD VV INV++H   ++  +       KPGG LV G+   +  D     +G  + HPIR+    L +  L  F  +     +   ++A G   S +Y    FIG+K
Sbjct:    8 VSRERWQQAQEWEGAYWRAQHPARPDRVSSSLQKLTAKVLGKQGPETEQPSAGDDWNHWWAEQFEQYQCLPSTFENVIEVGAGPYTNVRVILEGRS---ASHLICSDPLIREYLRFKG-QWLERMWQAGAVYVDDHPLEDCPFASDYFDLVVVINVLDHCRDSLACIRQATRITKPGGYLVIGQDLTNIDDVQR--IGDDIGHPIRIDHDTLDKELLNGFRKV----RYKILSRAEGRNPSAHYGTYVFIGQK 250          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: WP_090748975.1 (class I SAM-dependent methyltransferase [Candidatus Nitrospira nitrosa] >CUS36420.1 putative Methyltransferase type 11 [Candidatus Nitrospira nitrosa])

HSP 1 Score: 71.6 bits (174), Expect = 5.000e-9
Identity = 58/197 (29.44%), Postives = 89/197 (45.18%), Query Frame = 0
Query:  107 DDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELP-ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALLHPIRVKRVFL-QHFLRMFDTLYIGDHHTSFAKARGFEESGYYFIGRKK 302
            DD N   +E  G +  LP    N +E+G GPYT    IL  R      ++Y ++P I +Y+  D     +    G  + +   P+E+ P A ++FD  V INV++H   ++  L  V    KPGG +V G+   D   +D    G  + HPIR+    L Q  L   + +       +  +        Y FIGRK+
Sbjct:   61 DDWNHWWSEQFGQYEELPKAFENVVELGCGPYTNMRVILQRR---PATHVYGSDPLIRKYIKFDGQWLAEMWKAG-NIFIDDHPLEDCPFADDYFDLTVLINVLDHCRDSLACLKQVVRITKPGGYVVVGQDLSD--VEDVKRTGDDIGHPIRIDHHILDQELLSRCEPIRYKVLERNAGRNPEAHYGTYIFIGRKR 251          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: OYT21275.1 (hypothetical protein CCU26_02015 [Nitrospira sp. UW-LDO-01])

HSP 1 Score: 70.9 bits (172), Expect = 8.500e-9
Identity = 57/197 (28.93%), Postives = 90/197 (45.69%), Query Frame = 0
Query:  107 DDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELP-ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALLHPIRVKRVFL-QHFLRMFDTLYIGDHHTSFAKARGFEESGYYFIGRKK 302
            DD N   +E    +  LP+   N +E+G GPYT    IL  R+ +   ++Y ++P I +Y+  D     +    G  + +   P+E+ P A  +FD  V INV++H   ++  L  V    KPGG +V G+   D  D +    G  + HPIR+    L Q  L   + +       +  +        Y FIGRK+
Sbjct:   61 DDWNHWWSEQFAQYEELPTAFENVVELGCGPYTNMRVILERRSAM---HVYGSDPLIRKYIKFDGQWLAEMWKAG-NIFIDDHPLEDCPFAANYFDLTVLINVLDHCRDSLACLKQVVRITKPGGYVVVGQDLSDVEDVNR--TGDDIGHPIRIDHHILDQELLSRCEPIRYKVLDRNAGRNPEAHYGTYIFIGRKR 251          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: KRT66125.1 (type 11 methyltransferase [Candidatus Dadabacteria bacterium CSP1-2])

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-8
Identity = 64/258 (24.81%), Postives = 103/258 (39.92%), Query Frame = 0
Query:   79 IIQVPKSSWERVSDIEYAIWKNLEKMGP----------------------DDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELP-ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALL-HPIRVKRVFLQHFL-RMFDTLYIGDHHTSFAKARGFEESGYYFIGRKKEIFSAFDEPG 312
            II++ +  WE   + E   W   +KM                        DD N         +  LP  + N +E+G GPYT   N   +      K+++L++P I  Y+        +    G  + +    +EE P A ++FD  V INV++HV  A   +    +  KPGGIL+ G+   D+ D   +      + HPI++   +L  F+ R F++L          +A       Y F G+K       D  G
Sbjct:   20 IIKISRERWEMAQEWEKEHWVKTQKMRAKYGKNIIWKFIALLGLKSKYRGDDWNYWWKRQFNDYNFLPEVIENAIELGCGPYT---NFRLIIERCVPKHLFLSDPLIRTYVNFKQTFVSEMYRKGLCI-IDDQTIEEFPFAPDYFDLCVMINVLDHVQDAELCMKNAINITKPGGILIIGQDLTDEEDMHRIEGAEGEVGHPIKIGHDWLDKFIKRKFESLIYKILPREEGRAPIAHYGTYIFAGKKLNYKKTKDSDG 273          
BLAST of NO06G04680 vs. NCBI_GenBank
Match: OGF61546.1 (hypothetical protein A2Y62_01840 [Candidatus Fischerbacteria bacterium RBG_13_37_8])

HSP 1 Score: 67.4 bits (163), Expect = 9.400e-8
Identity = 52/190 (27.37%), Postives = 84/190 (44.21%), Query Frame = 0
Query:   84 KSSWERVSDIEYAIWKNLEKMGPDDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNC----IYKDNTIHGQRVNLLSLPVEELP-ATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLGSALLHPIRVKRVFLQHFL 269
            K+ + R +    +I K       DD N   A     +  +P +L N +E+G GPYT    IL      +I ++  ++P +  Y+          +K+ TI      +     EE P A+ +FD  + INV++HV  A+  L       K GG L+ G+   +   +DA  +G  + HPIR+    L   L
Sbjct:   37 KTLYRRFAQWSKSIIKEKMHNSGDDWNLWWANKFNYYELIPQELDNVIELGCGPYTNMRIIL---QKFKINHVVCSDPLVLHYVTFKGRWLAEAWKERTI-----LIDDHKAEECPFASNYFDLTILINVLDHVHDALLCLRQAIRITKSGGHLIIGQDLTN--FEDARRIGDDIGHPIRIDHEMLDRVL 216          
The following BLAST results are available for this feature:
BLAST of NO06G04680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM20167.11.600e-2835.10extl3 protein, partial [Nannochloropsis gaditana][more]
KOO21241.12.100e-2831.13extl3 [Chrysochromulina sp. CCMP291][more]
OGZ18363.15.800e-1829.53hypothetical protein A2V72_01160 [Candidatus Neals... [more]
KOO23358.15.700e-1335.80hypothetical protein Ctob_005151 [Chrysochromulina... [more]
WP_086425288.14.500e-1027.67class I SAM-dependent methyltransferase [Nitrospir... [more]
WP_090748975.15.000e-929.44class I SAM-dependent methyltransferase [Candidatu... [more]
OYT21275.18.500e-928.93hypothetical protein CCU26_02015 [Nitrospira sp. U... [more]
KRT66125.11.100e-824.81type 11 methyltransferase [Candidatus Dadabacteria... [more]
OGF61546.19.400e-827.37hypothetical protein A2Y62_01840 [Candidatus Fisch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04680.1NO06G04680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605358gene_9646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04680.1NO06G04680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04680 ID=NO06G04680|Name=NO06G04680|organism=Nannochloropsis oceanica|type=gene|length=975bp
ATGGAGAAATGCTTCCTAGGCAAATGTTTCTGTTTGCCAGGACGTACCGG
CAGCGGTTGTCAAAACATTCGCACAGCCGATTGGTTGCTTACAGGAGACC
ATTGCCCTGTATTTCATACTTTGAAAGAGGTCCAGGAGAAACCGGTTCAG
GAGTACCCTGTTGAAGCGTGCCACATCGCCGAGAAAGATCCTCTCAGCTG
CGGCATATTTTGTTATTGGCAGGAGGATGCCGGCATCATTCAAGTCCCCA
AATCCAGCTGGGAAAGAGTATCCGACATAGAGTATGCCATCTGGAAGAAT
TTGGAAAAGATGGGACCGGACGACCGAAATCCTGAGCATGCGGAAGGGTT
AGGAGCCTTCGCAGCGCTTCCTTCAGACTTGGGTAATTACCTTGAAATTG
GCGCTGGCCCATACACACAGACCAACAATATTCTTAATGTTCGAAACAAC
GTGCGCATCAAAAATATCTATCTGGCAGAACCCAACATCTTTCGGTACTT
AGCTTTGGATAACTGTATCTACAAAGATAATACCATTCATGGTCAGCGGG
TAAATTTGCTCTCCTTACCGGTGGAAGAGCTGCCTGCTACGGAATTTTTT
GATACAGTTGTGGCTATTAATGTCATCGAACATGTGTTCAGTGCCATCGA
CTTCCTCACGGCCGTGTATAGCGCTTTGAAGCCCGGCGGGATCTTAGTGT
TCGGAGAGCGTTACTTCGATGACCCGGACAAGGACGCGCTGGTGCTGGGC
TCCGCGCTTCTTCATCCCATTCGTGTGAAGCGCGTGTTTTTACAGCATTT
TTTGCGAATGTTTGATACCCTGTACATAGGCGACCATCACACAAGCTTCG
CAAAAGCCAGAGGATTTGAAGAATCTGGTTATTATTTCATAGGTCGCAAG
AAGGAGATCTTCTCGGCGTTTGATGAACCAGGGCAGGCGGAGTTAGACAC
CCGTTTTCCTGCTAATCCATTTTGA
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protein sequence of NO06G04680.1

>NO06G04680.1-protein ID=NO06G04680.1-protein|Name=NO06G04680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MEKCFLGKCFCLPGRTGSGCQNIRTADWLLTGDHCPVFHTLKEVQEKPVQ
EYPVEACHIAEKDPLSCGIFCYWQEDAGIIQVPKSSWERVSDIEYAIWKN
LEKMGPDDRNPEHAEGLGAFAALPSDLGNYLEIGAGPYTQTNNILNVRNN
VRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRVNLLSLPVEELPATEFF
DTVVAINVIEHVFSAIDFLTAVYSALKPGGILVFGERYFDDPDKDALVLG
SALLHPIRVKRVFLQHFLRMFDTLYIGDHHTSFAKARGFEESGYYFIGRK
KEIFSAFDEPGQAELDTRFPANPF*
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Synonyms
Publications