NO06G04640, NO06G04640 (gene) Nannochloropsis oceanica

Overview
NameNO06G04640
Unique NameNO06G04640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length378
Alignment locationchr6:1329663..1330040 +

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Properties
Property NameValue
DescriptionAT hook motif-containing protein, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1329663..1330040 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Homology
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_024636396.1 (uncharacterized protein LOC112420871 [Medicago truncatula])

HSP 1 Score: 100.5 bits (249), Expect = 3.900e-18
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:    8 NSDPIPPSADRLEQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            +SD I  + D +   + E  YP E LNS N  GF  H L LK G+P++LLRN +P  G+ N TRL+I HL  RVIEAKI+TGS+VG  V +P + + +ND     PF+LR+ Q P
Sbjct: 1242 SSDEIDKTTDNI--SDQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVGSKVLIPRIVLTSNDSKW--PFLLRRRQFP 1352
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_024640496.1 (uncharacterized protein LOC112422023 [Medicago truncatula])

HSP 1 Score: 100.5 bits (249), Expect = 3.900e-18
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:    8 NSDPIPPSADRLEQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            +SD I  + D +   + E  YP E LNS N  GF  H L LK G+P++LLRN +P  G+ N TRL+I HL  RVIEAKI+TGS+VG  V +P + + +ND     PF+LR+ Q P
Sbjct: 1235 SSDEIDKTTDNI--SDQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVGSKVLIPRIVLTSNDSKW--PFLLRRRQFP 1345
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_021861913.1 (uncharacterized protein LOC110800896 [Spinacia oleracea])

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-17
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:   20 EQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            E D    AYPTE LNS   PG   H+L+LK G+PV+LLRN +P QGL N TRL+I HL   VIE +I+TGS  G  V +P + M + D    +PFIL++ Q P
Sbjct:  627 ECDTQFNAYPTEYLNSLKLPGLPHHELKLKEGMPVMLLRNINPPQGLCNRTRLMITHLRKFVIEGRIITGSKQGNKVLIPRIVMTSKDSK--LPFILKRRQYP 727
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BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_010451099.1 (PREDICTED: uncharacterized protein LOC104733194 [Camelina sativa])

HSP 1 Score: 96.3 bits (238), Expect = 7.300e-17
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 0 
Query:   15 SADRLEQDENEGA-----YPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            SAD L+ +   G      Y  E LNS   PG   HQ+RLKVG+PV+LLRN +  +GL N TRL++  L  R+IEA+ILTG+HVG+ V +P + +  ND     PF LR+ Q P
Sbjct: 1100 SADSLQTEVAPGGDLSNLYTVEYLNSLEFPGLPNHQIRLKVGVPVMLLRNLNQKKGLCNGTRLIVTRLGLRIIEAEILTGTHVGERVLIPRIVLSPNDTKH--PFTLRRKQFP 1210
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_021722586.1 (uncharacterized protein LOC110690069 [Chenopodium quinoa])

HSP 1 Score: 95.9 bits (237), Expect = 9.500e-17
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:   20 EQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            E D+   AYPTE LNS   PG   H+L+LK G+PV+LLRN +P QGL N TRL+I HL   VIE KI+TGS  G  V +P + M +      +PFIL++ Q P
Sbjct:  202 ECDQQFDAYPTEYLNSLKLPGLPHHELKLKEGMPVMLLRNINPPQGLCNGTRLIITHLGKFVIEGKIITGSKQGNKVLIPRIVMTST--YHKLPFILKRKQYP 302
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: AAK54302.1 (putative helicase [Oryza sativa Japonica Group] >AAP54108.1 AT hook motif-containing protein, putative [Oryza sativa Japonica Group])

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-16
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:   23 ENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            E E  YPTE LNS   PG   HQL+LKVG+PV+LLRN +   GL N TR+ I     RVIEA+I+TG+H+G  V +P + M  N+  +  PF+L + Q P
Sbjct: 1404 EMEMLYPTEFLNSLKHPGIPNHQLKLKVGLPVMLLRNINQNAGLCNGTRMRITRFGKRVIEAEIITGTHIGDMVCIPQIIMSPNE--RKWPFVLNRKQFP 1501
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_021836944.1 (ATP-dependent DNA helicase PIF1-like [Spinacia oleracea])

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-16
Identity = 50/115 (43.48%), Postives = 75/115 (65.22%), Query Frame = 0 
Query:    8 NSDPIPPSADRLEQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            ++D + P  +R   DE+   YPTE LN+   PG   H++RLKVG P+ILLRN + V+GL N TRL+I  L   VIEA+++TG +VG+ V +P + M  ++ T  +PF +++ Q P
Sbjct:  474 SADRVSPLTNRSSVDED--LYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGRRVSIPRVEMTPSNHT--LPFTMKRRQFP 584
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: AAV44035.1 (putative helicase [Oryza sativa Japonica Group])

HSP 1 Score: 95.1 bits (235), Expect = 1.600e-16
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:   23 ENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            E +  YPTE LNS N PG   H L+LKVG+PV+LLRN +   GL N TR+ I  L  R IEA+I+TG+HVG+ V +P + M   +   G PF+L++ Q P
Sbjct: 1466 ETDVLYPTEFLNSLNFPGMPNHVLKLKVGLPVMLLRNINQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTE--SGWPFLLKRRQYP 1563
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: XP_021854440.1 (uncharacterized protein LOC110793821 [Spinacia oleracea])

HSP 1 Score: 94.4 bits (233), Expect = 2.800e-16
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 0 
Query:   15 SADRL-----EQDENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            SADR+         +E  YPTE LN+   PG   H++RLKVG P+IL RN    +GL N TRL++  L  RVI+AK++TG++VG+ V +P + +   D T  +PF L++ Q P
Sbjct:   79 SADRICPFTNTSTNDEVLYPTEFLNTLQFPGIPNHEIRLKVGCPIILTRNISQSEGLCNGTRLIVSRLDTRVIQAKVVTGTNVGEQVAIPRVEVSPTDST--LPFTLKRRQFP 189
[Close]
BLAST of NO06G04640 vs. NCBI_GenBank
Match: AAU44208.1 (unknown protein [Oryza sativa Japonica Group])

HSP 1 Score: 94.0 bits (232), Expect = 3.600e-16
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:   23 ENEGAYPTELLNSKNPPGFALHQLRLKVGIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPSMNMDTNDDTQGVPFILRQCQVP 123
            E +  YPTE LNS N PG   H L+LK+G+PV+LLRN +   GL N TR+ I  L  R IEA+I+TG+HVG+ V +P + M   +   G PF+L++ Q P
Sbjct: 1357 ETDVLYPTEFLNSLNFPGMPNHVLKLKLGLPVMLLRNINQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTE--SGWPFLLKRRQYP 1454
The following BLAST results are available for this feature:
BLAST of NO06G04640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024636396.13.900e-1847.83uncharacterized protein LOC112420871 [Medicago tru... [more]
XP_024640496.13.900e-1847.83uncharacterized protein LOC112422023 [Medicago tru... [more]
XP_021861913.12.500e-1750.49uncharacterized protein LOC110800896 [Spinacia ole... [more]
XP_010451099.17.300e-1746.90PREDICTED: uncharacterized protein LOC104733194 [C... [more]
XP_021722586.19.500e-1750.49uncharacterized protein LOC110690069 [Chenopodium ... [more]
AAK54302.11.200e-1649.00putative helicase [Oryza sativa Japonica Group] >A... [more]
XP_021836944.11.200e-1643.48ATP-dependent DNA helicase PIF1-like [Spinacia ole... [more]
AAV44035.11.600e-1649.00putative helicase [Oryza sativa Japonica Group][more]
XP_021854440.12.800e-1643.36uncharacterized protein LOC110793821 [Spinacia ole... [more]
AAU44208.13.600e-1648.00unknown protein [Oryza sativa Japonica Group][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04640.1NO06G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04640.1NO06G04640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04640 ID=NO06G04640|Name=NO06G04640|organism=Nannochloropsis oceanica|type=gene|length=378bp
ATGCATCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA
CAGGCTGGAGCAGGACGAGAACGAGGGTGCTTACCCCACGGAGCTCTTAA
ACTCCAAGAACCCGCCCGGCTTCGCCCTGCACCAACTACGGCTAAAAGTG
GGCATACCTGTCATCCTGTTGCGGAACGCAGACCCGGTTCAAGGCCTTGC
AAATGAGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG
CCAAAATTCTGACGGGGAGCCATGTGGGTCAATTTGTCCGCCTTCCCAGC
ATGAACATGGACACCAACGACGACACCCAGGGTGTACCTTTCATCCTCCG
CCAATGTCAGGTCCCCGGGTTTTCCTGA
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protein sequence of NO06G04640.1

>NO06G04640.1-protein ID=NO06G04640.1-protein|Name=NO06G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MHPPPELNSDPIPPSADRLEQDENEGAYPTELLNSKNPPGFALHQLRLKV
GIPVILLRNADPVQGLANETRLLILHLSPRVIEAKILTGSHVGQFVRLPS
MNMDTNDDTQGVPFILRQCQVPGFS*
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Synonyms
Publications