NO06G04490, NO06G04490 (gene) Nannochloropsis oceanica

Overview
NameNO06G04490
Unique NameNO06G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length943
Alignment locationchr6:1263489..1264431 -

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Properties
Property NameValue
DescriptionTransmembrane protein 97
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1263489..1264431 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033118EXPERA
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO06G04490 vs. NCBI_GenBank
Match: EWM26434.1 (transmembrane protein 97 [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 3.600e-66
Identity = 125/200 (62.50%), Postives = 153/200 (76.50%), Query Frame = 0
Query:   65 GGMSPLLRRVFFLYFATHIPITLLIDAQGVSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYLLVPLLLVWVMWMHERPFGIEGEVPMGHPKGGDASKCPFASMIGFAAAEGVSVAPLEGGKGGKKER 265
            GGM   +R +FF YF THIPITL IDAQ + S +HP A  +LL WYT+ +GDFLM +PP WF+++VACEL+ QLPFFFVA  GFW  +N +RLPC+VYG+HVATTLVPILDAFA A HL+ ++K  LIGIY PYLLVP++LV +MW +ERPFG+   +P GHPKGGD SKCPFASM+G  AAEG+   P +     KKER
Sbjct:    6 GGMPAFIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGM--GLPRGHPKGGDVSKCPFASMMGLTAAEGLE-GPAQDDAVRKKER 202          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_002958154.1 (hypothetical protein VOLCADRAFT_108000 [Volvox carteri f. nagariensis] >EFJ40779.1 hypothetical protein VOLCADRAFT_108000 [Volvox carteri f. nagariensis])

HSP 1 Score: 152.9 bits (385), Expect = 1.400e-33
Identity = 77/155 (49.68%), Postives = 105/155 (67.74%), Query Frame = 0
Query:   64 IGGMSPLLRRVFFLYFATHIPITLLIDAQGVSSA-FHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYLLVPLLLVWVMWMHERPFG 218
            +G ++ +L R+F  YF  HIP T+++D+Q V  A + P   K+LL W+ K  GD L+ S P WF S+VACE+L QLPFFFVA   F   +N +R+PC+VYG+HVATT+VPIL  F  +    P ++  L+ IY PYL+VP+LLV  M + ERPFG
Sbjct:    1 MGLLTSVLDRIFLAYFILHIPTTVIVDSQSVVPAQYFPSWAKELLQWHIKTNGDHLVSSNPLWFVSLVACEILLQLPFFFVASYAFLKRRNWIRIPCIVYGSHVATTMVPILSEFLFSPEAGP-KRLTLVSIYLPYLVVPVLLVVRMAVVERPFG 154          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_013756112.1 (transmembrane protein 97 [Thecamonas trahens ATCC 50062] >KNC51450.1 transmembrane protein 97 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 151.0 bits (380), Expect = 5.200e-33
Identity = 85/164 (51.83%), Postives = 103/164 (62.80%), Query Frame = 0
Query:   71 LRRVFFLYFATHIPITLLIDAQ--GVSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNSMRLPCLVYGAHVATTLVPILDAFAHASH--------LTPEQKAILIGIYFPYLLVPLLLVWVMWMHERPFGIEGEVPM 225
            L  VF +YFA HIP T LIDAQ   V +   P   K+LLA++ + F D L+  PP+WF S+V CE L QLPFFFVAV  F   +N +R+P ++YGAHVATTLVPIL   A+A          LTPE +A LI IY PYLLVP+ LV  M   E PFG  G+  M
Sbjct:    4 LDAVFLVYFAVHIPTTALIDAQCLPVVAELVPGFAKELLAYHVETFHDPLVADPPRWFVSLVVCEALLQLPFFFVAVYAFVAKRNWIRIPAIIYGAHVATTLVPILAEIAYAEPKADSPGGVLTPELRATLIAIYIPYLLVPITLVVRMACAEHPFGEPGKAKM 167          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_020666374.1 (transmembrane protein 97 [Pogona vitticeps] >XP_020666375.1 transmembrane protein 97 [Pogona vitticeps])

HSP 1 Score: 146.7 bits (369), Expect = 9.900e-32
Identity = 75/149 (50.34%), Postives = 93/149 (62.42%), Query Frame = 0
Query:   70 LLRRVFFLYFATHIPITLLIDAQGVSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNS-MRLPCLVYGAHVATTLVPIL-----DAFAHASHLTPE---QKAILIGIYFPYLLVPLLLVWVM 210
            +L  VF LYF THIPITLLID Q +   F+P+   + L WYT  F D LM  PP WFRS + CE   QLPFF VA   FW GK   +R P ++Y  HVATTL+PIL       F+H  H  PE   ++  L+ IYFPYLL+PLL+++ M
Sbjct:   29 VLEWVFALYFLTHIPITLLIDLQALVPDFYPRGLTEWLTWYTAAFKDPLMADPPSWFRSFIYCEAFLQLPFFPVATYAFWKGKRKWIRTPAIIYATHVATTLMPILAHILFHDFSHGKHAGPETLPERLTLLAIYFPYLLIPLLILFSM 177          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_015277418.1 (PREDICTED: transmembrane protein 97 [Gekko japonicus])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 0
Query:   71 LRRVFFLYFATHIPITLLIDAQGVSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGK-NSMRLPCLVYGAHVATTLVPILDAFAH--------ASHLTPEQKAILIGIYFPYLLVPLLLVWVMWMH 213
            L R+F LYF +HIP+TLL+DAQ VSS FHP+A  DLL WYT  F D LM   P WF+S V CE+  QLPFF VA   FW G    +R P +VY  HVATTLVP+L  F          A   T  ++  L+ +Y PYLL+PLLL+  M +H
Sbjct:    9 LERLFALYFLSHIPVTLLLDAQAVSSRFHPRALTDLLKWYTTSFKDPLMAQCPAWFQSFVYCEVFLQLPFFPVAAYAFWKGNCKWIRTPAIVYATHVATTLVPLLAHFLFHDFPDSKPAGPQTWHERLWLLAVYSPYLLIPLLLLVTMLLH 159          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_014151104.1 (hypothetical protein SARC_10331 [Sphaeroforma arctica JP610] >KNC77202.1 hypothetical protein SARC_10331 [Sphaeroforma arctica JP610])

HSP 1 Score: 140.6 bits (353), Expect = 7.100e-30
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 0
Query:   78 YFATHIPITLLIDAQG-VSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYLLVPLLLVWVMWMHERPF 217
            YFA+HIPITLL+D+Q  V   + P    ++ +WY K F D LM SPP WF+S +ACEL+FQ+P FF+AV G+W+  N +R P +VYGAHV TTLVP+L        +   QK +L   Y PYL++P L+   M+M   PF
Sbjct:   14 YFASHIPITLLMDSQAIVPPVWIPDFAVEMNSWYIKTFNDPLMASPPIWFQSFIACELIFQIPIFFLAVYGYWNRCNWIRDPLMVYGAHVTTTLVPVLYELYRNDQVEDGQKLVLAAFYIPYLIIPFLITLRMFMCTVPF 153          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_013091071.1 (PREDICTED: transmembrane protein 97-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 136.3 bits (342), Expect = 1.300e-28
Identity = 71/151 (47.02%), Postives = 100/151 (66.23%), Query Frame = 0
Query:   67 MSPLLRRVFFLYFATHIPITLLIDAQG-VSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNS---MRLPCLVYGAHVATTLVPI-----LDAFAHASHLTPE---QKAILIGIYFPYLLVPLLL 206
            M+ LL  VFF+YF THIPI+LL+D Q  + S ++PQ   DL  WY +E+ D +M SPP WF+S++ CE++ Q PFFF  V GF+ G      +R PC+VYG HVATTLVPI     L+ F+ A+  +P    ++  L+G Y PYL++P+L+
Sbjct:    1 MARLLDFVFFVYFLTHIPISLLVDFQALLPSEYYPQQLIDLKTWYCREYRDSMMASPPSWFKSLIICEVI-QFPFFFFGVYGFFKGAKQCRWLRWPCVVYGVHVATTLVPIIGYVLLEDFSKATLPSPRNMTERLTLLGFYSPYLVIPILI 150          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: PNH02925.1 (Transmembrane protein 97 [Tetrabaena socialis])

HSP 1 Score: 136.3 bits (342), Expect = 1.300e-28
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query:   66 GMSPLLRRVFFLYFATHIPITLLIDAQGVSSA-FHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYLLVPLLLVWVMWMHERPF 217
            G+  +L  VF  YF  HIP T+++D+Q +  A + P   K+LL W+ K   D L+ + P WF S+V CE L QLPFFFV   GF    N +R+PC++YG HVATT+VPIL          P ++  L  IYFPYLLVPLLLV  M + ++PF
Sbjct:    2 GLLGVLDAVFLAYFIIHIPTTIIVDSQSIVPAQYFPVWAKELLQWHIKTNEDHLVSTNPVWFVSLVTCETLLQLPFFFVVAYGFIRRANWIRVPCIIYGTHVATTMVPILADILFGPDSGP-KRLTLFWIYFPYLLVPLLLVLRMALVDKPF 152          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_012679539.1 (PREDICTED: transmembrane protein 97 [Clupea harengus])

HSP 1 Score: 135.6 bits (340), Expect = 2.300e-28
Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 0
Query:   70 LLRRVFFLYFATHIPITLLIDAQG-VSSAFHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGK-NSMRLPCLVYGAHVATTLVPILD-----AFAHASHLTPE---QKAILIGIYFPYLLVPLLLVWVM 210
            +L  ++FLYFA+HIPITL ID Q  +    +PQA K L+ WY  EF D +M  PP WF+S + CE L QLPFF VA   FW G    +R P +VY  HVATTLVPIL       F  A H  P+   ++  L+ IY PYL+VP++L++ M
Sbjct:    5 ILEIIYFLYFASHIPITLFIDFQALLPEHVYPQALKQLMRWYAAEFKDPMMLDPPVWFKSFILCEALVQLPFFPVAAYAFWKGGCKWIRTPAIVYSTHVATTLVPILSYVLLHQFPQAPHPGPQTMRERLTLVSIYAPYLIVPIMLLFTM 154          
BLAST of NO06G04490 vs. NCBI_GenBank
Match: XP_024113863.1 (sigma intracellular receptor 2 [Oryzias melastigma])

HSP 1 Score: 134.8 bits (338), Expect = 3.900e-28
Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 0
Query:   70 LLRRVFFLYFATHIPITLLIDAQGVSSA-FHPQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWHGK-NSMRLPCLVYGAHVATTLVPILDAF--------AHASHLTPEQKAILIGIYFPYLLVPLLLVWVM 210
            +L  +FFLYF++HIPITL ID Q +  A  +PQ  KDLL WY +EF D +M  PP+WFRS V CE L Q+PFF +A   F  G    +R P +VY  HVATTL+PIL            H    +P ++ +L+ IY PYLLVP+LL+  M
Sbjct:    5 VLELLFFLYFSSHIPITLFIDLQALLPAHLYPQQLKDLLRWYAEEFRDPMMLDPPEWFRSFVFCEALVQMPFFPIAAYAFLKGGCKWIRTPAIVYSTHVATTLLPILSHILFHQFPQTPHPGPQSPRERWLLVSIYAPYLLVPVLLLLTM 154          
The following BLAST results are available for this feature:
BLAST of NO06G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26434.13.600e-6662.50transmembrane protein 97 [Nannochloropsis gaditana... [more]
XP_002958154.11.400e-3349.68hypothetical protein VOLCADRAFT_108000 [Volvox car... [more]
XP_013756112.15.200e-3351.83transmembrane protein 97 [Thecamonas trahens ATCC ... [more]
XP_020666374.19.900e-3250.34transmembrane protein 97 [Pogona vitticeps] >XP_02... [more]
XP_015277418.11.300e-3150.99PREDICTED: transmembrane protein 97 [Gekko japonic... [more]
XP_014151104.17.100e-3048.57hypothetical protein SARC_10331 [Sphaeroforma arct... [more]
XP_013091071.11.300e-2847.02PREDICTED: transmembrane protein 97-like isoform X... [more]
PNH02925.11.300e-2846.71Transmembrane protein 97 [Tetrabaena socialis][more]
XP_012679539.12.300e-2848.00PREDICTED: transmembrane protein 97 [Clupea hareng... [more]
XP_024113863.13.900e-2848.00sigma intracellular receptor 2 [Oryzias melastigma... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000025NSK000025Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04490.1NO06G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100395g2gene4091Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04490.1NO06G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04490 ID=NO06G04490|Name=NO06G04490|organism=Nannochloropsis oceanica|type=gene|length=943bp
ATGTCATTTCCGGCTCCGTTGTTGCAACAGAAGCAGAAATTCGGTGACAT
GGGATTTGGGCTGAAGAAAGCGAGTTGGGCCGGAAGTCTAAGCCAAATGC
CCCCATCACCCCAGCTCATCAGCCTTCATAAGCTCCAACAGGTgtaggtc
catcaccgccccctgcaatcccgatttctcccgtaatgcaacgcagtata
cggtgatgttaccatcgcccaatccgttgccccaaggtgttcctcctttg
gctgttctcatacgcctacgccccacccttacgaaccacagGAGCATGGC
TGCCCCTAGCAACACCAGCAGCAGTAGCACCGCAGTCATCGGCGGCATGT
CGCCCTTATTGAGGAGGGTTTTCTTCTTGTACTTTGCCACGCACATCCCC
ATCACCCTTCTTATCGATGCGCAAGGAGTATCCTCCGCCTTCCACCCCCA
AGCCTGCAAGGACCTGCTCGCCTGGTACACCAAGGAGTTCGGAGACTTCC
TCATGGATAGCCCTCCCCAGTGGTTTCGGTCCATCGTGGCTTGCGAACTG
CTCTTCCAACTGCCCTTCTTCTTTGTCGCGGTCAACGGCTTCTGGCACGG
CAAGAACTCCATGCGTCTCCCGTGCTTGGTGTACGGTGCCCACGTCGCCA
CCACCCTCGTTCCCATCTTGGACGCCTTTGCCCACGCTTCGCACCTCACG
CCGGAGCAAAAAGCCATATTGATTGGCATCTATTTCCCCTACTTGCTCGT
CCCGCTGCTATTGGTGTGGGTCATGTGGATGCACGAGAGGCCATTTGGAA
TCGAGGGTGAGGTGCCAATGGGGCACCCAAAGGGCGGGGATGCCTCCAAG
TGCCCTTTTGCCAGCATGATAGGATTTGCGGCGGCGGAAGGCGTGTCGGT
GGCGCCGTTGGAAGGGGGGAAGGGGGGAAAGAAGGAGAGATAA
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protein sequence of NO06G04490.1

>NO06G04490.1-protein ID=NO06G04490.1-protein|Name=NO06G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSFPAPLLQQKQKFGDMGFGLKKASWAGSLSQMPPSPQLISLHKLQQVSM
AAPSNTSSSSTAVIGGMSPLLRRVFFLYFATHIPITLLIDAQGVSSAFHP
QACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFWH
GKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYLL
VPLLLVWVMWMHERPFGIEGEVPMGHPKGGDASKCPFASMIGFAAAEGVS
VAPLEGGKGGKKER*
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Synonyms
Publications