NO06G04390, NO06G04390 (gene) Nannochloropsis oceanica

Overview
NameNO06G04390
Unique NameNO06G04390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1294
Alignment locationchr6:1229944..1231237 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1229944..1231237 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000016NSK000016Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04390.1NO06G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04390.1NO06G04390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04390 ID=NO06G04390|Name=NO06G04390|organism=Nannochloropsis oceanica|type=gene|length=1294bp
CACAGGGACATGGCAACCTTGCCATCGTCTGCATCTTCTCCTTCCTCATC
GGCAACCGCAACAACAACAACAACAACAGCAGCAGGAGCAGCAGAAACCT
CCCACCCCCAACCCTCCTCCACATCTACCTCTCACCACAACGCCCAAGAT
AGAAAGGTCGCAACGGTGGGGGTCCAGGCCACCTTCTATGTCCAAGCCCC
TCACGCCAACCAGCCTATCGAAACACACGCTTTTAGCTGCCTCATGCCCT
CGTCGCAAATCGCACCATGTgtacgtttccgtgtgtcgtacttcccttgc
tcgacctcctttccctttcctgccttgttgcgtattcatgctgcttcatc
catctgacaccggaacaaagtactgcaacctgcaggggaaattaatgcaa
gacagaccaccagcttggtttctccatcccccccgcaaaattccattgcc
tcccaacacccgctttggccggaaaccactcttcccttcggctcctcctt
gtcctcgtcctcaacctccctacaacttcccacagtacccaccacacacc
tcaccacatacccttccatctcttcacccccacaccatcccaacagACCA
CTGCCTTGCCGCTCAAAGACGCGGACGTCCCTGCCTACGAGCCTGGGAGC
TCGACCTACTCCGGCCGTCACGATGGCGGCTTACTCCCCCCCCTCAGACA
GGGAGGGGTATGGGGGGCAATGATACAGGCAGTAGCAGGGGCGAAGGCAG
ACAGCGATGAGTTTTTGACGGGGGTGATTGGCGGAGAGCGGGGAAGGGAG
GAGGAGCAGGAAGAGGGGATGGATGTGGTGGAGGGTGAGGAGGAAGAGGA
AGAAGAGGAAGAGGTGAAAGATGGAGGAGATATGGACACGTTACCGCAAT
CTTTGCCAAAGGAGGAGAAAGACAAGGCGAAGAAAGATGAATCCGTGAGT
GCCGGGCGGAGAGAAAGCAAGAGGGGCGGGGGGGGACCAAGAAGCCCAAA
ATATGAGCACAATGCAGTCGATCGACGACAAGAAGCAATGAGAAGAAGAG
GAGCTGTGAGGATCCATGTGATTACGACTCAATATATGCTTATATTAGGC
TACTATCTACTGTATTGTATGTATATCTTCCTCATAGAGCGAGAGGGAGA
TTCGCGGCATTTTACAAAAAGTGGAGATATAGTATCGCTGGCCGCCTAGA
CCGGAGTTCATTGTTACTTCTCTTTTTACCCATATTTCACTCATCTACTT
ACAAGCACCACAACCTTTCTAGAAACCTACTTATTTTTTCTCTT
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protein sequence of NO06G04390.1

>NO06G04390.1-protein ID=NO06G04390.1-protein|Name=NO06G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MATLPSSASSPSSSATATTTTTTAAGAAETSHPQPSSTSTSHHNAQDRKV
ATVGVQATFYVQAPHANQPIETHAFSCLMPSSQIAPCTTALPLKDADVPA
YEPGSSTYSGRHDGGLLPPLRQGGVWGAMIQAVAGAKADSDEFLTGVIGG
ERGREEEQEEGMDVVEGEEEEEEEEEVKDGGDMDTLPQSLPKEEKDKAKK
DESVSAGRRESKRGGGGPRSPKYEHNAVDRRQEAMRRRGAVRIHVITTQY
MLILGYYLLYCMYIFLIEREGDSRHFTKSGDIVSLAA*
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Synonyms
Publications