NO06G04340, NO06G04340 (gene) Nannochloropsis oceanica

Overview
NameNO06G04340
Unique NameNO06G04340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4187
Alignment locationchr6:1217103..1221289 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1217103..1221289 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO06G04340 vs. NCBI_GenBank
Match: XP_005854767.1 (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >XP_005855415.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >EKU20946.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >EKU21594.1 hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 463.8 bits (1192), Expect = 1.100e-126
Identity = 217/295 (73.56%), Postives = 253/295 (85.76%), Query Frame = 0 
Query:   48 HLARCPSLLHPSALVKVDPMWPCYACRASRTKCTGGFPCSRCARLSVCCLPNNWRREEPILEYVLTVHSPKPFAEMYTVAFERLFLAGKIRRHSALRILKMWDFLSCLAEADVTLGVAEHIRRRFDISPTELEEPMRMLEDPPPHVRMQRLRQYQGSEAKRARTQQLKELEVFKRADAGSDVTNTSVLMFVTTESTMWAACNDIHANRLKEATELWDKALQRKLTWAYLMAPIYAPEDRQTYFESLVEMTFGHTVMTKTEIFKMYDIDGTTKLCLNTAKSMLLGPNRMGLIFKVE 343
            HLARCPS L PSAL K+DPMWPCYACRASRTKC+GGFPC+RC+RLSVCCLPNNW+REEPILEYVLT HSPKPFAEMY  AFERLF+AGKIRR SALR LKMW+FLS LA ADVTLGVA H+++RF++S  ELEEPMRML+DPP HVR QRL+QYQ S A +ARTQQLKE E+FKR + G+  +  S+LMFVT  STMWAACN+ HA RLKEATELWDKALQRKL W+YLMAP+YAPEDR+TY +++VEM FGH  +TKT  FKMYD DG+ KLCL+TA+++ LGP+  G+ FK+E
Sbjct:   32 HLARCPSQLTPSALSKLDPMWPCYACRASRTKCSGGFPCARCSRLSVCCLPNNWKREEPILEYVLTTHSPKPFAEMYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADVTLGVASHVQKRFNVSAIELEEPMRMLQDPPSHVRYQRLQQYQSSAASQARTQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLTKTMFFKMYDKDGSVKLCLHTARTIRLGPHTTGITFKIE 326
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BLAST of NO06G04340 vs. NCBI_GenBank
Match: EWM20744.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 7.100e-22
Identity = 85/309 (27.51%), Postives = 127/309 (41.10%), Query Frame = 0 
Query:   70 CYACRASRTKCTGGFPCSRCARLSVCCLP----NNWRR-------------EEPILEYVLTVHSPKPFAEMYTVAFERLFLAGKIRRHSALRILKMWDFLSCL--AEADVTLGVAEHIRRRFDISPTELEEPMRMLEDPPPHVRMQRLRQYQGSEAKRARTQQLKELEVFKRADAGSDVTNTSVLMFVTTESTMWAACNDIHANRLKEATELWDKALQRKLTWAYLMAPIYAPEDRQTYFESLVEMTFGHTVMTKTEIFKMYDIDGTTKLCLNTAKSMLLGPNRMGLIFKVEIAPPSRHLTLATGSSRV 360
            C  C   +  C   FPC RC R +  C P       RR               P L+ V+          +Y  AF+ LF  G + R  A+ +LK W  L  +   + D T G    ++  F I+  ELE+P  +  +PP H    RL   +         + L+E  V ++A+  S     +V M        W   N  H    +   E      +R+   A+L A   APEDR  YF+ L   T   ++M +T   K++D  G   L L+  + + +GPN    +   E APPSRH+T     +R+
Sbjct:  118 CRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSS----RAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRL 422
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BLAST of NO06G04340 vs. NCBI_GenBank
Match: XP_005855698.1 (hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526] >EKU20665.1 hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.2 bits (178), Expect = 4.000e-9
Identity = 60/247 (24.29%), Postives = 100/247 (40.49%), Query Frame = 0 
Query:  106 PILEYVLTVHSPKPFAEMYTVAFERLFLAGKIRRHSALRILKMWDFLSCL--AEADVTLGVAEHIRRRFDISPTELEEPMRMLEDPPPHVRMQRLRQYQGSEAKRARTQQLKELEVFKRADAGSDVTNTSVLMFVTTESTMWAACNDIHANRLKEATELWDKALQRKLTWAYLMAPIYAPEDRQTYFESLVEMTFGHTVMTKTEIFKMYDIDGTTKLCLNTAKSMLLGPNRMGLIFKVEIAPPSRHL 351
            P L+ ++ +   +    +Y  AF  L   G + R   + +LK W  +        D T G+   ++  F I+  EL  P  +L+        +RL     S A R   +  K   +FK+ + GS     ++ M            ND++    +   E    A  R+    +L+A    P+DR ++F  LV+   G+    +T +FK  D      L L   + + L P     +   E APPSRH+
Sbjct:  124 PSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWM---SHANRLGGEGAKSDAIFKQLNDGS----RAIRMECLGGKERRLVVNDVYLTYFRRPEEFMKDAWARRCLIGFLLAATVVPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHI 363
The following BLAST results are available for this feature:
BLAST of NO06G04340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854767.11.100e-12673.56hypothetical protein NGA_0115602 [Nannochloropsis ... [more]
EWM20744.17.100e-2227.51Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
XP_005855698.14.000e-924.29hypothetical protein NGA_0645100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000011NSK000011Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04340.1NO06G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04340.2NO06G04340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673851gene_9609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04340.1NO06G04340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04340.2NO06G04340.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04340 ID=NO06G04340|Name=NO06G04340|organism=Nannochloropsis oceanica|type=gene|length=4187bp
TCGCGGTCAGTCAACTTCGTGGGATAATCATTCTTGTCGAGTGACAAATA
AAATGGGTTGTTCTTGGCTTGTGCGAGGTTGAAACTACACAGGGAAAAGA
GTCTTCCAGCCTTTGCTCACAGCTTATATCTTGGTAGCCGATATTAAGCA
ACCTTTTGGCACATCTGAATAATATGTGCGACAAGTGCATCAAAAATGTT
GATTCGGAGAGATTGGAATCTGTACGGCACGTAAGGACTTGCTATGAGCC
ATCATATCACGGCCAATACTGCGCATCGCAGCAACTCGAAGAGTTTACAG
TTCAGAGTACAGTGTGTTTAAGTCATCGTGTGTTGTGCGCTCTTCATGAC
TGGCCCCCGTACCAGGCGTGAAAACCAAAGCACGGAACGTGCCTGCCTCG
AAACAAAATTGGGAAGTGGAGGCCGGCGGGGAGTCTTCCAGTTCCGAATG
ACCAGATCCGTGGCCCCTTGGATCCGACATTCCCGTCGGCCGGGCACCGC
CAGCCAGCACGTGGGTCCACACTGCTACCAAATCTAGCGAGTATCGGACA
GAGTCCGTCCCCACGTTACAACATTCACATTCCCCCCGCTAGACGTCGAT
GGCCATGGTCATGTACGGTGATGATATGTAGGGATACTTCGATACTCTCG
AGGCGTATCAGTCCGTGTTGGTTCCCCGAAAAATACCAATTCGGCTCACG
TTGGGTGAGACTGCACCCCGTTCTAACAACACCTTCCGATACCAGGGCAC
ACACCAGTCCGCGCAGGCGCTTTTCTCCTCTCTCCACGCCGTATTTCCGG
CACCTGGGGTAGCCCTGCACGGCCCGGCGTGCCACTGGTGTGGCCTTCTG
TCAAGCAACCTGTCGGCGTGCGGCGTGCGGGGAATTTTGCCGAGCCAATG
GATAGAGCAAGCAGCAGCAGCACCAGCACGGTCATGGGTAAGTCCAAGCA
CCGGGCACGAAAAGCTAGCAGCCACATGAGAACAAAGTACGTCGCCTCCA
CCTCTACCACGACAAGCAAGACTTCTTCCTCGGGGTCACATCTCGCGCGT
TGCCCTTCACTTCTTCACCCGTCTGCCCTTGTCAAAGTTGATCCGATGTG
GCCTTGCTATGCCTGCCGCGCCTCTCGGACAAAATGTACGTTAATTGGCG
ACCTGGATGTGGGTGCTCGTATCCCAATATAGTTAAAGGGACCGTTGACT
AAGGCTGCATCTCCTTGAGGCCGGATGGGAAAATAAAACGCGGCTCTTTC
CCCTCGACGTACTGGTCAGATTTCCAAGCCCTACCTATCCCTCCAACTTA
TAACAGTCACGTATAAATCTACAATCTGCATATGTCATCATTTATGCCAC
AGGTACTGGAGGTTTCCCATGCTCCCGCTGCGCCCGCTTATCCGTCTGTT
GCCTCCCAAATAACTGGCGGAGGGAGGAGCCCATCCTAGAATATGTTCTC
ACAGTCCACAGCCCCAAGgtaaagaatgtggttgcgcatgaaagagggaa
agtatggaagctaagtaattaaaaaccttctcaatccactagCCTTTTGC
CGAGATGTACACGGTGGCCTTCGAGCGCCTCTTCCTGGCAGGCAAGATCC
GTCGACACAGCGCCCTCCGAATCCTCAAGATGTGGGACTTCCTCTCCTGT
CTCGCCGAGGCGGACGTGACGCTGGGCGTGGCCGAGCACATTAGACGGCG
CTTCGACATCTCCCCCACCGAGCTGGAGGAGCCCATGCGCATGCTTGAGG
ACCCTCCGCCCCACGTCCGgtacgtacctcgtcctctactccctcccttt
accactatattgcgtttgtgccgcacaagtctcttaacaagctgtataat
ctgccacataagctgccacataagagcaaggtgcatcagcaagggatgac
cgaaagagcaagcccttgcacctgcgcggtcttccttttcccctctctta
aacccccccacccacccacccccctttacccccgccccaacggcccacac
agCATGCAGCGCCTGCGTCAGTACCAAGGCAGCGAGGCCAAACGGGCCCG
CACGCAGCAGCTGAAAGAGCTGGAGGTGTTCAAAAGGGCGGATGCGGGCT
CGGACGTGACGAATACTTCGGTGCTGATGTTTGTCACCACCGAGTCCACG
ATGTGGGCAGCGTGCAATGACATCCACGCAAATAGGCTTAAGGAGGCCAC
CGAGCTGTGGGACAAGGCGCTGCAACGAAAGCTGACCTGGGCCTACCTGA
TGGCGCCAATCTACGCGCCCGAGGATCGGCAGACCTACTTCGAGAGCCTG
GTGGAGATGACGTTCGGGCACACTGTCATGACGAAGACCGAGATCTTCAA
GATGTATGACATCGACGGAACCACTAAGCTCTGTCTCAACACCGCCAAGA
GTATGCTCCTGGGCCCGAACCGTATGGGCCTCATCTTCAAGGTGGAGAgt
aagtgcggggacagacgacgaggcaggcgacgagggaaggggggaaaggg
tgtatctcgcgtgtcgctcacttcctcctgccttctcaaacgttgttttt
gtccattcgcctcgaatcgcaccgccctagtcctgtcccatccaatccac
gctgactgctctctttctcttcttttttatcctctttctctctatccctc
cttttctatctccccaagTCGCACCCCCTTCTAGACACTTAACCCTGGCA
ACGGGCTCCAGCCGCGTGGCGGGCCGCGTGCGGTCGACGTGGGCGAAAGA
TCGAAACCAGAAAATGGTGTGGGAGGGAATATTCTGCAAGGGCGAGGAGG
GTATGGGCAGGGGGAAGGACAGGTCGGTCTCCCGCTGGGAGAATAACGTC
ACGGGCTGGTCGGAGCCGGGGGTCGGCCGTGTGGGCAGCAGCAGCAGAAA
CAACAGCAACAACAGCGGCAGCATCCAGTTTCGTCTGCCGGGCATTGCCA
CAGTGCCATTCGCTGGGGCTGCTTCGATCCATCCTCCCCTTCCCTTGGAT
TCACACCTGGATGCGACAGAGGGGCAGGCATCACGAGGGAGGGAGGAGGG
AGAGGCAGCACCGGCTGGCAACCTGACGCCCAATCCCCCCCGCTCATGTC
CGAACTCATTCCTCGTCCGCGCGGCGGCCATGCCAGCAGCGGAGCTGGAG
GCTATCTTTTCGCAGAGGAATATCGTGATGAGGAAGGCGGGGCATTGGGA
ACGGGCGTACACGACGAAGAGGGTGCTGGAGAAAGGGAGACGGAAGACAG
CATCGCCACCACCGACACCATCACCACCAACAACAACAACACCAAGGGAG
CAGGGTTTACAGGGGCAAAATCAGCCGCTACACCAACGGCATGAGGAGCG
AGATGCAGTATCTGTCACCTCAGCCGACCTTTCGCTTTCAGCGCTTCTTT
CCAATGACGGCATGCTCCTGTGCGATGTATTCGCGCCAGAAGGAAGTGAT
GGAAGGGGTGTAGGGGAAAGGGAGGAAGAAGGAGGCAAGGAGAATGGAAA
AGAAGAGGTCAAGGAGACCGTCATGAAAGCGTACGGGCAGGAGAATCTCG
CCCCACTACCGACGCCCGGGAATGTGGCCCACATGAATTGTCTGATGAGA
GAGGTTCCGCTCCAGCACTTCCTGTGGCCGCAGTCGCAGCAGCTCGAATA
TCATGACCACGCGTGCCAGCCCACAGCTTCTGTTTTTCCTCCGAGAGAAA
GCGGGGATGAGGGGAGAGACGGAGAAGGAGGGTGTATCGGTTACGTTGCC
CACTCACCCTCCTCTCTCCCGGTGCTCTCACCCGCATTTCGGGAGCAGAT
TCCACAGGAATTGTTGGCGAAGGGAGAGGGGGGTGAATGTGGGGATGACG
CGGTGCAGAGAAGCCCAGGAGTCGGGGGAGGAGTGTCGTTCATGGAAAAT
GAGAAGGAGGTAATGTATTTGTTCAAGGATGGAGACCTTGATAGCTGGTA
AGAGGAAAGAATCGTGTTGAGAAGGGGAGGACTGGCGAAAGTCAACAGGG
CGACAGAATCGATATAACTCGCAGGCGCAAGCTGTACGAGTGGATTCGTC
GGTGCATGCTACCTACCCTCTACTTCGCTTAGGGAATTTCAAATTAGAAA
TAGCTATATCAAGAAACCAGCATGATAAGATGTAAGAATAATGAGGGCTA
TTACAGGAAACGGAACGAAAAGAATATATAGATCTAC
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protein sequence of NO06G04340.1

>NO06G04340.1-protein ID=NO06G04340.1-protein|Name=NO06G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=770bp
MDRASSSSTSTVMGKSKHRARKASSHMRTKYVASTSTTTSKTSSSGSHLA
RCPSLLHPSALVKVDPMWPCYACRASRTKCTGGFPCSRCARLSVCCLPNN
WRREEPILEYVLTVHSPKPFAEMYTVAFERLFLAGKIRRHSALRILKMWD
FLSCLAEADVTLGVAEHIRRRFDISPTELEEPMRMLEDPPPHVRMQRLRQ
YQGSEAKRARTQQLKELEVFKRADAGSDVTNTSVLMFVTTESTMWAACND
IHANRLKEATELWDKALQRKLTWAYLMAPIYAPEDRQTYFESLVEMTFGH
TVMTKTEIFKMYDIDGTTKLCLNTAKSMLLGPNRMGLIFKVEIAPPSRHL
TLATGSSRVAGRVRSTWAKDRNQKMVWEGIFCKGEEGMGRGKDRSVSRWE
NNVTGWSEPGVGRVGSSSRNNSNNSGSIQFRLPGIATVPFAGAASIHPPL
PLDSHLDATEGQASRGREEGEAAPAGNLTPNPPRSCPNSFLVRAAAMPAA
ELEAIFSQRNIVMRKAGHWERAYTTKRVLEKGRRKTASPPPTPSPPTTTT
PREQGLQGQNQPLHQRHEERDAVSVTSADLSLSALLSNDGMLLCDVFAPE
GSDGRGVGEREEEGGKENGKEEVKETVMKAYGQENLAPLPTPGNVAHMNC
LMREVPLQHFLWPQSQQLEYHDHACQPTASVFPPRESGDEGRDGEGGCIG
YVAHSPSSLPVLSPAFREQIPQELLAKGEGGECGDDAVQRSPGVGGGVSF
MENEKEVMYLFKDGDLDSW*
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protein sequence of NO06G04340.2

>NO06G04340.2-protein ID=NO06G04340.2-protein|Name=NO06G04340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MYTVAFERLFLAGKIRRHSALRILKMWDFLSCLAEADVTLGVAEHIRRRF
DISPTELEEPMRMLEDPPPHVRMQRLRQYQGSEAKRARTQQLKELEVFKR
ADAGSDVTNTSVLMFVTTESTMWAACNDIHANRLKEATELWDKALQRKLT
WAYLMAPIYAPEDRQTYFESLVEMTFGHTVMTKTEIFKMYDIDGTTKLCL
NTAKSMLLGPNRMGLIFKVEIAPPSRHLTLATGSSRVAGRVRSTWAKDRN
QKMVWEGIFCKGEEGMGRGKDRSVSRWENNVTGWSEPGVGRVGSSSRNNS
NNSGSIQFRLPGIATVPFAGAASIHPPLPLDSHLDATEGQASRGREEGEA
APAGNLTPNPPRSCPNSFLVRAAAMPAAELEAIFSQRNIVMRKAGHWERA
YTTKRVLEKGRRKTASPPPTPSPPTTTTPREQGLQGQNQPLHQRHEERDA
VSVTSADLSLSALLSNDGMLLCDVFAPEGSDGRGVGEREEEGGKENGKEE
VKETVMKAYGQENLAPLPTPGNVAHMNCLMREVPLQHFLWPQSQQLEYHD
HACQPTASVFPPRESGDEGRDGEGGCIGYVAHSPSSLPVLSPAFREQIPQ
ELLAKGEGGECGDDAVQRSPGVGGGVSFMENEKEVMYLFKDGDLDSW*
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Synonyms
Publications