NO06G04320, NO06G04320 (gene) Nannochloropsis oceanica

Overview
NameNO06G04320
Unique NameNO06G04320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length592
Alignment locationchr6:1213318..1213909 +

Link to JBrowse

Properties
Property NameValue
Description60s acidic ribosomal protein p2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1213318..1213909 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Homology
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: EWM26450.1 (60s acidic ribosomal protein p2 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 8.000e-18
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSEL 62
            MRHLATYLLLKLGGN++PSASDV+TALSAVGVE DE RLSTL+ +LEGKDV+TLI+EGS+L
Sbjct:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKL 80
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: XP_005854766.1 (s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >XP_005855414.1 s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >EKU20945.1 s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >EKU21593.1 s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 96.7 bits (239), Expect = 5.200e-17
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSEL 62
            MRHLATYLLLKLGGN++PSASDV+TALSAVGVE DE  LSTL+ +LEGKDV+TLI+EGS+L
Sbjct:    1 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGLLSTLLKDLEGKDVETLIEEGSKL 61
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: KPA43555.1 (60s acidic ribosomal protein p2 [Fusarium langsethiae])

HSP 1 Score: 87.4 bits (215), Expect = 3.100e-14
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            M+HLA YLLL LGGN SPSA+DV T L +VG+E DE RL+TLI+ELEGKD+  LI EGSE LA+
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKTVLESVGIEADEERLNTLISELEGKDIQQLISEGSEKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: GAX27390.1 (large subunit ribosomal protein LP2 [Fistulifera solaris] >GAX21211.1 large subunit ribosomal protein LP2 [Fistulifera solaris])

HSP 1 Score: 86.7 bits (213), Expect = 5.400e-14
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLATF 66
            MRHLA YLLLKLGGNDSPSA D++ AL +VGVE D A LS L+ ELEGKD++ ++  G E+LATF
Sbjct:    1 MRHLAAYLLLKLGGNDSPSADDITKALGSVGVEVDSASLSKLMGELEGKDLNEILATGKEMLATF 65
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: KFY79261.1 (hypothetical protein V498_08956 [Pseudogymnoascus sp. VKM F-4517 (FW-2822)])

HSP 1 Score: 85.5 bits (210), Expect = 1.200e-13
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            M+HLA YLLL LGGN+SPSASDVS  LS+VG+E D  RL  LI EL+GKD++TLI EGS  LA+
Sbjct:    1 MKHLAAYLLLALGGNESPSASDVSAVLSSVGIEADSERLDALIAELKGKDINTLISEGSAKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: KZV68042.1 (ribosomal protein 60S [Peniophora sp. CONT])

HSP 1 Score: 85.5 bits (210), Expect = 1.200e-13
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            MRHLA YLLL++GGN SPSA+DV   LSAVG+E DE RLSTLI+ELEGKDV  LI EG+  LA+
Sbjct:    1 MRHLAAYLLLQVGGNASPSAADVKKVLSAVGIEADEDRLSTLISELEGKDVAALINEGAGKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: EME50007.1 (hypothetical protein DOTSEDRAFT_68758 [Dothistroma septosporum NZE10])

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-13
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            M+HLA YLLL+LGGN SPSA D+   LSAVG+E +E RLSTL++ELEGKD++ LI EGS  LA+
Sbjct:    1 MKHLAAYLLLQLGGNTSPSAGDIKEVLSAVGIEAEEERLSTLLSELEGKDINELISEGSAKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: XP_023458685.1 (60S acidic ribosomal protein P2 [Cercospora beticola] >PIB01024.1 60S acidic ribosomal protein P2 [Cercospora beticola] >PPJ53457.1 hypothetical protein CBER1_00369 [Cercospora berteroae])

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-13
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            M+HLA YLLL LGGN+SPSA+D+ + LSAVGVE D+ RL+ LI+ELEGKD++ LI EGS+ LA+
Sbjct:    1 MKHLAAYLLLGLGGNESPSAADIKSVLSAVGVEADDERLNKLISELEGKDINELIAEGSQKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: XP_007865193.1 (ribosomal protein 60S [Gloeophyllum trabeum ATCC 11539] >EPQ56465.1 ribosomal protein 60S [Gloeophyllum trabeum ATCC 11539])

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-13
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            MRHLA YLLL++GGN SPSA DV   LSAVG+E DE RL  LI+ELEGKDV+ LI EGS  LA+
Sbjct:    1 MRHLAAYLLLQIGGNASPSAEDVKKVLSAVGIEADEERLGKLISELEGKDVNALIAEGSSKLAS 64
[Close]
BLAST of NO06G04320 vs. NCBI_GenBank
Match: KIK47394.1 (hypothetical protein CY34DRAFT_247207 [Suillus luteus UH-Slu-Lm8-n1])

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-13
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLAT 65
            MRH+A YLLL++GGN SPSA DV   LSAVG+E D+ RL TLI+ELEGKD++TLI EGS  L++
Sbjct:    1 MRHIAAYLLLQIGGNASPSADDVKKVLSAVGIEADDDRLDTLISELEGKDINTLIAEGSAKLSS 64
The following BLAST results are available for this feature:
BLAST of NO06G04320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26450.18.000e-1881.9760s acidic ribosomal protein p2 [Nannochloropsis g... [more]
XP_005854766.15.200e-1780.33s-adenosylmethionine mitochondrial carrier protein... [more]
KPA43555.13.100e-1468.7560s acidic ribosomal protein p2 [Fusarium langseth... [more]
GAX27390.15.400e-1466.15large subunit ribosomal protein LP2 [Fistulifera s... [more]
KFY79261.11.200e-1367.19hypothetical protein V498_08956 [Pseudogymnoascus ... [more]
KZV68042.11.200e-1370.31ribosomal protein 60S [Peniophora sp. CONT][more]
EME50007.11.600e-1365.63hypothetical protein DOTSEDRAFT_68758 [Dothistroma... [more]
XP_023458685.11.600e-1365.6360S acidic ribosomal protein P2 [Cercospora betico... [more]
XP_007865193.12.000e-1368.75ribosomal protein 60S [Gloeophyllum trabeum ATCC 1... [more]
KIK47394.12.000e-1365.63hypothetical protein CY34DRAFT_247207 [Suillus lut... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL088nonsL088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR144ngnoR144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000007NSK000007Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04320.1NO06G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605116gene_9607Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100144g9gene4073Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04320.1NO06G04320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04320 ID=NO06G04320|Name=NO06G04320|organism=Nannochloropsis oceanica|type=gene|length=592bp
ATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACAG
CCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAGA
CTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGAT
GTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTGG
AGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCGG
CTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGCG
GACTTGGGCGGAGGCATGGACATGTTCGGGgtgagtgagggcggaaagat
ttgaagggggaagagagggagagaaggggggaacgagggagggagagatc
gagggacatatcttgcgttctacgatgaagcaggtgaaattgcgagtggg
agatattgaaagtatcagtgtgtcttccttttgtcaagcatctgtgtctt
tgctctatgtgacagcacgttggattttcatctcgttctcccctttcccc
cctacgctccaccaccaacagGGCGGCGGCGATGGGTACTAA
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protein sequence of NO06G04320.1

>NO06G04320.1-protein ID=NO06G04320.1-protein|Name=NO06G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKD
VDTLIKEGSELLATFGGGGGAGPAAAAPAEAAAAGAAEKKEKKEEKEEEA
DLGGGMDMFGGGGDGY*
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Synonyms
Publications