NO06G04230, NO06G04230 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G04230 vs. NCBI_GenBank
Match: EWM26414.1 (exosome complex component rrp46 [Nannochloropsis gaditana]) HSP 1 Score: 373.2 bits (957), Expect = 6.400e-100 Identity = 197/266 (74.06%), Postives = 219/266 (82.33%), Query Frame = 0 Query: 1 MEIDTTPTQPLPPSSLSLSLPPRPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTP------LPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIEEHSRQTLK 261 ME+++ P PLPPSSLSLSLPPRPDRRLANQLRPP+CELGPLNRADGSARFA G+TSVLAAVYGP APRFSRKER+EGAA+EVT+HPH G TSS+KEKEG VKALLEAAI L+RFPRT+IHVICQVCED+GGL+ACLMNA+ LAVINAGIDMKYVPL VSM SPPS+ + A S P YLLLDP+ EEE QS A +T+ ISSVD NVLS QSMG+MMP QLFEAIDVAK A KAL+ F+RMTIEEHSR K Sbjct: 3 MEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVCEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSMALISPPSATMKALPSLPXXXXXXXXXXXXXYLLLDPINEEERQSIATITIGISSVDQNVLSCQSMGIMMPSQLFEAIDVAKGAAKALMAFLRMTIEEHSRHISK 268
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_005853681.1 (exosome complex component RRP46, partial [Nannochloropsis gaditana CCMP526] >EKU22679.1 exosome complex component RRP46, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 328.2 bits (840), Expect = 2.400e-86 Identity = 174/240 (72.50%), Postives = 195/240 (81.25%), Query Frame = 0 Query: 1 MEIDTTPTQPLPPSSLSLSLPPRPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTP------LPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAID 235 ME+++ P PLPPSSLSLSLPPRPDRRLANQLRPP+CELGPLNRADGSARFA G+TSVLAAVYGP APRFSRKER+EGAA+EVT+HPH G TSS+KEKEG VKALLEAAI L+RFPRT+IHVICQV ED+GGL+ACLMNA+ LAVINAGIDMKYVPL VS+ SPPS+ + A S P LDP+ EEE QS A +T+ ISSVD NVLS QSMG+MMP QLFEAID Sbjct: 5 MEVESPPITPLPPSSLSLSLPPRPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSLALISPPSATMKALPSLPXXXXXXXXXXXXXXXXLDPINEEERQSIAAITIGISSVDQNVLSCQSMGVMMPSQLFEAID 244
BLAST of NO06G04230 vs. NCBI_GenBank
Match: CBJ25452.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 154.1 bits (388), Expect = 6.100e-34 Identity = 91/231 (39.39%), Postives = 132/231 (57.14%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIEE 254 R D R ANQ+RP E G LNRADGSARF G TSVLAAVYGP + R ER EGA ++V+ P G +S+D E E +++ LE +L R+PRT++ VI QV DDG +L+ +NA+ +A++NAG++M + L+V+ + + S +LLDP + EE + A VA S VLS ++G M + F + A T A+ +F+R++ E+ Sbjct: 5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITA---------------TVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQ 220
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_012198388.1 (hypothetical protein SPRG_04585 [Saprolegnia parasitica CBS 223.65] >KDO30684.1 hypothetical protein SPRG_04585 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 144.1 bits (362), Expect = 6.400e-31 Identity = 92/235 (39.15%), Postives = 132/235 (56.17%), Query Frame = 0 Query: 22 PRPDR----RLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 P PDR RL ++RP CE G LNRADGSARF HG TSVLA+V GP A + R+E+ GA +EVT KGA ++ DKE E +++ E I+L+ FPR ++ + QV EDDG LLA +NA LA+I+AG+ M+ S VGA + + L L LDP + E + A VT A + +L+ + G++ Q F ++ + A ++L F+R++ E Sbjct: 2 PTPDRREDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMR---------------SIVGAITCSILEDGQ---LCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQE 218
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_008880365.1 (hypothetical protein H310_14314 [Aphanomyces invadans] >ETV90976.1 hypothetical protein H310_14314 [Aphanomyces invadans]) HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30 Identity = 89/230 (38.70%), Postives = 130/230 (56.52%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 R D RL ++RP CE G LNRADGSARF HG TSVLA+V GP A + R E+++ A +EV KGA T+ DKE E ++K + + ++ +PR +I + QV EDDG LLA +NA LA+++AGI M+ S VGA + + L L LDP E +TA VT A + + +L+ + G++ Q F A ++ + A ++L+F+R+ E Sbjct: 10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMR---------------SLVGAITCSILDDGQ---LCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQE 221
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_009839526.1 (hypothetical protein H257_13641 [Aphanomyces astaci] >ETV70863.1 hypothetical protein H257_13641 [Aphanomyces astaci]) HSP 1 Score: 142.1 bits (357), Expect = 2.400e-30 Identity = 89/230 (38.70%), Postives = 132/230 (57.39%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 R D RL ++RP CE G LNRADGSARF+HG TSV+A+V GP A + R+E+++ A +EV KGA T+ DKE E +++ E + L+ FPR +I + QV EDDG LLA +NA LA+++AGI M+ S VGA + + L L LDP E +TA VT A + + +L+ + G++ Q F + ++ + A ++L+F+R+ E Sbjct: 11 REDGRLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQVVEDDGSLLAVAINAVNLALLDAGIPMR---------------SLVGAITCSILDDGQ---LCLDPSLTEGDAATASVTAACAGKNDGILTSLTTGLLNESQYFASSEICRRAIDSVLSFVRIAQE 222
BLAST of NO06G04230 vs. NCBI_GenBank
Match: OQR97799.1 (exosome component Rrp46 [Achlya hypogyna]) HSP 1 Score: 141.7 bits (356), Expect = 3.200e-30 Identity = 90/230 (39.13%), Postives = 126/230 (54.78%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 R D RL ++RP CE G LNRADGS+RF HG TSVLA+V GP A + R+E++ A +EV P KGA ++ DKE E +++ E ILL+ FPR +I V QV EDDG LLA +NA LA+++AG+ M+ + VGA + T L L LDP E + A VT A VL+ + G++ Q F ++ + ++L F+R+ E Sbjct: 8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGI---------------VGAITCTILEDGQ---LCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQE 219
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_008607929.1 (hypothetical protein SDRG_04054 [Saprolegnia diclina VS20] >EQC38337.1 hypothetical protein SDRG_04054 [Saprolegnia diclina VS20]) HSP 1 Score: 139.4 bits (350), Expect = 1.600e-29 Identity = 88/230 (38.26%), Postives = 128/230 (55.65%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 R D RL ++RP CE LNRADGSARF HG TSVLA+V GP A + R+E+ GA +EVT KGA ++ DKE E +++ E I+L+ FPR ++ + QV EDDG LLA +NA LA+I+AG+ M+ S VGA + + L L LDP + E + A VT A + +L+ + G++ Q F ++ + A ++L +R++ E Sbjct: 7 REDGRLVQEIRPLACEQSLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKSSGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMR---------------SIVGAITCSILEDGQ---LCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAVVRISQE 218
BLAST of NO06G04230 vs. NCBI_GenBank
Match: OQS01950.1 (U4/U6 small nuclear ribonucleoprotein Prp4 [Thraustotheca clavata]) HSP 1 Score: 139.4 bits (350), Expect = 1.600e-29 Identity = 88/234 (37.61%), Postives = 131/234 (55.98%), Query Frame = 0 Query: 19 SLPPRPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 S+ R D R ++RP CE G LNRADGSARF HG TSV+A+V GP + R+E + A ++V KG T+ DKE E +++ E ILL+ FPRT+I + QV EDDG LLA +NA LA+++AGI M+ S VGA + + L + L +DP E +TA VT A S+ + +L+ + G++ Q F ++ + A +++ F+R++ E Sbjct: 500 SMDKREDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMR---------------SVVGAITCSVLEDSQ---LCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQE 715
BLAST of NO06G04230 vs. NCBI_GenBank
Match: XP_638714.1 (hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4] >EAL65367.1 hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]) HSP 1 Score: 138.7 bits (348), Expect = 2.700e-29 Identity = 83/230 (36.09%), Postives = 134/230 (58.26%), Query Frame = 0 Query: 23 RPDRRLANQLRPPLCELGPLNRADGSARFAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKEGVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAGIDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQSTAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMTIE 253 R D R N +RP E G LN+ADGSA+F+ ++ VLAAVYGP +RKE+I + +EVT P G DKEKE ++K +E+ IL +PRT I VI QV DDG +++C +NA+ LA+++AGI+M + +V++ F + S + +DP EEE QS AI + SS++ N++ +++G + Q F+ +D A + +++F+++ ++ Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGS------------------IYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVK 218 The following BLAST results are available for this feature:
BLAST of NO06G04230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G04230 ID=NO06G04230|Name=NO06G04230|organism=Nannochloropsis oceanica|type=gene|length=873bpback to top protein sequence of NO06G04230.1 >NO06G04230.1-protein ID=NO06G04230.1-protein|Name=NO06G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bpback to top Synonyms
Publications
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