NO06G04140, NO06G04140 (gene) Nannochloropsis oceanica

Overview
NameNO06G04140
Unique NameNO06G04140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length655
Alignment locationchr6:1157543..1158197 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1157543..1158197 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000057NSK000057Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04140.1NO06G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558355gene_6746Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04140.1NO06G04140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04140 ID=NO06G04140|Name=NO06G04140|organism=Nannochloropsis oceanica|type=gene|length=655bp
GGGGGGGGGAGTATGATGAGAGGGGGCGGCGGAGGGTGGTGCCGCGAGGG
AAGGGGGGAGGGACGGTGACCTTGGAACCGTTGATGGTGGAGACGGTAGA
TTATTTCGCGGACCGTAAGGAGGCGGTGTTGGAAGTCTCAGTGAGGGAGA
CGAAGAGTGAGGAGATTAGGCGGGCTTTTGAGCAGGTGGGGCATCCGGTC
AAGGGATTGACAAGGGTAGCTTTTGGGTCTATCGTGCTCGGTGATATGAG
GCTGGGGGAGGCGAAGAAATTGTCGATGGTGGAGATGGGACGTTTGAGGG
GGGCGCTGGCGGCGATGAGGAAGAGGATGAGCCGTCGGAGGAGAAAGGCG
TTGACGGGTTTGGGATCCGAGGGCGAGGAGGAGGGAAGGAGGGCGAGGAA
AAAGAGTAAGGGGGGAGGAGTGATGGGAGCGGGAGGGAAGGGGGGAATAG
CGGGGGAGGAGGGGGCGGAGGAAATAGATCCAGATATTGAGGCGTTCTGG
GATGCGGTGGAGGATGAGGAGGACCAGGAGGAAGACGGGGTATGGTTGGG
CGATTATGATGAGGACGAGGACGAGGGGGAGGAGGAGGAGTCGTCGTAGC
GAGAGTCAAACAAATAGAGAAAGGCGACAAAGTACCCCTCAGAACTCACT
CATAG
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protein sequence of NO06G04140.1

>NO06G04140.1-protein ID=NO06G04140.1-protein|Name=NO06G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MVETVDYFADRKEAVLEVSVRETKSEEIRRAFEQVGHPVKGLTRVAFGSI
VLGDMRLGEAKKLSMVEMGRLRGALAAMRKRMSRRRRKALTGLGSEGEEE
GRRARKKSKGGGVMGAGGKGGIAGEEGAEEIDPDIEAFWDAVEDEEDQEE
DGVWLGDYDEDEDEGEEEESS*
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Synonyms
Publications