NO06G04040, NO06G04040 (gene) Nannochloropsis oceanica

Overview
NameNO06G04040
Unique NameNO06G04040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4232
Alignment locationchr6:1126890..1131121 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1126890..1131121 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006644phospholipid metabolic process
GO:0050482arachidonic acid secretion
Vocabulary: Molecular Function
TermDefinition
GO:0004623phospholipase A2 activity
Vocabulary: INTERPRO
TermDefinition
IPR036444PLipase_A2_dom_sf
Homology
[Close]
BLAST of NO06G04040 vs. NCBI_GenBank
Match: XP_005855864.1 (hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >EKU20489.1 hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526] >EWM26401.1 hypothetical protein Naga_100365g4 [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 7.800e-67
Identity = 123/167 (73.65%), Postives = 143/167 (85.63%), Query Frame = 0 
Query:   23 LVLSLTAISATASVLPRSRGTSRHHLPSAFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPSTGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRSVQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEG 190
            L +SL  + A ++    S G  R   P AF+FLGL +PA+P+++MP+SPIEVKLVYQRV+DPIHYGDYCGPTPEITP TGC+HPLNLAALDDTDE+CRLHDHFYCKCDS+Y RQGK+ PSSALIATRS+ + FRKTY ANLD+DYY+CVHEADQEMLG FDTLVSEG
Sbjct:    7 LFISLVPMMARST----SMGDRRRRCP-AFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEG 168
[Close]
BLAST of NO06G04040 vs. NCBI_GenBank
Match: OEU21616.1 (hypothetical protein FRACYDRAFT_235242 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-7
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:   80 RVIDPIHYGDYCGPTPEITPSTGCQ-HPLN-LAALDDTDEVCRLHDHFYCKCDS-IYARQGKTAPS---SALIATRSVQSGFRKTYLANLDRDYYLCVHEADQEML 180
            R + P  Y +YCGPTPE+T    C+ H  +   A D+ D  C+LHD  YC C+S +  R+ K  P+   ++LIA R +      T L  +DR+Y  CV++AD  ++
Sbjct:   53 RKLYPGTYKNYCGPTPEVTVRDNCRAHGWHGDEASDEVDSACQLHDISYCHCESGLMERKAKIKPTNSLASLIALRFITLP-ALTRLDLVDREYLRCVNQADTNLI 157
The following BLAST results are available for this feature:
BLAST of NO06G04040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855864.17.800e-6773.65hypothetical protein NGA_0525000 [Nannochloropsis ... [more]
OEU21616.12.400e-737.74hypothetical protein FRACYDRAFT_235242 [Fragilario... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000068NSK000068Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04040.1NO06G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G04040.2NO06G04040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597881gene_6736Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100365g4gene4129Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04040.1NO06G04040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G04040.2NO06G04040.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04040 ID=NO06G04040|Name=NO06G04040|organism=Nannochloropsis oceanica|type=gene|length=4232bp
GGGAGGAGGAGGGGAGGGGGAGATTGTAGTTGTAGATTTGTACTTGTGAT
TTTAGGGTGGACGATGGAATGAAAGAATAGTTTATTATTGACAAAAATAC
CACCAAGAAAAAGATCAAGAACGAAGAGAATAACAGCAGGACGAACACCA
ACACACGATTGCGACCCGCGTGGAGAGGTACAGGATCATGGCTCCATCGT
TTCCTCTGCCTCTCCATCCCGTTCATTATGCCACAATTATGTGGTATGTC
TTCGAGAGGGGGGGGGGGGGGAATGCGAACATACATTCAGACTGGGTCAC
ATCCCTTCCATGTGAAGGCAAATCATGAATGAACTGTGCGATACATGTTT
AGAAGAAAGGGAAAGACACGTACCCCAATCCCCCATCCCCCCCTCCCTCC
TTGTTGCTTGATTCCGTGACTCTTTGTTTGCTCTTATTGCAGTCTTTCAG
TTTTCTTCCACTTGATTTAAAGCCATCATTCTATTCATTTGATCCATGCT
AAATCTTGCTCTCCTCAGAGTCTTTGTGTATTAAATGTGAATATCTACGT
ATGTACACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCT
CATCCCAATGACCCATCATGCCCCAGCCCCAAGCAGCTCCCGCACGTCTG
CCACACCATCTGCCTCGCGAATGGGATGTACGATAAAACATAGTAACACA
AGGACATAAACTGGATAATGATCATGATCACTAACAAGGCTCCCTGACCT
GGTACATCCGAGAAGGCAACTGCGAGGGTCAACACCAACGTCAGCACATA
CACCGCCGTACACAGGGCCCGAGTCGGATGGAACATGCTTTTCGCCTGTG
CAAATGGCCCAGATAAGAAGCACGACCCTGCGAGGGAAATGAGATTTCCT
AGGGTGTACATGACGGCGAAAGGCCCGGGACTGCCCGTCAGGAGCTTGGT
GAACCGGAAGAACGAGCCCACCTCGAGGATGAGACCCAGAACGAAACAGC
AGAGGCAGCCAAAAATGCGATGTTGCCAAGTCAAGGAAGGACACCACCAG
CACATGTCTTCTTCCATTTGTTCACACCATGTCTTGGGTCGGGCTTCTAC
TCCCAGGAGGCGGCGGGCCGAGTCCATGAAGGAAGGAGACGAGGAGGCGA
AGGCGGCTTGGGCGGAGGAAGTGGAAGAGTGGGAGGCACCACGGCCAGGA
TTTAGGCCAGCTTCTAGGTTCATTGGGTGGAAGCACGAAGGTACACTGTG
GCGGGGGCTGGGTGTTGTGAGAGGTTCATGTAAGTTGATGGAATGAAGGG
GGGAGGCGGCATGCTGCTCAGATGCGATGCTGTTCAAATAGGCAGACAGA
ACGTTAAGACCTGGACGGGCATTCATGGAGGCATAAACTTAGAGTTTTGT
TGTCAGCGTGATTGGTAGCGTGTGGGCGGTGTGATTTTGAGTGGGTAGGG
GCTTAAGGCACGGGCTGCTGTGGGCACTTGATTATGATAATGATGACGGT
GGTAGTATTTCTTTTCAAGCCGGAGCGTCTGTGGTGGAACAAAAAAGCAC
TGGCCACCATGCCACCCTCTCATGAAGAACATATTGGCTCTGTTGTGTGA
TGTTGTAGTCTATGCTAAGGCGGGTACGAAGGGACGGGGCATGGCAGACG
CGAGACGCCATGCGAAGCAGCGGTCAATATAATAAATAATAATAAATTCA
AGTCGTTCAAGTTGCCTCCGAACCGATCCCATCGAGAGTGCCGTCCACTC
GCCGTGTGCATTTGGTTGTCGTCCCCCTGTCCAACCCAACCATTCCGTCC
ACACCAAGGCATCTTTAGCTGCAATATGCTTGGCATCTCCCGTTTGTGCG
TGTGAAGCGCCTCGGGCACCCTCACTGCCTCGCGTAGTAGAACCATCTCC
GAGTTCCTCTCTCTCCTCATCAAACGCACACGTCACCACTTTTAACAGGC
AGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGACTATACCGAGCACAA
CAAGGACCAACGATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATG
TGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGA
TCTCGGCTACCGCAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCAC
CACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCC
TAATATCGAGATGCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGC
GCGTCATCGACCCAATgtatgtggagggatggaaagggaggaaggtgaag
ggagggaggagaggcgaggtaaatagaatctcggcttggggtcattcacg
cacgattaatccttccatttatacatgtatatatgtacatatgcccttat
tttcaatctttcagACACTATGGCGATTATTGCGGCCCTACACCTGAGgt
acgtccctcacctgtccctcttccctctctccctttttcctttttggggg
ggtgtaggtgcgtgctcacgagaatgcaggccatgctgaagctgtcgtgc
cttttccatccttcctaccatcttccaccttccgttcagataaccctctg
cacgggctgtcggcacccgccgaatctagtattgaatgaatgattgattg
aatgctcgatcaatctaacagccttatcattcctaatctaggagtctcat
ccttcctaatctagtagcctcattcttttgaaacttcccccctctccccc
cttcctcttttctccctccttccatcagATTACGCCGTCCACGGGCTGTC
AGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGAGGTGTGTCGC
CTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACGCCAGgtaggg
aggtagggaaggagggagggaggcatgggacgacatgcttggtaggggta
gggatgaagaaagagggagggaggcaaggaggcagggggtgggaaagggc
gttgaatggaaggaaagcacgatagacactaggactcctggaggccttgc
tttgtcggtcaatgggatgccgatttgatttgtttgacctggtggtcaag
actcaccctttcccccctccctccctccctccctccctccctccctgcct
cttccttagACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTC
GTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGC
GACTATTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTT
CGACACGCTGGTGTCGGAGGgtgagggagggagggaaatagggagggagg
gagggagggagggagcagacgagaaagagggagaacaaggtactgaatgg
ttgacttaaacgtgaactaaataaataaatcaataagtaaatgtcggtaa
acacatgtaaacaaacaaggaagcgttgtcccggaccattcgtcccccct
ttcccttccgccccctttccctcccgtcagGCCGCCTGCCTGCCAAATAC
TGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTATTTAG
GAGGAATATGGCGGTGGACGCCGAGATCCTCGACCTGgtgagagacggag
ggagggagcgaggacgagagaagggttgagtggagttgtggatgcatgcg
tactgatttatatattgatattttccttcctccttatgtatacatacatt
tcacacagCAAGCACAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTT
GGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCA
TGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCAC
AGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGCCTTGATGAAGGGGG
AAGGAGTACGAGAAGAGCTGTAAATTTATGTGTTCCATGTGCGGGGAATT
GTGACGTTGAACAGAACATGCGAATGAAAATCACTATTTACGTACACACC
CTCCCACACACACTCTCACATACATATATATATGTATATGTCGTGAGTGT
TGTATGTGCGGTGTATGTCGGTGGAAAATGAGAAAAGTGAGACATAACGT
GACTGAGGCATATAGTTAGAAATTGTACGGAGACGAGTGAGAAGGCAAGA
CACTTCCAAAAAGAAGGAAAAGAATCCCGAAT
back to top

protein sequence of NO06G04040.1

>NO06G04040.1-protein ID=NO06G04040.1-protein|Name=NO06G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MTAPPCPRQLLQCAATTFHLLSLVLSLTAISATASVLPRSRGTSRHHLPS
AFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPS
TGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRS
VQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGRLPAKYWDPVT
RWKFDSLLDVFRRNMAVDAEILDLQAQGGMERGRAYWFGEDEKKGEEGMV
QGSSHESRMINGKSKGLKSSSQVVTATTSSNGKP*
back to top

protein sequence of NO06G04040.2

>NO06G04040.2-protein ID=NO06G04040.2-protein|Name=NO06G04040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MTAPPCPRQLLQCAATTFHLLSLVLSLTAISATASVLPRSRGTSRHHLPS
AFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPS
TGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRS
VQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGEGGREIGREGG
REGADEKEGEQGTEWLT*
back to top
Synonyms
Publications